Array 1 270860-268236 **** Predicted by CRISPRDetect 2.4 *** >NZ_MBQY01000001.1 Cylindrospermopsis raciborskii MVCC14 CYLMVCC14_contig1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================== ================== 270859 36 100.0 34 .................................... GTAAACACCCCGGCTTCAGGGCGTAGTATGTAGA 270789 36 100.0 42 .................................... ACAAACAGCTGCCTTTGATGGCTTTCCAATGCTGGCTTTAAG 270711 36 100.0 38 .................................... GGTAATATCCGCGATGGGGTTGACCAATGACGGAGAGA 270637 36 100.0 40 .................................... TTTTCGCTTTTCTTTGCGAACAGCATTCTTCTCTTTTCTT 270561 36 100.0 45 .................................... TTGAATTTACCACAAAAGAAGTACCAGGTACTCCTGAATGGGAGA 270480 36 100.0 39 .................................... ATCAATAACAGGAATAGACTTAGGCAGGCAAGATAAAAT 270405 36 100.0 44 .................................... TTACGGATGTTCTGGGTGCCACCTACCCTGGTGATTAGGTTAAT 270325 36 100.0 39 .................................... AAAAACTCAGATTAGCTTCGCGCAGGTCAGCATTGCTTA 270250 36 100.0 50 .................................... AAACCCCACCCAAAGTGGTGTAAAGATAGAGACGAGCGGCTGTACAGCAG 270164 36 100.0 35 .................................... CTTCTCCCGTAGGATAGGCCTTGCGGGCTTCTCCC 270093 36 100.0 36 .................................... TACTAACACCATTGTGCTATAGCACTTTCTGTTGTC 270021 36 100.0 36 .................................... CTAAGCGCATAAGATAAAAAAATGCCCGATCAGGAG 269949 36 100.0 35 .................................... TATTAGTGCTAGGTGTTACTTTAACAGCACTTTCT 269878 36 100.0 42 .................................... TTTTAATAAAAGTATATCCGCTATATATCTTGGTATAGGTAG 269800 36 100.0 36 .................................... CAAGCAGCTGCTTCTGCCTTTGCGTTTTTCTTTGAA 269728 36 100.0 42 .................................... GTAGAAGCACGATCACCCGAAGAGGTGATAACTCCAGCGCGT 269650 36 100.0 49 .................................... TGAAATTGTTGGTTTTATTATTTTCCCTTCCTCCCAGATATACTCTAAA 269565 36 100.0 34 .................................... GTCAACCAACTCGTTTAGGGTCTTGGAATCAAGT 269495 36 100.0 40 .................................... GCTCCATCTCTTCATTTGATTTCTTAAGAGCTTTTATTTT 269419 36 100.0 34 .................................... GTGATAGCAGCTTTCAGTGATTCCAACTTTTCCA 269349 36 100.0 40 .................................... TAAAATAGAAAGGTTCCCAGTCCCGGAGCCAGTTGTTTAC 269273 36 100.0 42 .................................... GAGCTGTCTCTTTGTCCAAGGAACGTAGCTCTTGGCCGGCGT 269195 36 97.2 41 T................................... TTTGGCGTACCTATGTTCAAAGGATTTTTAGAAGGGTTGAA 269118 36 100.0 36 .................................... TCACCTGTAACAGAAAACTACTATTCTTTGAAAACA 269046 36 100.0 43 .................................... TTGGGACAGCAAGCAGTGCAAGAATAGTAGTAAATGCGGACAA 268967 36 100.0 39 .................................... GTAGTTACTGGAAATCTTATTATTTGCCTACTAAATATT 268892 36 100.0 37 .................................... TTAGTTGAATTATCCATAAGAGTAATTATGTTTTTTA 268819 36 100.0 45 .................................... AAGGTTACATAAAGAGACCTAAAATTAGGCCCTTCCGTTCTGACC 268738 36 100.0 43 .................................... CTAGCCCATATTGTTTTGGTCCGGCAGAAGATTATATAAAGGT 268659 36 100.0 40 .................................... TCTTCAACGGTCTCAATCATAACAGTGATAACGGAGTTAT 268583 36 100.0 38 .................................... CCTGGCAGGCTTCTTCGATCAAAAGAAGAACCTCCTTT 268509 36 100.0 46 .................................... GTCTGCAAACGAAATTTGACCGCCAGCAAACAGGTCGCTTACGCGA 268427 36 100.0 45 .................................... AGGAGAGCGGCACCTATCATACTAAATATGATAGGATTTACAACA 268346 36 100.0 40 .................................... TTTATTTTTACCTCTGTATCTTTTGCTGCAATTTTTACCT 268270 35 91.7 0 .............G.................A.-.. | ========== ====== ====== ====== ==================================== ================================================== ================== 35 36 99.7 40 GTTCTGACCTTCACTAGAAGGTATAGGTATTGCGAC # Left flank : CTACGTTTGAGAACAATATAGAAGCGACTCTAAGACAAAGAGGTTTTACCAAAATAGAACTTGACATATGATGGGTGACACGGGCGATCGCCTGACTTTTACTTGAGTGCGATCGCGAAGCACGCCCTACGGGCGATGGCATTAAACACACCAAAAATCGGGACTGTGTTTTTTATCACGTTTATAATTTATTATTGGAAAAATGGAGGGAGTATAGTTATAACAAGATATTTGGGATAAAATATTGAAAATTCTTATAATTAATGTAATAATAGGGAGGGAAATAAATATGACAATAAAATCAGTGAATAGCGAAAAAATTCCGAAGGTCAAGGAAAATGGCTGGAAGGCTAGTAAAATTGTCGGGAACCTCGGTCCCTTGTCCCATAAGGATTTGAGGTATGTTTTAAGAGTGTATAAGAGGCTGAAATGGGATTTTTTTTCTGACCTTCGGAAAGTGGGTCTAGACAGTAGACAGGGTAAGGGATTAAAATCGAGGG # Right flank : AGATTGACCCAATAGCTTTTAAAAAGGCGTACTTTAGATTTGTTGTAACCTTAACTAGAAAGTGTAAACACTGAATTTACCCCGCTCTAAAATTAATCTTTGAGCGGGGTTTACTTTTGGAAGATCCAATTCCATTCCCAGACGTAGGTTTGCCAACCGCTATTAAACACTACAAAAGCTTTTAAAGTACCGTTTACCAATACCTCAACTGTCTTAATTATTGCCTCTTCCCAAACCCCTTTCATACAGTTCCAAACCACGGCAACCCCTACCATTGGTACTTTTTTCTCTTGCTTAATTCCCAAGTTTTCACTGTCCTGGTCTCGTATTTTGGATTCCTCTGTCCTCTCTCTGTTTTCCAAATGTTGTTGGGAAGACTCACCCGTTATGACTACACCGTTGTTGGGTGGGTCAGTTTTTACTATTTCTCTTTCCGTCCCAAAAGTATTGTCTATATTATATATACCATTTTTGGACGAGACTCTTTCCTCCTGTTTCCA # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTGACCTTCACTAGAAGGTATAGGTATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 2 291271-292913 **** Predicted by CRISPRDetect 2.4 *** >NZ_MBQY01000001.1 Cylindrospermopsis raciborskii MVCC14 CYLMVCC14_contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================================== ================== 291271 37 100.0 38 ..................................... TTAATTCAATAACAGGAGCTGGTGTTGACAACATTGGG 291346 37 100.0 39 ..................................... TGGTGAATTTGCTATATTTATATTATAGTACAAATGTTT 291422 37 100.0 39 ..................................... TTGCTGGCAACAAATATGGCTTAGTAGTTAACAGTACTG 291498 37 100.0 35 ..................................... GATAACAACCCGAAAGCATTGTCCTGTGGTAATTG 291570 37 100.0 36 ..................................... CGATTGTTTCAGAAACAGGTACACGATTAATTACTC 291643 37 100.0 37 ..................................... AAATATGAATTACCCATTTGTCAATACCGAATTTAAC 291717 37 100.0 43 ..................................... TACCGCAAGGGGAGGAAATGCCAAGAATTTTTGTGTCCCATTT 291797 37 100.0 56 ..................................... TGGTAACCAGACTCAACTTGACCACTAGCTCGTTAATGAGCTAGACTCACAAAAAC 291890 37 100.0 44 ..................................... GCTATGGCTTCAGGTTTATCAAAACAAGGTGAGATAGAATATTT 291971 37 100.0 42 ..................................... GAGTTTCTGAGTACATATGCATCAGCCCGCGCGTTTGTTCAT 292050 37 100.0 42 ..................................... TTTTGATCAGTACTATCCAAGACAGTTGCGACATTTGGGAGA 292129 37 100.0 41 ..................................... TCAAGTTCAATCGCTAAACCACTAGCGAGGTCGTTACGTAT 292207 37 100.0 34 ..................................... TAAAGACTAGTTGATTGATTGCACGTCCAATTGA 292278 37 100.0 37 ..................................... TTGATTCACAAACGAGTTCCTGTCCGGTTATGGCCGC 292352 37 100.0 38 ..................................... GGGAATTGAATGGACACAGAATAGAATCTAAATGCATT 292427 37 100.0 35 ..................................... GAGAACGGAGAGAAGTGCGATCGCCTGCGGAGTTC 292499 37 100.0 38 ..................................... TATGCCACAAACTTCATTGTGAGTGCTTGGATAAACTA 292574 37 100.0 41 ..................................... CAAAAGACAGACCAACTCTCTTAGAATTAATCACAAATTCC 292652 37 100.0 38 ..................................... TGTAGTTTTCCCACATTTTATATTTGCACAACTCAATG 292727 37 100.0 37 ..................................... CTGTTAGTTTTGCTTCTAAATCTTGATCGAACTGAAT 292801 37 100.0 38 ..................................... TGTAGTTTTCCCACATTTTATATTTACACAATCCAATG 292876 37 83.8 0 ....................A.....A.AT...TT.. | T [292911] ========== ====== ====== ====== ===================================== ======================================================== ================== 22 37 99.3 39 GTTCCAATTTCTCTTTATCTCCATAGGAGATTGAAAC # Left flank : AGTAAACCTCAACTTTTTGACTTAATTGCTTCCGCTTTACCCACTCGTTTATTAGAGAATGCAACTTATTTAGTTTCTACTACTCTTTTGGAGATTAGATTTGCTGATGAGGAGGTTGTTTATCTACCTAGTCAGATGAATTATTTAATTACCTAAGTGACTTGATCGCGCCTTTGCGAATTTGTTTATGGATTGGTCAGCAATCCTCGTCCTTTTAGATGTGGGGAGTATCAATGTATAAAGGGTATTTTGCGAGGTGATGAAGTTATGGGATTCATCCTTTCAGCTAATTAGGTTTGAAATTGTTGATCTGATTGGCTTTTTGGGTTTCTGTTCCTGCTTTTTTACCTCGCAATTTCTGAACTGCTTGTTGGATAAGGATTTGGGAGATTGTCAGCTCTATGATTCTTTTGCTGTTTAGTGATATACTAGTTGTTGGATCGGTTTGCCTCGCAAGGCTATGCTTTGTGCCAGTCACTGCAAGGTCTTCAGCGATCGCA # Right flank : CGAACGAGAATTTTATGGTGGTTTCCTCAAGAGTGATTCCCGGTCTATGGTAGGATTGAAAAGTATGAAAAACAAAAAGTAAAAAAATGAAACTAAAAATTAAGCCCGTATACTACCGAACTGATATAAAAACTCCAGTTCCTTTCCCGGGTCTGGCAAAGAACATATTACCATATCAACATCAAGTACAAACATATTGTGCTGTATCCAGAAATCAAGATTATGATAGAGCATCAAAGTGGTGTAGGGAATGTGAACTAGTAAACAAATGTAATGTTGCTCATTTTAATCCTTCATCTATCCATAATAGCCTTTGTATTATAAACTCAGCGATAACAGGTGGTGGAAAAACATTGGCAAGTTATGCCCATGCCATAGAACATTGTTTGAATACATCCACAGTAAACAAAGTTTTAGGAGTTTATCCGACGAATGAACTACTTCACGATCAAAAAAGAGCAATTACTAAGCTATTTACACAAATTCATGGTAGGCAACCA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATTTCTCTTTATCTCCATAGGAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.90,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 1 938-2165 **** Predicted by CRISPRDetect 2.4 *** >NZ_MBQY01000027.1 Cylindrospermopsis raciborskii MVCC14 CYLMVCC14_contig33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================================== ================== 938 36 100.0 35 .................................... GGGAAACAATAAAGTTGCCCCTGGGGTCGGGCCGA 1009 36 100.0 36 .................................... GAGAATATTTATCCACAGAGGTGACCCCGCTCAGTG 1081 36 100.0 37 .................................... TACGGCCGTTGCGACGGCTCGCCCTGTGGGAAGAAAA 1154 36 100.0 35 .................................... TCGCACACCTTAGGTTACCTAAGGGAGTTATTTCC 1225 36 100.0 36 .................................... GTTGTGGTTGTTATGGTTGGCTAACTACTCCTCATT 1297 36 100.0 34 .................................... TACTTTTTAAGATATCCGATTACAAAAATATTGT 1367 36 100.0 40 .................................... CATTAAAGAATCAATACGTCAATTTGATAATGAATTTACG 1443 36 100.0 38 .................................... TGCTGCAAGAAGAACTCAAAATAACAAGAGAGTTGCTA 1517 36 100.0 38 .................................... AAAAACTTCTCGACCTCGACGAATTAGGATTTATGAAA 1591 36 100.0 38 .................................... GAGAGAATGTGGGCTTTTGTGGGTTTCAGAGATAATAC 1665 36 100.0 37 .................................... GATACGTCTACGTATCGAAAAAAGATGTTCAACGGTT 1738 36 100.0 44 .................................... ATTAGCTTAGAAGCCCGCGAGTGCTTTCAACAGCCGCTCGGCAA 1818 36 100.0 35 .................................... CTGAGATTAGCTCAATTCCTGTTAATGAATCTTTG 1889 36 100.0 51 .................................... CCTTTCTCGTCTGTAGATTCTATCTTGCTAGCATCTGGTTGAAGGTTAAAA 1976 36 100.0 46 .................................... TGGGAAAATAGCTTTATCAAAGCATTCTAAGTTCAGAATGCGAATA 2058 36 100.0 36 .................................... CTTCATCCACCCACACGCAATAATCATCCGCTTGTA 2130 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =================================================== ================== 17 36 100.0 39 GTTTCCATTCAATTAATGTCCCCAGCGAGTGGGAAC # Left flank : GCACTTACACTCTACTTAGCTTTTTGGGCAATGAACTCTGAAAAGATAGGGATTATTTACCGCCCTAACGCTTACCGTAGAACTTCCAAAGCCTCCTCCTCGGTTTCAAAGATTTTAAATATTGTGTCCATCAATAGTTCTTCAAATACAGATTTGATTTTTGGCGGCATCTCGCAGAGGCGGAAACTGCCGCCCTCTTTGTCAGCATCCCTCATACCAGCCACCAAAGCTGTTAGACCACTCTCATCAATAAAATTTACCTCCCTGAGATTCACAACGATATGCTTAGATAGTTTGCTAATACACTCCTGTAGTTTCAGCCTCAATTGCCAATTAGTGTCTCTATTTAGAGGACCTGCTGGTGTTACAACAATCACCACAAGGCCGTGTCCACTGAAGTCGCCTAAGCGATGGCTTTTTATCTCTATCTGTAACTGACTCATTGTTGCTTCTTTTTCTACCATTTGTAAAGTTGACGTTCACTGGTTGAGCGTAACAGT # Right flank : CCCTCCATTTTAACCCCTTACCCTGTCTACTGTCTAGACCCACTTTCCGAAGGTCAGAAAAAAAATCCCATTCCAGCCTCTTATACACTCTTAAAACATGCCTCAAATCCTTATGGGACAAGGCACCGAGGTTCCCGACGACTTTACTAGCCTTCCAGCCATTTTCCTTGACCTTCGGTTTTTTTTCGTGATTCACTGGTTTTATTGTCATATTTATTTCTATTTCTATTATTACATTCACTACAATATTTTTCAATATTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTCAATTAATGTCCCCAGCGAGTGGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 692-2326 **** Predicted by CRISPRDetect 2.4 *** >NZ_MBQY01000004.1 Cylindrospermopsis raciborskii MVCC14 CYLMVCC14_contig12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================================================================================================ ================== 692 36 100.0 35 .................................... AAAAGACTGCAGTTTACCAAACACCAGAGCTTGTT 763 36 100.0 38 .................................... CCCTTTCGACCTGGGCATCAAAAGCCTTTACCATTTCG 837 36 100.0 38 .................................... CCGACGAATCGGTACGTGCTGACCGCACGCATTACATA 911 36 100.0 42 .................................... CCATCGGCAAAGTACGATGAACAATTAGAGTCCTGCTCTCTG 989 36 100.0 43 .................................... ATATGGTCAATAACCTCTTGGGTGATATGAAAAGAAAAGGTTT 1068 36 100.0 40 .................................... AGCGCGGCTACCTATAGTTATATAGGCATTATCTCCGTTT 1144 36 100.0 38 .................................... CTCTCTATAGCAGCCTTTAGCACAATGAATTTAACCAT 1218 36 100.0 45 .................................... CTCATGGGCCAGTGTGTCACACCAATTAGAGCTGCCAGAGTTCCA 1299 36 100.0 36 .................................... TTTTCAATAGAGCTTTAAATAAAATTCTCAAAGAAA 1371 36 100.0 36 .................................... CAACCGCCAACTGAGAATAATAATTGGTTGACGATT 1443 36 100.0 39 .................................... TTATTCATTACGATAAGCACGACTACTAACTAACTCCCC 1518 36 100.0 39 .................................... GGCCAAAGCCTCAGCGTCGGGGTGGTTATAGAAGTGAAC 1593 36 100.0 54 .................................... TTCTGCTGGTAAGATACGGAAAGGCACCTATAACAGCATGACATCTTGGATCTT 1683 36 100.0 35 .................................... ATAACGCTGGTTGCTTTACGGAAAATTTCATAACA 1754 36 100.0 36 .................................... TTGCAGAAGGATGAAGCTTTTTAGGCTTCTCTTCTG 1826 36 100.0 46 .................................... TCTTCTCTGGGGGTGTTATCCCTGAAACTCTTGTAGAGCTAGAAAA 1908 36 100.0 38 .................................... TTAACACAATATTAACGGACAGCACATTAACTGGTGCT 1982 36 100.0 36 .................................... ACAAATAAAGGCCTTAGAAAGGCCCGCTGAGTGGCA 2054 36 100.0 40 .................................... CTTTTGCAGATCAACAATAATAGATATGATTTTTTCTGGG 2130 36 100.0 124 .................................... ATTTGTACGCCACAAATATTTATTTTTCTTCTGTAGAGATGGATTTCGAGATCTATAATTGAAACCAGCCAGCAGAATCACGAGGTTAGCTTGTAGTGGACTGTTTCAGCTAAAATGAGGCAAT 2290 36 91.7 0 ..............................CA...A | C [2297] ========== ====== ====== ====== ==================================== ============================================================================================================================ ================== 21 36 99.6 44 GTTCCCACTCGCTGGGGACATTAATTGAATGGAAAC # Left flank : GTGCTTTGCAAACGCACGTAGGGAGTACTTCCTTAATGTGCTGGATATTCCTTTACCTCTCCGTTCTCAAGGGAAATTTATCAAGGTAATTGGGTGCGATCGCACATGCTGAGTGCTTTACAAACGTGCTAGGAGTGATTCACAAACAGACCAAAAATCGTGACTGTGTTTTTTATCACCTTTATAATTTATTATTGGAAAAATGGAGAGAGTATAGTTATAACAAGATATTTGGGATAAAATATTGAAAATTCTTATAATTAATGTAATAATAGAAAGAGAAATAAATATGACAATAAAATCAGTGAATAACGAAAAAATTCCGAAGGTCAAGGAAAATGGCTGGAAGGCTAGTAAAATCGTCGGGAACCTCGGTCCCTTGTCCCATAAGGATTTGAGGTATGTTTTAAATACATATAAGAGGCTGGAATGGGATTTTTTTTCTGACCTTCGGAAAGTGGGTCTAGACAGTAGACAGGGTAAGGGATTAAAATGGAGGG # Right flank : ACCTTCCCCAAGGTTTTTAAAAACCTGAAAAATCTAAGGATGATAAACATGCGATCTCACATGGTGAGTGCTTCGCAAACGCGCTGGGAGTGCTTCGCAAATGCACTGGAGTAACTGCCATGCGATCGCAACCGATGTCCCAAAACCACAAGTACAAAACTGACTTTTGTTCTGGAGGTTTTAAGTAAATACTCCCATAATAAGGTTTAAGCTCTTTGGATCCCCCCAACCCCCTTAAAAAGAGGGCTAATTGTTTTGTGTTTAGTTTATGAGAAATTATGGCTGCTTATATTATAATGGATGGGGTGAGTGCTGGGGATTTTATGAAGGGGGTAAAGGGCGATCTCGCAAGTGCGAGTGCTTCGCAAACGCCCGTAGCGAGTACTTTGCAAATGCACTGGATATTCGGTTACCTCCCCTTTCTCAAGGGAAATTTGTGAACATGGTTAGGAGCGATCGCACTTAGTAATTCCTGTCCTTCTGTTCTCAAGGGAAATTTA # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.42, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCCACTCGCTGGGGACATTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 2 3337-7576 **** Predicted by CRISPRDetect 2.4 *** >NZ_MBQY01000004.1 Cylindrospermopsis raciborskii MVCC14 CYLMVCC14_contig12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================================== ================== 3337 36 100.0 37 .................................... GCGAGTAAATACCAGTGGTAGGGTAAGTACAGAATTT 3410 36 100.0 36 .................................... TTCCCTCCAATATTTTTTGTACTCTTCATACGATAA 3482 36 100.0 36 .................................... ATCGATATAAACCACCTCCTTGGATGGAGCGACAAA 3554 36 100.0 33 .................................... CTCAAGGCTGCCGGTTTAACCTCACCAGTGGGC 3623 36 100.0 51 .................................... GGGGGGGATAGGGGGAGGGGTGGTATTGGCGGCTGTACGGGGGTTAAAAAG 3710 36 100.0 38 .................................... GCAATATTGCTTCAGACTCAATCAACCTAGAATTACTT 3784 36 100.0 36 .................................... GATAATGTTGCTATTGACAAAGAATTCAAAGGTGGT 3856 36 100.0 35 .................................... TAAAATATTGCATCCGACTAAGCAGATGCAGTCTA 3927 36 100.0 52 .................................... AGAAAACGGTAATAGAGAGGAGAAAGAGACCGAGCCAGATAAAGAGGAAAGA 4015 36 100.0 37 .................................... CCATTGAACGTAATGCGGGATGGCCGCCTGTATGTTC 4088 36 100.0 38 .................................... TATAAGTTCTGTCAGTTCTTGTTGCATTTTGGTTAAAA 4162 36 100.0 36 .................................... ATATAGTTTCTCTGCAGTAATCCAGACAATAGTAAT 4234 36 100.0 41 .................................... GGTAAAGATGTAAGTTACATTTTATTAGCATATACTCAAAT 4311 36 100.0 42 .................................... GATTGGTACATACAACTACTCGACTCCTGTGGAGTTGAGTTC 4389 36 100.0 38 .................................... GGATTGTCCACTGTAGTAGATGTAATAACTGTAAAGCC 4463 36 100.0 38 .................................... ATTTATTAGATCAGCATTGGAAAGTTTAGCACTATCCA 4537 36 100.0 36 .................................... GTAAGTGGAAATTGAGTTGACAGAAGCAGTGACAGA 4609 36 100.0 37 .................................... GACATAAGTTACTAAAGAGTATTGTTTTATTTCTACC 4682 36 100.0 46 .................................... AAGGAAATCACAATACCTTGAATCATATCTTGTATATGATCGGGTA 4764 36 100.0 41 .................................... TTGTTCTAAAACATCAGCAGATAAAAATGCTTGAATTTGAA 4841 36 100.0 35 .................................... AGAGATATTCAAATACCTCAATGGCTACAGAAAAG 4912 36 100.0 40 .................................... ACGCCAGAGAAACATTGGGCAGTATTTGGAGAAAGTCATC 4988 36 100.0 49 .................................... TACTTATTTGTTCTTTTAGTATCGCTCTGTGATAATATGCTCTAGCACA 5073 36 100.0 36 .................................... TTTGGACCAAGTTCGCGTGTTATTTCTCCTAATTTA 5145 36 100.0 38 .................................... CTACTACCATTATCTCCACTTTCTTACTAAAGATTCTA 5219 36 100.0 41 .................................... AGTCACGGGACTGGGTTGGGAGTTAGTTAGTCATCGTGCTT 5296 36 100.0 42 .................................... ACAAAAGTTATAGTTTCAAAGGCTTGCTCGTTATTATTAAGG 5374 36 100.0 47 .................................... GTTTTGGGTCCGTCAAATATATTACTGTTTTTTGATCCTTCTTAGAA 5457 36 100.0 40 .................................... AAGACTAGGAGAACAACAATGGGAAGATTGATATCTAATT 5533 36 100.0 35 .................................... ACTGTTGTGGCCTTTCTAATGCCTTCATTTTTGTT 5604 36 100.0 40 .................................... TTATCAAATCTGTTTGGTTAGAACTCACTTGAGAGTCCAA 5680 36 100.0 37 .................................... CCAAAACCAACTCTGGAAAAGTGGAGTAAAGATGGCA 5753 36 100.0 41 .................................... ACAAATTGGCATTTGTCAAATCAACACCTAACAATTTTGCA 5830 36 100.0 31 .................................... GTATTTTTTTGGCATAACCGCTTAGTCGGAT 5897 36 100.0 43 .................................... ATTCAATCTGAGGAAAACTCTCTTAAAGACTATCTTGACTCTA 5976 36 100.0 43 .................................... ATCCTGGCGACGGTGAAAGTCTCAACCCCGGCAACACCAGCAG 6055 36 100.0 37 .................................... ACCAAAAACCCAGAACTTGTAATTGTTGAGTATCCTG 6128 36 100.0 41 .................................... TTTTTAATATAGTGGAGCCTTCTCTTTTCTTCCGTTACCAT 6205 36 100.0 39 .................................... ATATAAGCGTTACTCAAGTTGACATTGTTTAAATTTGAA 6280 36 100.0 34 .................................... TTGTTCCAATCTGATAGCGAGGCAAAGTTTTTCT 6350 36 100.0 34 .................................... TTGTTCCAATCTGATAGCGAGGCAAAGTTTTTCT 6420 36 100.0 34 .................................... TTGTTCCAATCTGATAGCGAGGCAAAGTTTTTCT 6490 36 100.0 34 .................................... TTGTTCCAATCTGATAGCGAGGCAAAGTTTTTCT 6560 36 100.0 34 .................................... TTGTTCCAATCTGATAGCGAGGCAAAGTTTTTCT 6630 36 100.0 38 .................................... TGGTTTTCCCCAAGATGTTGTCGCTTCTTTTTTGTCGA 6704 36 100.0 36 .................................... CAAGAAAAAGGTTGAGAGCCGGAAAGTATTGGTAGT 6776 36 100.0 39 .................................... TTTTAAATTACCTCAAGATATTCGAATAATTTTGTTACT 6851 36 100.0 34 .................................... GAAAGATAAGCGTCTTGAATCACTTGTGGCACCA 6921 36 100.0 38 .................................... CCCGCAGATCGGCACCGCGCAAGTCAGCAAAGCTTAAA 6995 36 100.0 39 .................................... ACGTTAAGTCGGCATTGCGCAGGTCGGCGCATATCAGAG 7070 36 100.0 40 .................................... GAAAACAACCTCTACATCCAAGTCGTACCCTTTGGAGTCA 7146 36 100.0 41 .................................... GTCCTGGCAACTCCACACCTTACTAAATGAATTCGAGCACT 7223 36 100.0 39 .................................... CCTCTCTACTGACGGTTTCTCCGTCATGGACCAGCCCCA 7298 36 100.0 41 .................................... CTTCCCAGGAGGGAATAACTGCTCAAGAAATTCGCGGGTGT 7375 36 100.0 58 .................................... CTTCAAGTGTCCTGTTGTCCAACTGAAGCAACCCTATGCCTTGACCACGTGAGTAGTC 7469 36 100.0 36 .................................... TTGGTAGCGAACGATGTAAGTTTTCATAGTTTATTT 7541 36 83.3 0 ....A.....A.T.................CA...T | ========== ====== ====== ====== ==================================== ========================================================== ================== 57 36 99.7 39 GTCCGCTTTCTTCTAGGAAGTGGAATTAATGGAAAC # Left flank : AATGTGCGATCGCGTGTAGCGAGTACTTCCTTAATGTGCTGGATATTCCCTTACCTCTCCGTTCTCAAGGGAAATTTGTGAACATGGTTAGGAGCGATCGCGTGTAGCGAGTACTTTACAAACAAACGTAGGGAGTGATTCACAAACAGACCAAAAATCGTGCCTGTTTTTTTTATCACCTTTATAATTTATTATTGGAAAAATGGAGAGAGTGTAGTTATAACAAGATATTTGGGATAAAATATTGAAAATTCTTATAATTAATGTAATAATAAGAAGAGAAATAAATATGACAATAATATCAGTGAATAGCGAAAAAATTCCGAAGGTCAAGGAAAATGGCTGGAAGGCTAGTAAAATCGTCGGGAACCTCGGTCCCTTGTCCCATAAGGATTTGAGGTATATTTTAAGAGTGTATAAGAGGCTGGAATGGGATTTTTTTTCTGACCTTCGGAAAGTGGGTCTAGACAGTAAACAGGGTAAGGGTTTAAAATGAAAGG # Right flank : TCCTTGATCAAGGTTTTTAAAAACCTGGAAAAATTAAGGATGATAAACATGCGATCTCCCATAGCGAGTGCTTTGGAACCGCGCTGGATTAACTGCCATGCGATCGCAACCGATGTCCCAAAACCACAAGTACAAAACTGACTTTTTTTCTGGAGGTTTTAAGTAAATACATCCATAATAAGGTTTAAGCTCTTTGAATCCCCTCAACCCCTTTTTAAAAGGGGAGGTAAATGCTTTGTGTTTAGTTTATGAGGAGTTAAAGCTGCTTATATTATAATGGATGAGGTAAGTGCAAAACTGACTTTTTTTCTGGAGGTTTTAAGTAAATACATCCATAATAAGGTTTAAGCTCTTTGAATCCCCTCAACCCCTTTTTAAAAGGGGAGGTAAATGCTTTGTGTTTAGTTTATGAGGAGTTAAAGCTGCTTATATTATAATGGATGAGGTAAGTGCTAGGGAAATTATGAAGAGGGTAAAGGGCGATCGCGCTGGGAGTACTT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCTTTCTTCTAGGAAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.70,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 38571-41289 **** Predicted by CRISPRDetect 2.4 *** >NZ_MBQY01000046.1 Cylindrospermopsis raciborskii MVCC14 CYLMVCC14_contig50, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================================== ================== 38571 36 100.0 36 .................................... ACTTTAAAAGTCAATACAGCAGTATTAACGTTATTA 38643 36 100.0 39 .................................... TTAATCGGACTAAGTCTGGAGTGCATAAATATATATACT 38718 36 100.0 37 .................................... TAAAGTCACTGGACTCCAATATTATTCTGATGTCAAC 38791 36 100.0 43 .................................... TTCTCTGTCCTCTTTTTAGAACGCAGTCTTCCTGACTCCGACC 38870 36 100.0 34 .................................... TTTCGCGCCATCCTTTGGCGCTTTTGGCGCTTCA 38940 36 100.0 34 .................................... AGAACATATACTAGCTGTGCTAGATGTGTTTCAG 39010 36 100.0 44 .................................... GTTAAGCACGACATAGCCGTTTTTGGCTATTTCGCTTTTAATTG 39090 36 100.0 39 .................................... ATTAAATCTGTATTTGTAAAATTGCGATCTCTTAAATCA 39165 36 100.0 37 .................................... ATTAAATAATCAAACAATAACAGGGTTAGCAAACCCA 39238 36 100.0 36 .................................... ATATTTGCTCACAAGTTGAGCCATTACTTGTAACTC 39310 36 100.0 39 .................................... GCCATCCATGGGTCAGCCGGGTAACTTGACATTTCTGTC 39385 36 100.0 36 .................................... ACGATCACGCCTCTAGATGTATCAGATAAGTTGACA 39457 36 100.0 37 .................................... ATTAAGTTTGTTATTAAACGCTATACCGTTCACAGGG 39530 36 100.0 41 .................................... TCATGTAGGCCGTAGCCACCACGGGCTACCAAACCTTTCGC 39607 36 100.0 38 .................................... CATTAGCTGATCCTGTCGTTTGGTCTTTTACTAATACA 39681 36 100.0 36 .................................... CAACGAGCACCATGTGGCTGTAGTAGGTTTTAGCTT 39753 36 100.0 35 .................................... TCGCCAGGGGCAGATTGTGCTGAATACTTAAAGGT 39824 36 100.0 34 .................................... GAAATTTTAGGGAGGGTTTGAACATGTATAGCTT 39894 36 100.0 34 .................................... TTTTTACACTTAATTTTTGGAAAATATTTTACAC 39964 36 100.0 43 .................................... GGCATTAATCCATTAAAAAGTGTGGCATTAATTTTATTATTTT 40043 36 100.0 37 .................................... CTACGACTGCTTTTACATGTTTAGGGTCCCATGCATA 40116 36 100.0 50 .................................... GAAACTTGTTGGTTTGTCATTAGAAACCTTCTTAAAGGTATCTTTATAAC 40202 36 100.0 35 .................................... GGCTCAGCAACAACAGCTTCAGCGACAGCTTTAAC 40273 36 100.0 39 .................................... TTTAAGCTTGTGATAGGGAAAGTATGTATTTGTATAGTC 40348 36 100.0 38 .................................... ATATTTTTTATTTCTAAGCTTAAATTGTTGAAACTATT 40422 36 100.0 39 .................................... TGCTTAGGTCAGCATAGCTAAGATCAGCACAGCGCAAAC 40497 36 100.0 39 .................................... TCTAAATTTGCATCCTGTACATATGCAGCAGTCAAGTTT 40572 36 100.0 34 .................................... TATTGTACTTTGCTTAGTCGAACAGCGCTTAGTC 40642 36 100.0 37 .................................... AAATCAGCGCCGCGCAAGTCGGCACGTGTTAGATCAG 40715 36 100.0 43 .................................... GGCCTAGAATACCATGGTAGGTATTCTATTTCCATATTTAACC 40794 36 100.0 38 .................................... TACAATTATGTACTTATCATCTGACCATGACCATTCAG 40868 36 100.0 53 .................................... GCGTTTGGCATCCAGCATTTGCTGTCCACAGGTTGACAGAACCTCATCGTCAG 40957 36 100.0 42 .................................... TACTCATTACGGTTATCTTCTGGGTCACACGTAAAGACCGTG 41035 36 100.0 39 .................................... AAATTTTTCCAGTCATCTTTGCTCTTTCCAACAGTTGAA 41110 36 100.0 37 .................................... TAATAACACTCTCGATAAGGGTATCTACATTCATATC 41183 36 100.0 35 .................................... ACCTAACATAAGAGTCACAAGTATTACATTTTTCC 41254 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================================== ================== 37 36 100.0 39 GTCCGCTTTCATCTAGGAAGTGGAATTAATGGAAAC # Left flank : GTTGGGGGGGATCCGATGCTATTAAACAACTCACATTTCCACTTACCCTATAAAAACCAACAGTCTCATAGAATAAACACTCTTCTCTCCAGGGGAATTTTGGAGGGTGGTAAAAGGGCGATCTCACATAGTGAGTGCTTCGCAAACGCACCAAAAATCAAGACTGTGTTTTTTATCACCTTTCTAATTTATTATTAGAAACATGGAGAGAGTATAGTTATAACAACACATTTGGGATAGATTATTGAAAAATTTTGTAGTTAATGTAATAATAGAAAGAGAAATAAATATGACAATAAAAGCAGTGAATCACGAAAAAAAACCGAAGGTCAAAGAAAAAGGCTGGAACGCTAGTAAAATCGTCGGGAACCTCGGTCCCTTGTCCCATAAGGATTTGAGGTATGTTTTAAGAGTGTATAAGAAGCTGAAATGGGATTTTTTTTCTGACCTTCGGAAAGAGGGTCTAGACAGTAGACAGAGTAAGGGTTTAAAATGGAGGG # Right flank : CTCAAAAGCTATCCATTTTGATGATCACTTAATGTTGGTCGTTGCAGGGCTATGGAACTTCTATTTGGATGCAGCATAAATTCAATCAGGATGGGGGAACTTCTATCGTCCAAAAAATATGCTTTTATTTCCCAACAGCTCTAGTATATGTTCTTGCCCACAAAATCCAAATCTTCACTAAAGAGTTTTCGACATTTTTCACATTTAAACGGAATTCGGTCGAGTGCCATGCTCTGAGCATCAGCGCCCCCTTGAGAATGAACCTGTCAGCATGAGGAGATTGCGACATTCGGTACAGGAAGCGTTCCATCGCATAGTACTGAAGTAGCTCGCTAAATGGCCGCTGTTCATCTTTCGCCCTGTTTAGAAGACGTTGACGGACAGAAGCAGAGATATTTTTGAGGTTTTTCGCACTCATACCAGTACCTCTAGGTAGGGTTTCATCGCTGCCTCAACCCGGCAGATTCTGGCATATTCAATAAGCTGCCGGGGGTTGAATT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCTTTCATCTAGGAAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.30,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 6355-2799 **** Predicted by CRISPRDetect 2.4 *** >NZ_MBQY01000059.1 Cylindrospermopsis raciborskii MVCC14 CYLMVCC14_contig62, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================================================================================================================================================================================================================= ================== 6354 36 100.0 37 .................................... AAATAGTATTTTCATACTTTGCCCCAAAAAAGTTGTT 6281 36 100.0 38 .................................... CAGACAGTGCAAGGTACAAATAAGGGACATCCTCCCTG 6207 36 100.0 37 .................................... CATAACTATGACTACATCCCTTTCTAATACTTTTACT 6134 36 100.0 36 .................................... GATAAAAACGGGCTATAATGCCCGGGGGATCTATTA 6062 36 100.0 42 .................................... TTTAGAGTGGCGAGAGACCCTTTCCACTGGTGCTGGGGTAAA 5984 36 100.0 39 .................................... ACTTTTTACTGGGGAAAAAAGTACAGTAATTGAGTCCTA 5909 36 100.0 40 .................................... CGGAAAGCCTCCATACGGTCATCATATAGAGAACATTTTG 5833 36 100.0 36 .................................... TACTCTATTCGTCCGTTTTACTTCTTTCTTTTTAAA 5761 36 100.0 39 .................................... ATGACATCCGTCCGTGGCGTGCATACCACTGTCGAAGCA 5686 36 100.0 37 .................................... TTGATACCATCCTCCTTGCCACCATTTTGGCAAAGTT 5613 36 100.0 34 .................................... GCGCTATTAACATCCCTGTTAAAAGCCTATCCAG 5543 36 100.0 36 .................................... CACTTTTTTGGGCAGATACTTGGTTGGTCATTTTCT 5471 36 100.0 38 .................................... GGCCAAAGCCTCAGCGTCGGGGTGGTTATAGAAGTGAA 5397 36 100.0 37 .................................... ACAGTACTTGAGTCCTACAATCCAGTAGACTCTTTTA 5324 36 100.0 41 .................................... TGAACAGCCTCATGGGCTAAGCTGTCCACGTCTTGTTCCCG 5247 36 100.0 37 .................................... TTTATGGAATTTTTTTTCATTTGTTTATTCCATATTT 5174 36 100.0 38 .................................... GTGGTGGTGGTGGTCATGGTCATGGTTTTAGCGGCTTA 5100 36 100.0 38 .................................... AGGGCCAGCTCATGGTATTCGTTGGCGGTCATATGACC 5026 36 100.0 37 .................................... GCAAGTAGTTGGTTCAAAAGTTCGGTTTTGTTCACTG 4953 36 100.0 36 .................................... CAGTCCTTACGGACGTAGAAGGTAGATTTTTGTAAT 4881 36 100.0 38 .................................... TGTACTTTTTTCCATAAAAAAATACAAAAAAAAATGTA 4807 36 100.0 37 .................................... ACTATTAAAACAGTTTCTGATAATGGAATACTTGGAA 4734 36 100.0 36 .................................... CCAATAAGAGTACTATATTTAAGGCTACCATTAGCC 4662 36 100.0 44 .................................... CTGCAATACTCCTTTGTCCCTTCTATCCCTAACCTATCTGGCCA 4582 36 100.0 33 .................................... CACTAACGGATCTCATGCAATGATTTGTATGGT 4513 36 100.0 36 .................................... TAAAATCATCCTTTCATAAGTATTAGAACAGTCTTG 4441 36 100.0 37 .................................... CAAAAAAGAATACATCTCTGGCCAGAAGTATTCTTTG 4368 36 100.0 47 .................................... TTGAAAATGTGGGTAGAGGGAAAGAATCATGGAAGACGTTCAGAGAG 4285 36 100.0 35 .................................... AGCTTATGCTTAATATTGAAAACTCTGAAGTAGCT 4214 36 100.0 36 .................................... TTTGAAGCCAATGGACACTTTCGTGCGCAAGGCTTT 4142 36 100.0 36 .................................... AATTTTAGACTACAATCGCTTAGTCGAATGTATGTA 4070 36 100.0 38 .................................... GCGCTTAGTCGGACAAGGCTTGGATTGAGTGCATATAT 3996 36 100.0 38 .................................... CAGGGTAAAAGTAGTTCCCTGCCTCCTTTTCATTAATA 3922 36 100.0 38 .................................... CCAAAATGGAATTTATGCCTATTAGCAAAGTATGGCTC 3848 36 100.0 37 .................................... ATGCCCTCACTGTACTTCTATTGACATCCGCCTCGCT 3775 36 100.0 45 .................................... GTGCGAGGGGCACCCGAAAAATAATTGCTTGAAAAAAAATATCTA 3694 36 100.0 42 .................................... GTTGTATTTAGCTGTTTGGGACTTGTCATACTTATAGAGTTC 3616 36 100.0 37 .................................... AACACAACATTACATTGTGATATCCTCCTTGAGGTAG 3543 36 100.0 35 .................................... AGTCCGACTAAGCAGTTATGATACAAAAATGCCCA 3472 36 100.0 41 .................................... TATTATAATGGTCAATCAGGATCACCTAAAGTAAACAACAG 3395 36 100.0 39 .................................... GATATCCCCTATTTTTTAGGACATCTCTGGTTTTAACCA 3320 36 100.0 35 .................................... TGCCTGACAGAGGCAATGCGTGGGCCGTTCCTGTT 3249 36 100.0 39 .................................... GATGAAACATACTAGATCAACGCGTTCGGGGCGGGTGGG 3174 36 100.0 36 .................................... ATTTTATTAAATAACAACTCCAACTGTTTGTTGGAT 3102 36 83.3 231 .............................AA.TTTG CATAGATTATGAAGGAGTTTAAATGGTTTATATTGATGACGATGATAATATTGATGCCGATTTGGAGGAAGGAGACTTAGACTATTTTTGGCTAAACTCCCTCAGCGACAGTTATCAAAGATACCAAGAAGAACTAGAAGATGCTGAAATGGAAATAGCTTATGAGGAAGAGGAGCTTGGATGATGAATGGGAAAAAATGGCTAATTAAGTGCGGAATTAAGTATTGACAA 2835 36 80.6 0 .....G....................T..ATT.G.A | C [2805] ========== ====== ====== ====== ==================================== ======================================================================================================================================================================================================================================= ================== 46 36 99.2 42 GTTCCCACTCGCTGGGGACATTAATTGAATGGAAAC # Left flank : TAGAGGTGTTAGTATGGAGGCAGAAAAGCTGCGATAAACCTTGATACATCACGTAGTAATCAGCAAAAAGAAATAGTGAAGACTAGTCTATGAGAGAATGGCGGGTGCGAGTGTAGTGCGATATCACATAGTGAGTGCCTCGCAAACACACTAAAAATGGGGACTGTGTTTTTTATTACTTTTATAAAGTATTGTTAGAAAAATGGAGGGAGTATAGTTATAACAAGATATTTGGGATAAAATATTGAAAAATATTGTAGTGAATGTAATAATAGAAATAGAAATAAATATGACAATAAAACCAGTGAATCACGAAAAAAAACCGAAGGTCAAGGAAAATGGCTGGAAGGCTAGTAAAGTCGTCGGGAACCTCGGTGCCTTGTCCCATAAGGATTTGAGGCATGTTTTAAGAGTGTATAAGAGGCTGGAATGGGATTTTTTTTCTGACCTTCGGAAAGTGGGTCTAGACAGTAGACAGGGTAAGGGGTTAAAATGGAGGG # Right flank : TTCTTCACAGTCATCGCTGTCGTCTTCAGGATAGTAGCTGTAAAACTTCCTCATAAAACTACAGTACAAACTTTTTACCTCATCTGCATTACCGCTTATTTTGTCTGGCAGCCAGTCGCTGTTGTAAGCATTAACAAACTTGATCAAGTTATCTACAGTTGGGTGGAACTGTGGTAAGTCCTTGATTATAGATTCTATTATTTCCAGTTTGTTAAGTTGGTCACAGTTAATTTCTAACTCATTAAAGAAATACTTTAGAGACTCTTTGTTGTTAAACAATTCTTTGTGATACTCAACGTCAAAGTTCTCAACCCTTATAATTTCTCCAAGGTTTTCATTTAGCTTACCGCTGTTAACTATCAAACTTACAGGTGGAGTTGGAAAATACCCGAGGCTCTGTTCTCTTACAAAGTTGTTAATGTTATTAACAATGTAAGAATAACAAGGGTGGTAACTTCCACTAGGAAAAGAACGGTTCTCATCGATGACGTAACCCATAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCCACTCGCTGGGGACATTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 3052-4046 **** Predicted by CRISPRDetect 2.4 *** >NZ_MBQY01000010.1 Cylindrospermopsis raciborskii MVCC14 CYLMVCC14_contig18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 3052 36 100.0 39 .................................... CCATGTACCTCTCTAGAGAGTCTACCCTCCAGGCATGCC 3127 36 100.0 36 .................................... CTTATACACAGGGTGGGTCCTTCCCCCGTAACTAAT 3199 36 100.0 43 .................................... AAGTTATGTCTTTTAAGCTCATTAGCTGTTTTGTTGATTTGTT 3278 36 100.0 41 .................................... CTCTTCGACAGACTGAAAGGTAAAGAGGGGTATGGAAAAAA 3355 36 100.0 40 .................................... GAATAATTACTCCATTTATGGAGTCGCCGGGGTCGGCAAC 3431 36 100.0 42 .................................... CAGACTTTATGCTGAGAGAATGGTAAGACATGCTGTAGAAGG 3509 36 100.0 38 .................................... GTGATCCAATTTTTATTTGATTTAAATCTGAAACAGAA 3583 36 100.0 40 .................................... CTATGGCACAGACAGAATCCACACTCCTTTCAAAGAGGAC 3659 36 100.0 34 .................................... TTTAATAGTTAAATAGGTTTAGTACGAGGAACTA 3729 36 100.0 42 .................................... TCACGTAGTCGTTCTCGCTTACTACAGCGCTGAGCTGTATAA 3807 36 100.0 44 .................................... GCTGCCTTCTTTATTAGCTAGTTGAGCGAAGTAGACTTGAGTAA 3887 36 100.0 40 .................................... ACTATTGTTTTTTGGTGTTTTAGATTTCCATTAGAGCTGG 3963 36 100.0 13 .................................... CAATCATTAACAT Deletion [4012] 4012 35 75.0 0 C..-...........AA..CCC........C....T | ========== ====== ====== ====== ==================================== ============================================ ================== 14 36 98.2 38 GTTCCCACTCGCTGGGGACATTAATTGAATGGAAAC # Left flank : ATGATTCGTAAACGCGCTGGATATTCCCTTACCTCTCCGTTCTCAAGGGAAGTTTATCAAGGTCATTAGGTGCGATCGCGCGTAGCGAGTGCTTTACAAACGCACGTAGGGAGCGATTCGTAAACGCGCTGGGAGTGATTCACAAACAGACCAAAAATCGTGACTGTGTTTTTTATCACCTTTATAATTTATTATTGGAAAAATGGAGAGAGTGTAGTTATAACAAGATATTTGGGATAAAATATTGAAAATTCTTATAATTAATGTAATAATAGGAAGAGAAATAAATATGACAATAATATCAGTGAATAACGAAAAAATTCCGAAGGTCAAGGAAAATGGCTGGAAGGCTAGTAAAATCGTCGGGAACCTCGGTCCCTTGTCCCATAAGGATTTGAGGTATGTTTTAAGAGTGTATAAGAGGCTGGAATGGGATTTTTTTTCTGACCTTCGGAAAGTGGTTCTAGACAGTAGACAGGGTAAGGGTTTAAAATGGAGGG # Right flank : TAGGAGAAAAAAAATGACGCAACTAATAGGTATCTCGGGACCACTCTTGACATTGAAGCAGAGGGAAAACATCGGTCCCTACGAAGTTATCATTGACTTCGAAGCAACGAACGACCCAGACACACTGGAGAAATTGAAGGAGTTGGGGATGAGTGGAGGTCGGGGCAGGTACGACATGAGTGACGGTATACTAGAGATAACAATCCCGACAACAAAATACGGTGATATGTTTTTTTATGCCGTCCTCGATGAGGACCGCCGTATTGGTTTTGTATCCTATGGGGTAACTATAGATATGGATACCGGCGGCTCGAAGGTAGATGGTCACCTCACTATTAGCACATCCGATCTCTGTCATGAGGGTGGCTATGGCGATCCCCAAACCATTACCTTTTCTTCTGTAGAGATGGATTTCAAGATCTATAATTGAAACCAGCCAGCAGAATCACGAGGTTAGCTTGTAGTGGACTGTTTCAGCTAAAATGAGGCAATGTTCCCAC # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.12, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCCACTCGCTGGGGACATTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 3015-286 **** Predicted by CRISPRDetect 2.4 *** >NZ_MBQY01000094.1 Cylindrospermopsis raciborskii MVCC14 CYLMVCC14_contig94, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================== ================== 3014 36 100.0 38 .................................... GATGTACAAAAAAAGTATCAACCAGTCGAGGTTGAGAA 2940 36 100.0 33 .................................... TCATTTACAATGATGTACCACATCTCATTGTAA 2871 36 100.0 40 .................................... TGTCTTATATCTGCGTCTGTGACGCAGAACAGTTTCGGGC 2795 36 100.0 38 .................................... TTGAAAGAAACTTTAGGGAATATCTCTACTGGCTGGAA 2721 36 100.0 41 .................................... TTTGCGTGGAGGAAAATAGGGATCACATTCCGTTATCAGGG 2644 36 100.0 37 .................................... TTGAAAACAAACTTTTACAAGACTGTGTAAGTAGTTT 2571 36 100.0 38 .................................... ATGGAAGCTGAGTCAAAAATAGCGACTTCTCCAACTGT 2497 36 100.0 37 .................................... TTCTAAAACCCCTTGACATATTATGGAAAGTAGTTTA 2424 36 100.0 34 .................................... TGACGTAAGCGCGTACCAGGGATGTTTTTTCGAA 2354 36 100.0 42 .................................... ATTTAAAAGGTGCCAGTTTAATTGGTGCCAATTTAATTGATG 2276 36 100.0 42 .................................... AACTTTGTTTGTCTTATCGGACAAACAAAGTACCCTTAAATA 2198 36 100.0 35 .................................... CTATCTGTCCAATGGGTTACTATTTTTCTACATAC 2127 36 100.0 50 .................................... GTCCTTGCCTGCGGTTAGCAGCTTGGCGATGTTAGCCGCAAGGTTCTCTC 2041 36 100.0 36 .................................... TTAATGTTAACTTGATTGATGCTAATTTAGATTTTA 1969 36 100.0 44 .................................... TAGAAATAGTGTGTGTATTGCAGTAAAACTCACGGGAATAGAAA 1889 36 100.0 35 .................................... TATTGAATGGAACGGGACACAGTTTACGTATATCA 1818 36 100.0 39 .................................... CTTTACTAAGGTATCAACCGACTAAAGATTTAATCGAAA 1743 36 100.0 33 .................................... TACTAAAATGATCGACTTTAACCTAGACTTTAA 1674 36 100.0 41 .................................... CTGGTATGCACCCATGCCCGAGGCTCGGGCTCGACTTGGGT 1597 36 100.0 40 .................................... GTCAGGCTCCTGTAGGCCCACAGCTAGAGTACTCATTTAG 1521 36 100.0 36 .................................... GCAATAGACGATAGCGATAGTGTTATGAAATTTTCC 1449 36 100.0 34 .................................... AGAAAAATAATAGTTGTAAAATTAGTTGGTTGCG 1379 36 100.0 34 .................................... TTTGCAGACTTAAGAGGTGCAGATCTCAAATCAG 1309 36 100.0 44 .................................... ACCCCAGGAGGGGATTTTATGGATTATATTTTCTACCTGACCAA 1229 36 100.0 38 .................................... ATGAAAGCAGTTTTAAACAGAGATTTAGAAAGTCTCCC 1155 36 100.0 45 .................................... TATAAAGAGATATTTATTTTTCAGGTTAATCCTATCTTATATAAG 1074 36 100.0 40 .................................... TGCCGATTTATCAAATGCTAACCTACAATATGCCAAGTTA 998 36 100.0 39 .................................... AAAGTTAAAAAAGTTGCCTCTGAAGCTAAGATATTAGCA 923 36 100.0 45 .................................... TGCACCGAATACTCTAAGGGTGACTATCACCCAACTAGATGACGA 842 36 100.0 47 .................................... TAGAAAGATCGGCTCAAGTATTTCTTATACCAATTACAGTAATAAGA 759 36 100.0 35 .................................... CTGCTAAGGTAGAGGCTAAGGTAGAGGCTGCTGAA 688 36 100.0 39 .................................... CGTTAGAAGTGTGCGATCGCACTTTTAGTGACGTGTATC 613 36 100.0 39 .................................... ATGCCGTTATCTAAAGATGCTTGACCCTTAAAATACCAA 538 36 100.0 38 .................................... CTGAAGCAGGGCAAGGGACCCAGAAAATCAAACAAAAG 464 36 100.0 37 .................................... CAAAAATGAACGATATTCTAGATCTAAGAGAGCACAA 391 36 100.0 34 .................................... ACTAAGGAAAACCACGTGATATTGTTTAAGCGGA 321 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================================== ================== 37 36 100.0 39 GTTTCCATTCAATTAATGTCCCCAGCGAGTGGGAAC # Left flank : GTTACAAAAAAACCCCACCCAAGGGGGTGGGGAAAGGGTTAATCTTTTTTAGACTTACCCTTAGCTAATGCCTCCCGGAATGCTCGCATATGGTCATCATATGCGTTCATTTTTGCTATTTCTTTAGCGGCGGCTGCCTTACCGCTCGCTATTTGATCAGCAAATTCTTTGTCTAGTTGTTTGTCCATCTCTTGGTTTGCTCTTTCGATCTCATCAGCTTGGACGCGGAGGATTTCCAAGTATTTTGCTTTTTCTTTGTACTCATCTCCTTCAAGAGCTTCTTCTAGAAGGTTTCCATTAATTCCACTTCCTAGAAGAAAACGGACCGTTTGCTGAGTTGATAATGTCTCGGTTGGTGGGGTGGGAAGTGTTGGTTCCTGTTTCCCTTCTACCGTTTCCGGTGTTGTTATCTCGGTTGCTCTGGTAGTAAGCCCGAGTTTTATCATTCTCCTGTTGAACTCTGCATTAAAATTTATCATGTTAATCCACCGCATAAATTT # Right flank : CCCCTCCATTTTAATCCCTTACCCTGTCTACTGTCTAGACCCACTTTCCGAAGGTCAGAAAAAAAATCCCATTCCAGCCTCTTATACACTCTTAAAACATACCTCAAATCCTTATGGGACAAGGGACCGAGGTTCCCGACGATTTTACTAGCCTTCCAGCCATTTTCCTTGACCTTCGGAATTCTTTCGTTATTCACTGATTTTATTGTCATATTTATTTCTCTTCCTATTATTACATTAATTATAAGAATTTTCAATATTTTATCCCAAATATCTTGTTATAACT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTCAATTAATGTCCCCAGCGAGTGGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA //