Array 1 46271-45937 **** Predicted by CRISPRDetect 2.4 *** >NZ_NITN01000006.1 Cronobacter sakazakii strain MOD1_Jor183 csakJor183_contig_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 46270 29 100.0 32 ............................. CGAGAGGTAGTAAGCAGCTTCTGTAAGCTCAT 46209 29 100.0 32 ............................. CCCGCACCAGTTCTTACAACCGAGGGACGCCT 46148 29 100.0 32 ............................. GAAACAGCCAATCAATGATGCCTACATCCGGT 46087 29 100.0 32 ............................. CCCCCTCTGGTTTTGAGGAAGAAAATGATGGC 46026 29 96.6 32 ..................C.......... GCACCAGCATTAACGCCGAATACATAATTATG 45965 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================ ================== 6 29 98.9 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTGGCCGCCGGTGAAATCGAACCACCGCAGCCCGCGGCGGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAGCGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGTGACGTATCGCGTCGGGTGCGTGAAATGATCTGGCATCAGATAACCGAGTTAGCGGAGGAGGGCAGTGTGGTGATGGCCTGGGCCACCAATAATGAATCCGGTTTCGATTTTCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGGATGTTGTTGCACGAAAAAGTGTAATAGATACAAGTATATAGTTTTAGA # Right flank : TTATTGAGTAGAATCGTCTGCCTTGGTGGCTGCGCTTCGCTTACCCACCCTACATATAAACTGGCGGGCCTGCCCTTAACCGATCCACAAAAACTTCCCGCACCTGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGCGTTGGGTTGCAATCGCCGGGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCTGCCCTAAGTCCTTTTTTCAGCTTTATCCTGGTGATGAAACATCATAAGAGGTGTATTAACTCATCCTGGATACGAGCGGCCTTTGGCTGCTAATATCAGGTGCGGTTATTTAATATAACGTTTATGTTTTCATTTATGAGCACTCAGAAATGGATAATTCACTCAGGCGATTAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 32524-32674 **** Predicted by CRISPRDetect 2.4 *** >NZ_NITN01000075.1 Cronobacter sakazakii strain MOD1_Jor183 csakJor183_contig_75, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 32524 29 100.0 32 ............................. CAATCGAGGAATTAGTGACTAAACAGGCAGCC 32585 29 100.0 32 ............................. ACATCTTCATCCTAGCCGGTAACTATCTGCAA 32646 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCGAACAACATCGCGTTTATTGTCGCCAATATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTGACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGGTCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACCTTCGTGTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAATAGTGGCGCTTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTCAGTACAAAGGGTTACTTTTAGT # Right flank : CCAACTCAAACGCCGAGCCGATTCACGTATCTCTGTTCCCCGCGCGAGCG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 25395-22375 **** Predicted by CRISPRDetect 2.4 *** >NZ_NITN01000013.1 Cronobacter sakazakii strain MOD1_Jor183 csakJor183_contig_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 25394 29 93.1 32 ...G...............C......... TCAGATCCAGGTAACGTTGCGCTGGCGCTGGT 25333 29 100.0 32 ............................. AATGCGATCAAAGATAACGGGCAGGCTGCCAT 25272 29 100.0 32 ............................. CCATTAACATCTATCAGCGCAAACATACCGGA 25211 29 100.0 32 ............................. CATCTACCACCCGGCGCGGTGGTCGTGATTGT 25150 29 100.0 32 ............................. GAGTCGGTTCCGCGCTTCAACGCAAGGAAAAA 25089 29 100.0 32 ............................. AGCTTTACCGCGCTCAAGGATTTCCCGAATGG 25028 29 100.0 32 ............................. AATCTCGCGTCTGCATTGTCGCGCCAGTTATC 24967 29 100.0 32 ............................. GACTTTGCCACGATACCGAATGCGATCATGTC 24906 29 100.0 32 ............................. TATGACATACTATGAGAGCGCAGCGGGCGAGG 24845 29 100.0 32 ............................. AATCGACACCTTCTTACCGTCCACCAGCGTAT 24784 29 100.0 32 ............................. CCTGGAGTCGGGCGAAGTCGCGTTATATACCG 24723 29 100.0 32 ............................. CTGCGTTCGTCGTCGAGCTGCAGCACGTTGTT 24662 29 100.0 32 ............................. GTTCGCGCAACTCAGCGAGCGGCGGCAGCCGA 24601 29 100.0 32 ............................. GCAGGCTCAGTGGTCAGAAGCTGAATGGTCGA 24540 29 100.0 32 ............................. CAGCCAGCGCCGGAAATAAACGTTCATATCGA 24479 29 100.0 32 ............................. AAACTGACTCTACAACACCTGGATACCTGGGT 24418 29 100.0 32 ............................. GACGCTTTGACGGAATGACGGACATGTATGAA 24357 29 100.0 32 ............................. TGCTGCAAAAAGAATTACTTGGCACCGATGAT 24296 29 96.6 32 ......................G...... ATCCGCGGGGAGGAAACACTGACGGTACATAC 24235 29 100.0 32 ............................. GCCATGAGAGAGACGGCATAGACCTGAATCAG 24174 29 100.0 32 ............................. GCTGACGTTCTGCAGCCATGCGCCTACGTGAT 24113 29 100.0 32 ............................. ATCCAGCGTGAGTAATATATAGCTATGTTATT 24052 29 96.6 32 ............................T GAAACGGCGGTTACCCTGCCGGGAACGTGGCG 23991 29 100.0 32 ............................. CAGTCTCTGGCAACCTCCCAGCATTCGCTACT 23930 29 100.0 32 ............................. CGGTCCATTTTCTTACCAAAACCGTATGTTTT 23869 29 100.0 32 ............................. CAATTCTCCCGCCGCGGGTATACCGCGGCAAA 23808 29 100.0 32 ............................. CTGGTCAGCGTAAACGCCGCAAATACGACAAA 23747 29 100.0 32 ............................. GCAACTTTTAGCGCCGCATTCTCCGCCGCTAG 23686 29 100.0 32 ............................. TAGGGAATCAGCGCCAGCATTTTGCGCTTGTC 23625 29 100.0 32 ............................. AAGTGATAACAGTGCTATTGCCGTTTTTTGAA 23564 29 100.0 32 ............................. GCTAGCCAGGTCGTTGCCAGCTTCATGCCCTC 23503 29 100.0 32 ............................. AGCGAGACGGTCGCAGCGTGTAATCTACAGTC 23442 29 100.0 32 ............................. ACAACTGGCAACTGGTGGATATCGAGACCACT 23381 29 100.0 32 ............................. TGCGTGCCACGGGTAAGGAATACGCCAGCTTT 23320 29 100.0 32 ............................. GGGTGGCATTTAACCCCAAATACCCGCCGCCA 23259 29 96.6 32 ..A.......................... GCAGATCCAGGTAACGTTGCGCTGGCGCTGGT 23198 29 100.0 32 ............................. AATGCGATCATCGATATCGGGCAGGCTGTCAT 23137 29 100.0 32 ............................. GTGTGAGACTTTTGCGCCGCCTAACTTGATCG 23076 29 100.0 32 ............................. CAGGAGATCGCCAAATCAACGCCCAGCCAGAC 23015 29 100.0 32 ............................. CCGCGGCGGTATTCCCTGCAGGCCTGGTTATT 22954 29 100.0 32 ............................. GCCATCGGACGCTTCTGCCAATCTTAACAGGA 22893 29 100.0 32 ............................. GCGCGACGTATCGCACCGTTGCGCAGGATACC 22832 29 100.0 32 ............................. GTTATCATCTGAATGCCTAAAATTGAGGAATT 22771 29 96.6 32 .C........................... GCGGTTGCACTCCACCGCGAAACCCTCGAACC 22710 29 100.0 32 ............................. TTTTCGAAATTGAGCATATTTAACCTATGATT 22649 29 93.1 32 ........T..A................. ATTTTCGAGCAAAGAGGCAACAGGTCTTCATC 22588 29 96.6 32 ...........A................. ATCGCCAGTATTTTCAACGTGCCGGCGCACAT 22527 29 96.6 33 .C........................... AACGCTCGCAGCAGGTACGCTGCAGCAACCAGC 22465 29 93.1 33 .C..........T................ AACGCTCGCAGCAGGTACGCTGCAGCAACCAGC 22403 29 96.6 0 .C........................... | ========== ====== ====== ====== ============================= ================================= ================== 50 29 99.1 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : CTGGGACAACCCGCGCGAGCAATCGCACGCACGACGCGACCGCA # Right flank : AACGCTGACCTGGCGAACACGCTGCAAAATCTCCGTGCCCCGCCAGCCGTAATAAACCGCCCAAGCTCTTCGCGCCTGTCAATCACCGCCCCCTTTCCCGCCACAATCTTCAGCAACGTTTATACTTCAAAGCCCTTATTAAATTTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCATGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCATCCGCGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGACGTCCGACACATTGTGCTGACGCATCTGGATTTCGATCATGCGGGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 16523-14994 **** Predicted by CRISPRDetect 2.4 *** >NZ_NITN01000020.1 Cronobacter sakazakii strain MOD1_Jor183 csakJor183_contig_20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 16522 28 100.0 33 ............................ AGAAACTCGGGGTTGCGCTCTCGGTGAATAACC 16461 28 100.0 32 ............................ TGCCCATCCGGCACACCTTCGGCGAAGAAATT 16401 28 100.0 32 ............................ ATATCGTCAAGCCGGTTAATGAGGCGCTTGCC 16341 28 100.0 32 ............................ CTCTGCACCAGTGATGGAATTACCCATGGCAC 16281 28 100.0 32 ............................ TCGATCGCGTAATCGCGCGCGCGGTTGAGTGT 16221 28 100.0 32 ............................ GCGGATCACTTCGGTGGTTGGCGCGACGGCGA 16161 28 100.0 32 ............................ GCGTGGGGCTGGCGTTAAGGGGCAATGGCGCG 16101 28 100.0 32 ............................ TGGGTGTGTTTTGACAGGGACGCATTCGAACT 16041 28 100.0 32 ............................ TCCATCTTGTCCAGGCGCTTTTCCATCTCGTC 15981 28 100.0 32 ............................ ATCGCGTGTTGATGCTGGCCGCAGCATCTGCA 15921 28 100.0 32 ............................ AGGGCGCTCAGATTGCCGTCATATTCGTTCTT 15861 28 100.0 32 ............................ TGCACGCCGGCGTTTTGTTTAAACGTCGCGTT 15801 28 100.0 32 ............................ GGCATTACGCCGGGTGAGGTTAAGTTCCGCTA 15741 28 100.0 32 ............................ TTTGCTCTATCCTCGTCAGATAAGGAATAAGC 15681 28 100.0 32 ............................ ACGTCGTCAGTTTCAAGCTCACTGCGAAGGAA 15621 28 100.0 32 ............................ CGCTACCGTGTGCTTCATTCACCGCGCGAAGT 15561 28 100.0 32 ............................ TTGTTGTGCAGGCCCGCGAACGCCTCTGTGTT 15501 28 100.0 32 ............................ GTTTTAATGCCGAAGAAGGCACGGCTGACCTT 15441 28 100.0 32 ............................ TCTGGCGTTCGGTTTGCGGCGGTATCGTCCCA 15381 28 100.0 32 ............................ GTTGTGGTGAATGCGCAGGCTGATGCGCTGAT 15321 28 100.0 32 ............................ TCAGAATGGCCCAGCGATGACGGCTACCGAAG 15261 28 100.0 32 ............................ GTACGACCCGCAGATTGCTGAGTACGAGCAAA 15201 28 100.0 32 ............................ AGCGCTGCTATCAGCTCAAGAACGGCAGCGGG 15141 28 100.0 32 ............................ AATGGGGTCATTATCGGTTCCTCCGTGATGCC 15081 28 96.4 31 ......................A..... TCGAACACAGCGACGCCGTTCCCGTCGCCGC 15022 27 92.9 0 ........................-..T | G,T [14999,15002] ========== ====== ====== ====== ============================ ================================= ================== 26 28 99.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CGGCGCTGGCGGAATTAGAGGCTACGCGCTGGCGGGCGGGTTTGCAGGATTACTGCCAGAGCAGCGCGATATTACCCGTGCCACTGGTTCAGGGCTGGCGCACCGTGACGCGCGTGCAGGTGAAAAGCAACCCCGAACGCCTGCTGCGCCGCTCAGTGCGTAAAGGCTGGCTGACTGAAGAAGAGGCACAGCAGCGGCTTTCTGGTTTACAGGAGCAACAAACCGCTCTGCCCTGGATTCAGGTTAAAAGCCTCTCCAGCGGCCAGCAATACCGGCTGTTTATCCAGCACGGCGCACTTCAGCCCACGCCCGTCAGCGGCACCTTCAGCAGTTACGGGTTAAGCGCCAGCGCCACCATCCCCTGGTTCTGACCCTTTTTAAATACGTCTCGCTAACCTGTTGATTTTTATAATGGGTTAGTGAGGCGTTGAAAAAAGGGTTTTAAGAAGTAAGCAGCGTTTATATTTTTATAAACAATGGGTTAAGAATTTTTGTCTTCA # Right flank : CACAGCGAATTCCCTCGCCGTCACACTTGACCTTCCTGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCATTTGCCGCAGAGCAACCCGCGCTGCCCATCCCCGCGCTGCTGACGCCGGACGCCCGCAGCAGCATTCAGCTGACGGTTCAGGCCGGCAAAACCGCGTTTGCCGGTAAAAATGTCACGACCTGGGGATATAACGGCTCGCTGCTGGGCCCGGCGATTAAGCTGCGCCAGGGCACGCCGGTCAATATCAATATCCGCAATAACCTCGCCGAAGAGACCACGGTGCACTGGCACGGTCTGGAAGTGCCGGGCGCGGTGGACGGCGGGCCGCAGGGAATTATCGCGCCGGGGCAGACGCGCAGCGTAAGCTTCACGCCTGAGCAGCGCGCCGCGAC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 27361-25232 **** Predicted by CRISPRDetect 2.4 *** >NZ_NITN01000020.1 Cronobacter sakazakii strain MOD1_Jor183 csakJor183_contig_20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 27360 28 100.0 32 ............................ TGTGCGCACTCAGGTCATTCAGCCTGCGCTTG 27300 28 100.0 32 ............................ TGCCCGTGAAAAGACCAGTAATCATCCTCTTC 27240 28 100.0 33 ............................ CCGCAAAACTGGAGTGGGCCGCACAGGAGGGGT 27179 28 100.0 32 ............................ TGCCTGACCTGATGAAGGTGCGCGGCTCAATG 27119 28 100.0 32 ............................ GTCTCCGCCAGCGCGCCCCAGCCCTGCGCCGC 27059 28 96.4 32 .....................C...... CACTGATAGAGGCGCAGCTCGCGCATAACCTC 26999 28 100.0 32 ............................ TCTCCAGTGCCATCCTCAGCCCCGGCGCTATC 26939 28 100.0 32 ............................ AAAAACGTTTTGCCAGACCTGGCGGATGAGGC 26879 28 100.0 32 ............................ AAAACAATATGGCGAGCACGGCGGTTGCGGGA 26819 28 100.0 32 ............................ GTTGCCCGCTGGTCAAGAATTTTCAACGACAC 26759 28 100.0 32 ............................ ACCTGTTGCGCGTTCTGCGCGCGGGCCTGCGC 26699 28 100.0 32 ............................ AGGGAGGACACGCGGCGGCCGTCAACGTAGCG 26639 28 100.0 32 ............................ AGCGCGAGCTTGACATGTTAAATATCTAAGGA 26579 28 100.0 32 ............................ CCGCCGTCGCGCTGTTCTGCGCGGATTTCTCC 26519 28 100.0 32 ............................ TCCGTCCGATCGTTTAACGACTGGAAGGAAAG 26459 28 100.0 32 ............................ AGAGAAAGGTGCGAACGGCGTACCGGACAGGC 26399 28 100.0 32 ............................ CAGCGCTTCGGCGATAATCTTCTCGCCGCGCG 26339 28 100.0 32 ............................ ACCAGCTATCGACCGCGCCCACATCTGCGTCG 26279 28 100.0 32 ............................ GTTACGCCAAAATCAACGGGCGATAACTGCAG 26219 28 100.0 32 ............................ TTTGCCGGGATCGTCGCTCATCAGCATCATCA 26159 28 100.0 32 ............................ AGCTCCTGCTCACACGCCGACAGGTCGTCGTA 26099 28 100.0 32 ............................ ACACTATAGTCACCTAAATTCAGAGACGGTTT 26039 28 100.0 32 ............................ TATGGCTGCGACCGATATTGCAAAAATCGTTG 25979 28 100.0 32 ............................ CGTGCAGAACTGACCTCAACGCGCGCCGCGAC 25919 28 100.0 32 ............................ TCACCCACACTCCACGGCCCCAGGTGTAGCGA 25859 28 100.0 32 ............................ GTCGGCCCGCTGTAAATCAGGGTCCAGACGCC 25799 28 100.0 32 ............................ AGTTCGCGCACGAAGTCGGCTGTATAAAGCAC 25739 28 100.0 32 ............................ GCTGAGCAGATATCCGAAACTGACCGCCGTTG 25679 28 100.0 32 ............................ ATCTGTATCAGCCCAGGAACCGTAGTCGTCGT 25619 28 96.4 32 A........................... GGTGCGCTTAGTGCCCTGGACGGCCTCGATAT 25559 28 96.4 32 A........................... AGGATCACTCGATAAACGGCGGCGCAGACGTG 25499 28 96.4 32 A........................... TCCGATGCGGCTAAACAGGCGTATCAGGACAT 25439 28 96.4 32 A........................... AACAGCTCGGCGTCCTGGTAAATTCGTTCCCC 25379 28 100.0 32 ............................ AAACCTCGACCGCGATACTGGCAAGCTCGACA 25319 28 100.0 32 ............................ TGTAGGGGCGTACCCCTCCCGGCCAAAAAAAA 25259 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 36 28 99.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CAGAAAAACAAAAACCGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGCGCGGATAACTGCCTGTTTCAGGCGATGTTGTACGAACATCATCGACCAGAAAGCAGCAGAAAAATCCCTCTATACGATACGGCAATCGCGCGAGTTAACGCACCGAAGAGCAAACCACTGAACGAATGAAACGATAAAAGTGATGGGCGTTGCGCCTGGACGTCTAAACCCTTTTTTATGCTCCGCTTGTAAGGCGTTGATTTTTAATGCGTGCAGTTGTGGTGATAAAAAAGGGTTTCAGGCGTTAAAAGCAAAAATTTGTTTTCAATTCAGGCATTCCGGTAATATTCGCTCCT # Right flank : ACTCCCAGCTACCCGCCGGGGTTGGATACGCCGTCCACTGCACACCCGCAGTAAAAAATTTTAAGCCCGAAATAATGCTTTTATTATCGTTATATAAATAACGCCGCAATATCACGGTAAAATTATCCATAAAATTTATGGTTTCTGCTGTACGAGCTTTGCTGGAAAATTCGCGCCAGATATTAATGCGGTGCTAATTAGCCCATATAACGGCGATGACACGTAAGAACCACATTAACTACAGACATTTGCAGGTTTATTGCCTGTCACAGGGTGTCGTTAGAGTAATCAGTAATTATGTTTGATTGCAGATAATAGCGAAGGCCCTATAAAAGTTGACATTTAGTGTCATTCATTAATAAAGCGCGGGAAATGAAAGGGATGTCACGGCATATTTAAAGGCTTAATAATAGACTCATCTCTTATTTATTTTTCAAAGAAATATAAATACAGGAATCATCTAACGGAATGATGTAATGGATCGGAATGCCGTAACGCCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //