Array 1 462559-464294 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGDP01000002.1 Salmonella enterica subsp. enterica serovar Muenster strain ARWAIB .SLX_12186.D702_D507.HJ72NBBXX.s_1.r.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 462559 29 100.0 32 ............................. CTAACCCGCCATTACGGCGGGTTTCTTACAGG 462620 29 100.0 32 ............................. CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 462681 29 100.0 32 ............................. TAATTTGCGGAGTTCGCGTAACTCACACAATG 462742 29 100.0 32 ............................. TAATTTGCGGAGTTCGCGTAACTCACACAATG 462803 29 100.0 32 ............................. ATCAATATTAAACTCATGACCATGAGCAGTCG 462864 29 100.0 32 ............................. AGCTGTCGCCTGGCGAGTGCTCGACGCTCAAT 462925 29 100.0 32 ............................. GCTAAATGAGTATTACGGCACGTCTTACGGTT 462986 29 100.0 32 ............................. GTGCCGCTGATTTTCGTAACGCCTCAATGTAT 463047 29 96.6 32 ............................T GAGCCAGACTGAATTTTATGAAGAAATAGGTA 463108 29 100.0 32 ............................. GATTTTCGATAACGCCGCTTCAGCTCACTGGT 463169 29 100.0 32 ............................. AGCAAAAAACGTGGCCGCACGAACGCGGCCAG 463230 29 100.0 32 ............................. TTTGGTGATGCGATCGCCCCTTGTTCAATGAT 463291 29 100.0 32 ............................. CGCTGTGCGGTAATTACCTTTGAATTACGCAT 463352 29 100.0 32 ............................. CCAACGGTTTCCGTTGGCTTTTCACCTTCAGC 463413 29 100.0 32 ............................. CGCCCCTACAATACATCCTGATACAACAACCG 463474 29 100.0 32 ............................. TTCTGGCGGCAGAGATAGTTAAAATAGTTGCA 463535 29 96.6 32 ............................A AAAAACGGGCGCTGCGGGTCATTTTCGAAAGC 463596 29 96.6 32 ............................T GACTCATACTCGTCTGCGCCCTGCGCGCAAAA 463657 29 100.0 32 ............................. GCTAATTTATAAATCAAGTTAAAGCTTGATTA 463718 29 100.0 32 ............................. GCGTATGAGGGCGCGCAACAGGCGATGCGTGA 463779 29 100.0 32 ............................. TCTACGGGCGCACAGCGAAAACTACCGAGGAG 463840 29 100.0 32 ............................. GGCGGCAATATCCATCACTCAGCACCAGGGAA 463901 29 100.0 32 ............................. ATTTAATTGCGTCATAATATTAATTCCTGTAT 463962 29 100.0 32 ............................. GGTGAGAACAGGGTGCATGGGAGGGAATAATT 464023 29 96.6 32 .....T....................... CGTTACAGCCAGTTCATGGAAAGTTTCAGGCA 464084 29 100.0 32 ............................. ATCCCAAAACATCTTTCCCTGGTTCCTCTCAG 464145 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 464206 29 96.6 32 ............T................ TACCAACAATTCCGCGTTACGCCAACGGTAAC 464267 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 29 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACAGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATATGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGATGACCCGTCCTGAATAGCGTTGACACGTTCCAGACTTAAATCCGGAGAACGTGATGATGACTGAGTTCAAACGCACCCAACGCGATTATCCTCTATCCTTTAAAATAGCCGTCGTTGAGCAGGTCGAAAAAGGCGAGATGACCTATAAACAGGCCCAGCAGCGATATGGCATTCAGGGGCGCTCCACCGTACTTGTCTGGCTGCGTAAATATGGCCGGCTTGACTGGAGACCCGGACTTCCTGACCTGGTGAAGAGGAAACTGCCTGTGGCTCAGACAACTATCCCGCTGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 240158-237627 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGDP01000007.1 Salmonella enterica subsp. enterica serovar Muenster strain ARWAIB .SLX_12186.D702_D507.HJ72NBBXX.s_1.r.7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 240157 29 100.0 32 ............................. CAGCTTTAGCATCGGTCGACAGCCCATCTGGC 240096 29 100.0 32 ............................. CGTCCTTTACATCCCAGACCACACTAACGTCG 240035 29 100.0 32 ............................. CACTCGCTGGAGCTGGTTGTCGCTATCAGCAA 239974 29 100.0 32 ............................. ATGAATCTGTAATTCGTTATAGCTCATCATTG 239913 29 100.0 32 ............................. ATACGCTCAACCTAGCTCTTACTCAACTACAT 239852 29 100.0 32 ............................. GGGCGGGTAACAGCGTGCTTGGTTCTGGTAAC 239791 29 100.0 32 ............................. AGAAAAACCGCTTTGTAATTACTGGTCATGTT 239730 29 100.0 32 ............................. CGTGTCAGCCAAGGTGCAACGCTACTACGCAC 239669 29 100.0 32 ............................. GAAGGTGTTTTTTATTCAAAAGATAGGATACC 239608 29 100.0 32 ............................. CCAGTTTCTAACGATATCGTCCACCAGCTTCG 239547 29 100.0 32 ............................. TATGACTAATGCACAGTTAAAACGGGTATGGG 239486 29 100.0 33 ............................. CAAAATGTGTTGTTATGATGGTAGCCTTCAGAC 239424 29 100.0 32 ............................. TGTTCCGATGCAGCGCTTACAACGATGGGGAG 239363 29 100.0 32 ............................. TCAGCGCCGGCGATCGGGCCGCCGATTTTGTC 239302 29 100.0 32 ............................. GGCATGTCGTGGTTCAGGATGAGAAAATCCCC 239241 29 100.0 32 ............................. ATATTCAGGAGCGTATCGTGGCCGAGATCGCA 239180 29 100.0 32 ............................. CGGCCCCGTATAAATCTCGTGGCGCACAAATG 239119 29 100.0 32 ............................. CTCGCGCATTGTCTTTTGATCCCATAGCGTAT 239058 29 100.0 32 ............................. CGCATTCAAATGCCGCGGCATGACCAGCAGCA 238997 29 100.0 32 ............................. AATTGGTGTGGCCTGGCTGAAATGTCGGGCGC 238936 29 100.0 32 ............................. GACGATTTTAACGCCGTATCCCGTTCTTATAA 238875 29 100.0 32 ............................. CCGGCCGCGATCGCGTCTTCCAGGGTGATGAC 238814 29 100.0 32 ............................. ACCCCGCATAGTCCTTGTCGTATAAATATTGA 238753 29 100.0 32 ............................. GCGATCTTAAATTTGCCGCCGCGTAATTTTTG 238692 29 100.0 32 ............................. CGCCCACCCTGAGTATTATCACTACTCCGGAC 238631 29 100.0 33 ............................. CCAGCGAGCGCTGGCTTCAGGATGGGGTTAGGC 238569 29 100.0 32 ............................. GGGCCAATAAATGACGCTAAAACGCGCATATA 238508 29 100.0 32 ............................. CCCTGGTAGAACTTTATACGCAAGCGCTTATG 238447 29 100.0 32 ............................. TCTCTACACAGGAGCACAGGACATGAATAGCA 238386 29 100.0 32 ............................. TAGCCGTCATTACAGAATTAATTACACGTGAA 238325 29 100.0 32 ............................. CGATTGTCCAGATCACATAAATTTGTATAAAA 238264 29 100.0 32 ............................. CAAATGGATTAGTGATAGCCTCCTTTTATTAT 238203 29 100.0 32 ............................. CATTTTCTCGCACTCTGTCTTGGTCAGCTTCT 238142 29 100.0 32 ............................. AGCGTCTTTCTGCTCTTTCTTGGAGGCTATTT 238081 29 100.0 32 ............................. CCGCTGGCGGTGAATACCATGCGGCGTATCGC 238020 29 100.0 32 ............................. CATGGATTTGCCCCAACTCATGGCGGCTGGCT 237959 29 100.0 32 ............................. CGTTCTTCCAGCACATCCTGCGGCTGCACGAC 237898 29 100.0 32 ............................. TCACGCGGGCCCCCTTATTGGGTCGGGCAGGT 237837 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 237776 29 100.0 32 ............................. CGCTGATATTGTTCGCGCAGATCGTCGTACTG 237715 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 237654 28 82.8 0 A.....................-.C..GT | ========== ====== ====== ====== ============================= ================================= ================== 42 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCTAGATTAATGACCAGCAGCGTATTGTTCTTCTCAGCGTCACTCATTCGTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //