Array 1 1040-3004 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEWA01000003.1 Salmonella enterica isolate STY179, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 1040 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 1101 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 1162 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 1223 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 1284 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 1345 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 1406 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 1468 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 1529 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 1590 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 1651 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 1712 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 1773 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 1834 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 1895 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 1956 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 2017 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 2078 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 2139 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 2200 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 2261 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 2323 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 2426 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 2487 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 2548 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 2609 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 2670 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 2731 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 2792 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 2853 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 2914 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 2975 29 96.6 0 A............................ | A [3001] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5320-6812 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEWA01000084.1 Salmonella enterica isolate STY179, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5320 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 5381 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 5442 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 5503 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 5564 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 5625 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 5686 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 5747 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 5808 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 5869 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 5930 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 5991 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 6052 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 6113 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 6174 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 6235 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 6297 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 6358 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 6419 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 6480 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 6541 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 6602 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 6663 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 6724 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 6785 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //