Array 1 61168-61412 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXXW01000010.1 Pseudoalteromonas piscicida strain S2040 contig0010, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =================================== ================== 61168 35 100.0 35 ................................... CCATTATTCCAACCCAAAGATAGGGTTTGTCCTTT 61238 35 100.0 35 ................................... CCTCTTGCGCAAGAGTTGCGCAAAATAAAAATAAA 61308 35 100.0 35 ................................... CCATGGGTTGCGAAGTTAGCTGCCATACTTTCTCG 61378 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== =================================== ================== 4 35 100.0 35 GTTGCAGCAACATTTGCCGTAGAGGCAGTAGAAAC # Left flank : AGATTTAGCAAAAAATGAGATCTACCAAATAAATTTGTGAAGCTTGTCATTTGTAGGTCGTGATTTATCACGACACAGAATTTCCGCCGCTTAAGGTGCGATATAAAAACCAAAAAGATCGCGGGGTGAACCCACTTTTACTCGCTATAAGTAAACGCCATTTCAATAATCTTGTACCTTTTATTTTAGGGTGCGTTTTTAACACTTTTTTTGAGGAACTTATACAAAGAAACAAAGGGTTATAAGCAAAAGTTGCTACTGTTCTGGATGAACCTATTCCCTAATTTAGGGATTTTTTAAAAATACTATAAATATCATACTGTTAGCTTAAAAAGCCGCCTTTAGGTTCATCCAGTTCAATTAAATCAATAAGTTAGCCTAACTTTTTACTTTCAAAATGGCTGTTTTTTGCTAAAATCAACGCAGTTTCTTGATTAACGCTGGAGGTTCATCCAATTAGCCGCTACAGGCCACGCCAGTCAAGGGCTACAGAAGGTAGG # Right flank : CTTTGGTTTTGTGTTTTTGCTAATCATTTTTTGGTTGCAGCAACAAAAGATCGCGGGGTTCACCCGCTTCTACTCGATAGGGGCTAAGCGCTGGGGGTGAGTTGACTACCAAACCATAAAACGAATCGCAATGAGGACATACACTGCCCTCTATTATTCATATTCACACCCTTCCAACGCTAACAGTCTAAAAAGTTAAAACACGACAAAAGATAACAAAAAAAACAATTTGGCAACAAAGCATTCCAAACAAACACAAATTACTTTATGCTGATTGTTAAGGATAGATTCATCACACAAGGACACCTATGTTTGTTGCACAAATCGAATTTAAGCGAATTCAAACTTTTTTGTTTTCTTCCTCTCGTCTGCACGATATGGTTGCCGCCAATGCTTTACTTGCTAAGACTATTCGCTACGATCTGGTTGTCGCCGCCATAGCAATAGAAAAAGCCATACTCCCAGACAAAACGCTCCTGTGCGGCAACGACTCAGACGCA # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGCAACATTTGCCGTAGAGGCAGTAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.10,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 2 73962-74776 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXXW01000010.1 Pseudoalteromonas piscicida strain S2040 contig0010, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================== ================== 73962 35 100.0 35 ................................... AAGAACATAAAAGTAGAATAGTTATAAGTTTAAAT 74032 35 100.0 38 ................................... ACTATTTCACTTCTTTGCGGGCGTAGGCGGTCATACTA 74105 35 100.0 34 ................................... ATATGTATTTAACGATTGAAGAATGGTCATGATT 74174 35 100.0 35 ................................... CTTTTGAGTTTGATTTAATAAGCATTTTTGTTCTC 74244 35 100.0 34 ................................... CCTTTTGTCCATATACTTGCATCATCATTGCTGG 74313 35 100.0 35 ................................... AGATCAATGGCATAACGCTGGATCAACTTTTCTTC 74383 35 100.0 36 ................................... TCATATTAAATATCCTGTAGTTGGAAACTTCATTAG 74454 35 100.0 35 ................................... CCATACTGATTAAAACGCATGAACTAAATTGTTTA 74524 35 100.0 43 ................................... ACTAATCCGCCTTTGTGATATTCAAACGTTGCCTTGTGGAAAA 74602 35 97.1 35 ........G.......................... ACAACATCGGCATTGTATGCGTCTTGTGCGTACAA 74672 35 100.0 35 ................................... AGATTTTGCTCTGCTTTTGCTAAGAGAGATATTTT 74742 34 94.3 0 ..............................-..T. | C [74770] ========== ====== ====== ====== =================================== =========================================== ================== 12 35 99.3 36 GTTGCAGCAACATTTGCCGTAGAGGCAGTAGAAAC # Left flank : CGACTGCTTTGAGTGTGGTTGTCGTTGAAGCAGTAGAAACGAATTTGTTTTTTCTAGGAGACCATTTATCTTTAAGTTGCAGTAACATTTGCCGTAGAGGCAGCTAAATCACAAAAGATCGCGGGGTGAACCCGCTCCTACTCGGTATGAGTAAACACCATATTAAAAATCTTGTACCTTTTATTTTAGGGTGCGTTCTTATCACTTTTTTTGAGGGTTTTATTCTAAGAAACAACGGGTTATAAGAAAAAGTTGCTACCGTTCTGGATTAACCTATTTCCTAATTTAGGGATTTTTTAAAAATACTATAAATATCATACTGTTAGCTTAAAAATACGCCATTTGGTTCATCCAGTTCAATTAAATCAATAAGTTAGCCTAACTTTTCACTTCCAAAATGGCTGTTTTTTGCTAAAATCAACACTGTTTCTTGATTGGCGCTGGAGGTTCATCCAATTAGCCGCTATAGGCCACGCCAGTCAAGGGCTACAGAAGGTAGG # Right flank : CAACAAGATCGCGGGATGAACCCGCTCCTACTCGATTAATATGATTGGAGCGGTTTTAACTAAGCGAAAGGAAGTTGCTAGCGGTGGCTAGCAACGTGTGATTAGACCGAGACTGGCTAAAACCACATTTTATGTCCCCAACCAAATATACAAATAATCCCAAATATCAGTAAAATAAGTGACAAGCGACTGCCCTTAGGTTGGCTTTGTGTTTGGTGTGTGACACTGGCTTTTCGCGCAATTTGTTTGTAAGCACTAAGATTTGAATAATAAACAAAAGCAGAGGTCGTGAGCATCACCAAACCAATAAATACCGCATGCCAATCACTCGAGAAAAACCGAATTGGCTCACCATAATATAGCGTGGTCATTTCTACAAAGTTAGTGCCAAACACGCTGGCAATAAAAATAAGTGCGGTGCCTAACGTGGCGATGTTTTTTATCTTATTTTGATGCTGCTGTTGTTGCTCCCGTAGCTGCTTGGCTTCTTGTTCCATTTT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGCAACATTTGCCGTAGAGGCAGTAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.10,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 3 77601-77285 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXXW01000010.1 Pseudoalteromonas piscicida strain S2040 contig0010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================ ================== 77600 29 100.0 44 ............................. ACTGAGTATGTCACAAAAGAATTACCTGAAAGCACATAGTTTCT 77527 29 100.0 43 ............................. AAACAAATCAAAAACACATCCTAAAATACACCAAGATGTTTCT 77455 29 100.0 42 ............................. CTTTCGTTTAACGATAGCGGAAACGTAATCGCAATTGTTTCT 77384 29 100.0 42 ............................. TGAATTCTAATCAAGAGTTACTTTGTATGAGTCATAGTTTCT 77313 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ============================================ ================== 5 29 100.0 43 ACTGCCTCTACGGCAAATGTTGCTGCAAC # Left flank : GCTGGTTGACTACCAACGACTAATCGTTGTAGTTGTTGACAGAGGCGCAGGGATGGAAGAAGAAAAGCTAGCAAACGCAGTACTGCCATTCTTTTCTACTAAACCCAGTGGCACAGGCATAGGACTTAGTATTTGTAATGAAGTTGCCATTGCCCACGGTGGACAACTTAAGCTATTTAATCGCGAAAAGGGCGGACTAATGGTGCAGTTTGATCTGCCTCTCGTTGCACCTAAAGCATAGCGTTGTTATTGCACTAACCCATATCGGGTAGGAGCGGGTTCACCCAGCGATCTTTGGGTTTTAATGCAATACATTGTGCGGTGGAAATCTTTTTGTCGTGATAAATCACGACCTACAAATAACGAGCTTCATAGGTTTATCCTGTAGGTCTTGCTTTTTTGTTAATCTAGGGTGCTCACGAGGGCTTTTTAACGCTGTGTAACGTCTTAAACACCAATCATCATTTCTAGGTAGCGATAAACAATGCACCTAACCTCAC # Right flank : CCTACCTTCTGTAGCCCTTGATTGGCGTGGCCTGTAGCGGCTAATTGGATGAACCTCCAGCGCCAATCAAGAAACTGTGTTGATTTTAGCAAAAAACAGCCATTTTGAAAGTAAAAAGTTAGGCTAACTTATTGATTTAATTGAACTGGATGAACCTAAAGGCGGCTTTTAAAGCTAACGGCATGATATTTATAGTATTTTTAAAAAATCCCTAAATTAGGGAATAGGTTCATCCAGAACCGTATTACCTTTTATTTTTTAAATTATTGTTTTATTTGCAAAATACGTACAAATATAAGACTTAAAACAAGCGAGGTTTTTTTGAGTCATTGGCTTTTGTGAATATCACTTTACCTTCTTCAAGAACTTACCTATTCTGCTAACTCAATTAACATGATGCAAGGAGCCAGTACTCGATGGAGTTAAATCAAGAAGCAATCACCAGCTATCTTAACGAGCTGCTATCAGACTCACATTCAGACTTACTCAAAAGTGCAACC # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACTGCCTCTACGGCAAATGTTGCTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.50,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA //