Array 1 32262-30728 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIQP01000011.1 Campylobacter hyointestinalis subsp. hyointestinalis strain S1614a x_contig000011, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 32261 30 100.0 36 .............................. TCCAAGCTGTAGCGTTTTTATCTTTTGCAGGTCGCA 32195 30 100.0 34 .............................. CAGAGCTAGAAAAAGAGTTAAATACCAAACTAAA 32131 30 100.0 36 .............................. AGAAAACTTGCCTGAATGGCTTGTTGAAAAAGTAGA 32065 30 100.0 35 .............................. GGTCTAGCTTGGCATTACAAAACTTATTCTAAAAA 32000 30 100.0 33 .............................. ACAATACTATGTCCGCCATCACTACTATATTCA 31937 30 100.0 36 .............................. TTTGTCAGAGGCTACAAGCTTAAGCGACGTCGCGAG 31871 30 100.0 35 .............................. CTGCCTAGCACTTTGTCGATGAGGATTAAACGGAA 31806 30 100.0 35 .............................. GTTTAGGCTTGATAGTAGAATACGTGCCTGACTGG 31741 30 100.0 36 .............................. CACTCATACTCATCATTTAAAATTTTGCAAAGAAAA 31675 30 100.0 35 .............................. AGCTATTAAGCCTTTTTACCTCTCATTTGATACGC 31610 30 100.0 37 .............................. TCCTTTTGAAAATGAGAGATTTGTTTTTTAATTCTTT 31543 30 100.0 35 .............................. AGTGTAATAGTTGAAAATATGGAAATGCTAGATAA 31478 30 100.0 37 .............................. GGTAAGGACAAGAGAGTAGCCAAAGACGTGATTACTT 31411 30 100.0 37 .............................. TTTTAAAGGCGGTATTTAAAGGGACGTTAGGCGATGA 31344 30 100.0 34 .............................. CCTATTGTAAATATCAGCGGTGGAGGATTTATTA 31280 30 100.0 34 .............................. GGTATCGAGTTTATCCGCGGTTTTGACAAAATCA 31216 30 100.0 36 .............................. GGGCTATGGATAGTAAAATGAATTCAGCTAAAAATA 31150 30 100.0 35 .............................. AAGCTACTTCAAAAAAGCGGAGCTATTAGCAATTT 31085 30 100.0 36 .............................. AAGCAAAGGGGTCATAATATAGCTTTGCTCATTTTC 31019 30 100.0 34 .............................. CAACACCTGTGATAGAATTTAGTGAATAGGATTT 30955 30 100.0 36 .............................. TCAATACTCACGCATTTACTGCTTTCATTCGATTTA 30889 30 100.0 35 .............................. TGAGATTTGGCTAAAAGACGCAATGGGTGCAAGTA 30824 30 100.0 37 .............................. ATTTACGATTTCGAAGACGCGCTAAAAATGCAAGAGA 30757 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 24 30 100.0 35 GTTTCAAATCCTAAAAGGATAAATTTATAC # Left flank : AGCTATTGGCTCAAGTATAGTTTTATAAATGCTTTCCATATGGTTATTATAATATAAAAAAGTAAGCTCCAAATCCTAAAAAAGGTGAATTTTATACCATTTTGGGTTTAATGAGATTTTATCTATGGATTTAAATGAATTTATAGATTATTTTGAGATAGCAAAAAGGATAAATGAGGCTTAAAGCTTGATATCTTTATATCTTGCATCAGTTTTGCCAGTGTAAGGCTTTGAGCAGCTAAAATCAAAATGACAATAAAATTTTATTAAAGCAAAAGCCAAAACCATAATAATAAAACTAAACATTTATAAGCCTTTTTTAAAAATAATATCATAAAAGGATTAAATATGTCAAATGCTACTTTAACCTTTGGAGTGGATTTAAGTGAGTTTAATAGTGCTTTTAATAAAATTAACAAAACAGCAACCACCCTAAGCGATGCCCTAGATAAAAACATAAAAACAGCACTAACAGCGATAAAAAATGCAAATCACAAAAA # Right flank : AGCAACAAAAACAGCTAAATTTAGTACTTTGTACCAAGTTTTACTATATTTATTTTACTAAAAAATGGCTTAATATAGTATTTATAAAATCATCAAATAAAGCATTTAAGCTATTTTATAAATCTTAAATATAGCTTTATCAAGTTATTTAAAGCAATTTTTTCTTAAGTATTTAGGCAAAAGTTGATCCATAAATAAATCTAACTGAACCATATTAAATCAAAATAAAAATAGCTATAAGGCAAATTTTAAACTCGCTAAACGCTTGTAAATTATTTTATTTTTTCATAGTCTATCAAGCCGATTATACCGTTTTCTATTTTTTTATGACAAGCCACGCAGTTTGCTTTGGATTTTACATCTTTTCTTAAAAATACTTTTTCATCTATCTTTCTATGCTTTTTTATCCAGTATTCATTTTGAGTTATGGCTATATTTTGGTCGTTTTTTGCATATTTAAGTATGTTAAATGCAGTTTTATCACCCCTTGTCTGAGCAGA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAAATCCTAAAAGGATAAATTTATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.00,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [76.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //