Array 1 875-1502 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWZH01000048.1 Pseudomonas aeruginosa strain UQCCR 576652281 AC25 NODE_48_length_36904_cov_37.1754, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 875 28 100.0 32 ............................ GCCACAATTCGTCGAGGACCAGGACCGAACCA 935 28 100.0 32 ............................ ACGCCGAGGAAGCCAACGAAGCCGCCAGCGAA 995 28 100.0 32 ............................ AGCAACGTGGCCCAGCTCGCCAACTGATCGAG 1055 28 100.0 32 ............................ ATGCGCACGCGGGCCTTGGTCAAAGCTCCCCC 1115 28 100.0 32 ............................ AACTTCCGGCCAGGCCGAGGGCGACACTTACA 1175 28 100.0 32 ............................ CGTCCAGAACGTCACACGCTCGCCGTCGATGT 1235 28 100.0 32 ............................ AACCGGAGCCTTCGGGCCGCGTTGGGATCCAC 1295 28 100.0 32 ............................ TTGACTGCTGGGGCCTGACGCTCATCGCGCGG 1355 28 100.0 32 ............................ GCGACCCTGGCCAGGGCGGCGTCGCGCTCTGC 1415 28 100.0 32 ............................ TTGAGCACAACCGGCTGAGCCAGCTGGTTGTC 1475 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 11 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGTCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTGGTAGGCTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 11727-10018 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWZH01000048.1 Pseudomonas aeruginosa strain UQCCR 576652281 AC25 NODE_48_length_36904_cov_37.1754, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 11726 28 100.0 32 ............................ TTGGAAACAGGGCTGCTTTGGATGTACCCAAG 11666 28 100.0 32 ............................ TCTTCGCCGCGCTGGATTCGAAGGAGCGCCGC 11606 28 100.0 32 ............................ ATGTAGCCCAGCCCCAACGGCAGATCGCCAAC 11546 28 100.0 32 ............................ GATCACTCCCCGCTGCGCATGCAGCGTTCCCC 11486 28 100.0 32 ............................ TGAGAGATCGGGCGCTTTGGGATGTGACCAAC 11426 28 100.0 32 ............................ TGCTGGGCTTCTACAACCCGCGGGTGGTGCTG 11366 28 100.0 33 ............................ TTAAAGGTGCGTGATGGAATGGCTCGGCGCGAT 11305 28 100.0 32 ............................ TCAACGACCGCACAGTTACTCAGTACGTCGAC 11245 28 100.0 32 ............................ AAGCGGCAGGCATCGGGTGCTCAGGCATCTGA 11185 28 100.0 32 ............................ ACTCTGAATGCAGGCGCGAAAGCGCCTCACCC 11125 28 100.0 32 ............................ TCGAAGAAATCACCATCAACGCGTAGGAGAAC 11065 28 100.0 32 ............................ GGTAGTACTGGCCGCGATCACGGTGCCGGACG 11005 28 100.0 32 ............................ AGCACTTCGGACTCCGACATGGCCGTGATGGA 10945 28 100.0 32 ............................ GAGGGGCCGTATCGACGGTGATTGATGCGACA 10885 28 100.0 32 ............................ AGCAAGGCATCCGGAAACGGGCCTTGGGTCAC 10825 28 100.0 32 ............................ ATCGCCGCCACCGTCGCCGCCATCACCATCCC 10765 28 100.0 32 ............................ TATACCCGACTTTTCAGCCCCGCCGCCCTCGC 10705 28 100.0 32 ............................ TGACGGGCCGATTTATGAATCAGCCCCCTTTC 10645 28 100.0 32 ............................ TGGGCGATCTTTTCGAGGTGGTAAGTATGCGC 10585 28 100.0 32 ............................ TAGAGGGCGACCTAGAGCTTGCGGCGCAACAC 10525 28 100.0 32 ............................ CGCACGGGGGACGAGTTCGCAGCGCATTCGCG 10465 28 100.0 32 ............................ ATGGATGTCGGAACATCCCAGGTCACGGTCGT 10405 28 100.0 32 ............................ ACTTCTGCGCCTGACGCGTCGGTCATGACGAT 10345 28 100.0 32 ............................ AAGAGGATGACGGTGAGCCGTGCCCGGAATGC 10285 28 100.0 32 ............................ TCGCTCTGCACCAGCGGCGCATTGGATCTGGT 10225 28 100.0 32 ............................ GACTTGAAGCCACTGCGCAGGCACGCCACCCA 10165 28 100.0 32 ............................ CTGCAGTGGAAGACCTGGGTGCGTCTCGCCCT 10105 28 92.9 32 .....................A..A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 10045 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 29 28 98.9 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //