Array 1 79880-78125 **** Predicted by CRISPRDetect 2.4 *** >NZ_POQF01000030.1 Streptococcus suis strain 82 SS_0082_Contig30, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 79879 36 100.0 30 .................................... GCTAGAAAATATCAAACGAGAAAAACAGTT 79813 36 100.0 30 .................................... TTCAGTTAAAGACCAGGGCAAAGGGCTGCA 79747 36 100.0 30 .................................... TTGATGTAACGTATGCAGAACCATCACATT 79681 36 100.0 32 .................................... CTGTCGTTTGTCCACAAACAACAATAGACCCA 79613 36 100.0 31 .................................... ATTGGAAGGCAAGGCTTATAAACTTGCAGCA 79546 36 100.0 30 .................................... AGTGCTTGATGTAAGCAAGTAATTGTGCCT 79480 36 100.0 30 .................................... TCAGCGCTGGAAGATAAGGAAGAAGAATGC 79414 36 100.0 30 .................................... CCGAAGAAAAGAATTTCAGAAGTGCGCAGA 79348 36 100.0 30 .................................... TAACGATAATGGCGACACATTAACAGAAGA 79282 36 100.0 30 .................................... TTTAAGATAAATATAGTGAAGTTCTTTGTA 79216 36 100.0 30 .................................... ACGACCCGCTCCCTTGTGCTTCTCCGTACC 79150 36 100.0 30 .................................... ATAGCCGAACCTTCTAACGACAAATGCGTC 79084 36 100.0 30 .................................... GTTACATAGCCATATTCATGTCGTTTTGCA 79018 36 100.0 30 .................................... AGTTTCCGACGGTTGACCGTTTTGTGAGTT 78952 36 100.0 31 .................................... TTTCCCACTTTGCAACAGTTGGCTGTTCTTG 78885 36 100.0 30 .................................... TGAGATAGTAAGAATTTTGCTTGTCTCACA 78819 36 100.0 30 .................................... CTATGATGCCTGTACTTAATTCTTTCGCCA 78753 36 100.0 30 .................................... GCGTCGGGGCTTTTGCCTTTTGCTGTGCTT 78687 36 100.0 30 .................................... TCATTTTTTCTCATTCCAGTGAAGGCTAGC 78621 36 100.0 29 .................................... TCTTGAAAGCTAAGCTAACTCCAGCAGGA 78556 36 100.0 30 .................................... ATTCTGTTATCTGGTTAGATAGTGCTAAAT 78490 36 100.0 30 .................................... AACGGCTTTATATCAGAAAATGAATAAAGA 78424 36 100.0 30 .................................... TAAGGAGACTTTGGCTGGGGTACATGGTAA 78358 36 100.0 30 .................................... AAGAGCCTCACCCCCTTTCCTTGTATGATA 78292 36 100.0 30 .................................... TATGTGGGTATATTACCTGGCTTCTACGAT 78226 36 100.0 30 .................................... TCCTCAGAAAGGGAAAACAGAACTTATCCA 78160 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================ ================== 27 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Left flank : GAAAAACCAGAAGTGAAATCAATTATTGAAAAATTAGCAAATTCTATTACTGAACTAATCTCTTATGAATGTCTAGAAAATGAGCTTGATTTGGAGTATGATGAGATTACGGTTTTGGAGTTGATAAAGGTGTTAGGGGTCAAAATTGAAACTATCAGTGATACGATTTTTGATAAAATTTTTGAGATTTTACAAGTTTATCAATTTTTGAATAAGAAGAGATTTCTTGTCTTTATCAATGTGTTATCTTATTTGACGGTGGATGAAATTCAGAAAACTAGGGAGTATATTGAACTTTCCAATATGGATGTTCTTTTTCTAGAACCGAGAAAAAGAAAAGGTTTCCCTCAGTATGTTTTGGATAAAGACTATTTCTTACTATCGGAAAATATGGTAAAATAAATACATACAGTACAAATATTAGAAACTATTCGAAACTGAAGTCTGGCTGAGACGAATGGCGCGATTACGAGATTTTGTGACAAAAAATAGTCTACGAG # Right flank : CGTTAAAAGACAAATTGATAGGGTAGTTAGTTTTAGAGTTGTGTTGCTCTAAAAAGTTCTTTTAATTCTTAAAAGCAATGTAGCAAAAATATTTAAGTGTCAAAAAGAAAGGGGATTGTAGATGGATTCAAAATCAATTATTATAACGTCTGGTTATAACAGTAGTAGTGAATATTTTAACTTTAATCATCAAAATAATTGAAAGTAAAAAGTATAGATGAATTTGATTTAAGCTTCATTTTTTTAGGATAAAAACTAGTGCACAGACAAGTAATTCTCTACCATAAACTTTCAAAGTTAAAATGATGATTAACAACATCCAATTTTCCTCCAAGATTTCTAACTGACTCTTGCCCCACCCCCCTTTTCCATGCTATACTAAATATTATCGTTTTACTTCAAAGGAGACAAAGATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAATTTGTGACGGACGGGATGATTGTTGGACTGGGGACTGGCTCAACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //