Array 1 971960-972775 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP041029.1 Riemerella anatipestifer strain WJ4 chromosome, complete genome		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                                	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	===============================================	==============================	==================
    971960	    47	 100.0	    29	...............................................	CTATTTTGTTTTTTAAGTGTGAATTGTGC 	
    972036	    47	 100.0	    30	...............................................	TTCTACAAAGTCTAGCCACGCACCCATAGC	
    972113	    47	 100.0	    30	...............................................	ATATCACGAAAATTTAAAGTTTAGCGACAC	
    972190	    47	 100.0	    30	...............................................	AGCCTCTAACTCATACGCACAGGCACAGGC	
    972267	    47	 100.0	    30	...............................................	CGACAACTTTTTTTGGGTGGCGCCGCCAGA	
    972344	    47	 100.0	    30	...............................................	TTTCGTACATAAATTACGCCTCGTGCGTGT	
    972421	    47	 100.0	    30	...............................................	TCTTTATACTAAGAGCATTTAGCAACAATA	
    972498	    47	 100.0	    30	...............................................	TATTTTCCAAACAGGCGATTTGGCGGGTTA	
    972575	    47	 100.0	    30	...............................................	TTTATCGCTAAAATTATTAAGGGCAGGAAA	
    972652	    47	 100.0	    30	...............................................	TGGCTTGTTCTGATACAGACGCATTTCTAA	
    972729	    47	 100.0	     0	...............................................	|                             	
==========	======	======	======	===============================================	==============================	==================
        11	    47	 100.0	    30	GTTGTGAATTGCTTTCAATTTTTACTATCTTTGTGATAGTTCGCAAC	                              	       

# Left flank :   ATCTTTGTGGTAGTTTGTAGCTTAAATTTATTTTTTATGAAGTTAGATTTTGAGTTCAAAATCAGTTTATGAAAATGAAAAAGGTTTTAAGTTTGTTGCGAAACTTAAAGCCGAGATGAAACAGAAAATTCCCAGTCTGTTATATCCTGAAACAAAGGAGGCTTTGTCCCCCTTACTTCTAAAGGCAAATTTAGAAATATTTTTTCAAATGAAAGAATTTATAAAATTGATTAAAAATATTTTCTCGAAAGAACCATTTGAGCAAGATATAACTATTAGATTTAGTTTATCTTTAGAGCAGATAATATTTATTTTTTAGCTTTAGCAGGAATGATATACATCTTCTTAAAATAATATTATGAAAATAGAAGATATACATACCTCGTGGATACAGGAACAGATAAAAGAGCTAGGTATTAAACGAAAAGACCTAACAAAAGACCTGTTACTAGATAGAAGTTATTTAAGCCATCTGTTTTCTAGTGATGACAAACCGCATA
# Right flank :  CCTCAAAAAATAAACCCGTTGTTTTTCAATGGGTTTTGCTTTTTATTAGGATTAGATTTTTCACTATTTCTTGTCTATTTCTACTTTAGTAAATCCTTTTTTCTGTTTCTAAAAAAGTTCTAATTGCTGATAGGTTGGTTTGGGTTCTTCTTTAGCTCTCGCAAAGAAAATTTCTATATCTCCAAACTGTTTATCTGTAATACTCATGATAGCCACCTTACCGTGCTTGGGAAGTATTGATTTTACTCTTTTGATGTGTACTTCTGCATTTTCACGACTTGGGCAATGCCGTATATAAATGGAAAATTGGAAAAGACTAAACCCATCGTCTTCAAGCCGTTTTCGGAATAGCTGAGCCGCTTTACGCATCGCTTTGGTTTCTGTTGGTAAATCATATAACACCATAACCCACATAACTCGATAAGCATTAAAACGATTAAACTTCATAAAACTCAGGCACAGATAGTTGTCTTTTTTCTCCGGTATAACATTTATAAACA

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTGTGAATTGCTTTCAATTTTTACTATCTTTGTGATAGTTCGCAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         R Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:68.09%AT]
# 	Reference repeat match prediction:         F [matched GTTGTGAATTGCTTTCAATTTTTACTATCTTTGTGATAGTTCGCAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-6.70,-6.30] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [65.0-73.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.87,4.5   Confidence: LOW] 

# Array family : II-C [Matched known repeat from this family],   
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