Array 1 186146-183185 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIXBV010000005.1 Salmonella enterica strain LB30 contig00005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 186145 29 100.0 32 ............................. CCCCACAAATCACTGGTCGATTTCGTCGCACG 186084 29 100.0 32 ............................. GTTGCGACTAAACCGGACCAGCGCCCGCCCAC 186023 29 100.0 32 ............................. CCAGTGCTCGCTTGCTTCTACCCGTCCCGATC 185962 29 100.0 32 ............................. GCGGTTTTATTCGGCAGGGCATTGAATTTAAT 185901 29 100.0 32 ............................. AATTATCTATTTTTCTGGCCCGTTTTCAATGC 185840 29 100.0 32 ............................. CCCGCGTTTTGCGTCAGCATATAGCCAATATG 185779 29 100.0 32 ............................. GCTTTGCATACGTCACTCATAGACAAATCACG 185718 29 100.0 32 ............................. CGATTCTGGTAACGTCGCTGTACTGCCTGACA 185657 29 100.0 32 ............................. GGCGCATGAAACAACCGGCGGGGATCTCTATT 185596 29 100.0 32 ............................. ACAGCGTTAAAATGACGCCCGACGTTGTGGTG 185535 29 100.0 32 ............................. AGGGCTAACACATCACCATTATTACCAAATTC 185474 29 100.0 32 ............................. GACATTGCCCGCTGGGATGCGCGGCAACTGGA 185413 29 100.0 32 ............................. AATTGCCTTTGCTGCCCGGCTCTTCTACGGTC 185352 29 100.0 32 ............................. AGATGAATAACGCGATTTACGAGGTTACGTAT 185291 29 100.0 32 ............................. ATTAAATACCTGGAAAAATACCCCAAAGGGGC 185230 29 100.0 32 ............................. AAAAATAGCGATAACGCGCCAGATCGTGAGGT 185169 29 100.0 32 ............................. TCATTTTTTATTTTCACGTTCGGCTTTCTCAC 185108 29 100.0 32 ............................. TTAAATCGACCTACCTGTTAAACGCGTCAATG 185047 29 100.0 32 ............................. TTCGCAGTAACAGTGTCGTTTTTATAACCGAC 184986 29 100.0 32 ............................. GCGGCATTAATGCGGGATTGTGTTTTCTGAGC 184925 29 100.0 32 ............................. ACGGCAGAAACAATGGCGTCAGTAGCTCAGGA 184864 29 100.0 33 ............................. CAGTCAATGAGACTTTTCACACTGATAATGTTG 184802 29 100.0 32 ............................. CCCCTATTCCTGATCATCGCGCATTTGGCGGC 184741 29 100.0 32 ............................. ACCACCACGTAGCCGTAGGCTGTCGCCAGTTG 184680 29 100.0 32 ............................. GAATTACGTTGCGAACAGCGCGGCGAGAGACG 184619 29 100.0 32 ............................. CGGATTGCATTCAATAAACATGTAAATAGGAA 184558 29 100.0 32 ............................. TTACCGACACCTGCGTGGCTAGCGTTTTTTCG 184497 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 184436 29 100.0 32 ............................. CCTGCGTGCGTGCAACGGGTAACTAAGGGGAA 184375 29 100.0 32 ............................. CATTGGGTAATTATATTCGCAATTTAAGCGAT 184314 29 100.0 32 ............................. ATATTTTAAACCAGACTGACGCGATGATCGTT 184253 29 100.0 32 ............................. CCATCAAAGCTGCTGCGCTGGTGGCATAACCC 184192 29 100.0 32 ............................. ACTACGCGGCATGGCTGAACCCCGGATTCAAG 184131 29 100.0 32 ............................. CCCCAGGCGGTGCCTACGTCGGATGAAGAGCC 184070 29 100.0 32 ............................. CCGTGGAAAGAACCAGAGCGTTGGTTATTGGT 184009 29 100.0 32 ............................. CTCCCAAACCTCTACAGCGCTACCAACAGGAA 183948 29 100.0 33 ............................. GATCGCCCACCGGCATAAACGCGATAGCCGCGT 183886 29 100.0 32 ............................. CTGTTCCCGATCGCTTTATATCGGGGGCCATC 183825 29 100.0 32 ............................. TACCAGACGGACAGCTACGATACCGCTGACGA 183764 29 100.0 32 ............................. GCAGTACTGGCTCTAAATTTAAAACTGGTCAG 183703 29 100.0 32 ............................. TGGCCCACGTGCGCGGAGACGGCAACCGGTTC 183642 29 100.0 32 ............................. TCTCGACGCCAGATTTAATATTAATTCCCGCA 183581 29 100.0 32 ............................. CAGACGTAGAGATTGAGAACACAAATGACTCA 183520 29 100.0 32 ............................. GATTGCTCAGATTGGGAATTTGACCAGCGACC 183459 29 96.6 32 ........................G.... ACTATTTTTCAGGTGAATTACAGCGCCGCAAC 183398 29 100.0 33 ............................. GCGAAAAATTGACGCTATCAGGGAGAGCGCCGG 183336 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 183275 29 100.0 32 ............................. GCCGTGAACGCGTCGCCCGCTTTTTTGTAGCA 183214 29 96.6 0 ............T................ | A [183187] ========== ====== ====== ====== ============================= ================================= ================== 49 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCCTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGATTCGTGCCGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTTTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 203778-202405 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIXBV010000005.1 Salmonella enterica strain LB30 contig00005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 203777 29 100.0 32 ............................. ATTAAATTTTCGGGAACGGCGACGGAATCCGG 203716 29 100.0 32 ............................. AAAATCATCATGGCCAGCGCTGGCGCGCTCGC 203655 29 100.0 32 ............................. AATGATTATATCGATCGACCAATCGATGAGCA 203594 29 100.0 32 ............................. TCGGTGAGACAAATCATTCCAGATTGATCAAC 203533 29 100.0 32 ............................. AATTTAAACAGTAATTTAAAATTGTTAGCGTC 203472 29 100.0 33 ............................. GCAACGGCGGCGCGGCATTCTGCGGTGCAAATA 203410 29 100.0 32 ............................. GATTCCAGCGCGCCAAAATCAGGAGATTCCGT 203349 29 100.0 32 ............................. CCCCCGGCATTCGGCTATGCCTATTCATATGT 203288 29 100.0 32 ............................. TGGTCACTACCGTCTATCTCTTCCGGATACAC 203227 29 100.0 32 ............................. AACCCGGCAGCAGGGGTAATTCATACAGCATA 203166 29 100.0 32 ............................. ATTTGGTGAAGGGCGCATTTGAGGACCCGTTA 203105 29 96.6 32 ............T................ CTTGCAGCCGAATACGGTATAGAGTGGGACGG 203044 29 100.0 33 ............................. GCCTGTCCTGCGTCAGCGTTACCAGCTTCATGC 202982 29 100.0 32 ............................. AAATTCAATTACGACTCGCTGCCTGACGGGGT 202921 29 100.0 32 ............................. ATTTTGAGCGGACGGGAGCTGGCCGAATGACC 202860 29 100.0 33 ............................. CGGTTTTTACTTTTGCTGCATTCCGCCTCCCGG 202798 29 100.0 32 ............................. TCCTGGCAGGAATACAAACTTGTGATGCTGCG 202737 29 96.6 32 .............T............... ACCGCAGGCGCAGCGGCAATATTCTGGTTCAA 202676 29 96.6 32 .............T............... TCGTTTCTGGGAGCGGGTCTTTCCAGTATTGC 202615 29 96.6 32 ...........C................. CAGGGGAAGAGGTTCCGGCCCAGCAGTTCTAT 202554 29 100.0 32 ............................. CTGCTGGGTCGTGTTTGACTCAACGCTCCCCA 202493 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 202432 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 23 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCACTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //