Array 1 2974693-2974323 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB851182.1 [Clostridium] bolteae 90A9 acBQZ-supercont-complete, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 2974692 33 100.0 35 ................................. CCTGCCATGTCCGATGGGACGGCCTTGCACCAGCG 2974624 33 97.0 34 .............G................... TTATTTTAGACAGGCCGTAGGTAACTGTGAAATG 2974557 33 100.0 35 ................................. CCATGGTCGTGTATTTGACCAGTGAGTGCAGACAA 2974489 33 100.0 34 ................................. TTTGATGGCACCAAGTACTACCCCTCTGGTTGCA 2974422 33 100.0 34 ................................. AATGAAATGATGTCGCTTGTATCAACATCATATA 2974355 33 81.8 0 ......................CA..CCA...G | ========== ====== ====== ====== ================================= =================================== ================== 6 33 96.5 35 GTCGAGGCTCGCGAGAGCCTTGTGGATTGAAAT # Left flank : GCTCGCGAGAGCCTTGTGGATTGAAATACTAAAGGAAGCAGTCACTCCTCCCTTTCCTAACGTCGAGGCTCGCGAGAGCCTTGTGGATTGAAATACAAAGGCAGCTGAGAAATTTCTGAAAGATAACCCGTCGAGGCTCGCGAGAGCCTTGTGGATTGAAATGTCTCCGCTAAGTCAATCACTTTACGAGTATAAGTCGAGGCTCGCGAGAGCCTTGTGGATTGAAATAAATATCTAACAGGAGATACAGGAAAATATCTCGTCGAGGCTCGCGAGAGCCTTGTGGATTGAAATAACTCCTCGCCACGGAGGACACCGGAACCCAGCGCGTCGAGGCTCGCGAGAGCCTTGTGGATTGAAATTTCCAGTGTAGGAAAAAGTACTATTGCATTTACGTCGAGGCTCGCGAGAGCCTTGTGGATTGAAATNNNNNNNNNNAGGCTCGCGAGAGCCTTGTGGATTGAAATTTCCAGTGTAGGAAAAAGTACTATTGCATTTAC # Right flank : ATACCTGTAAGCCCCTAAATTGATGCAAAAGGAAAATTGCTCCCCACGTACCTAATGCATTGAAAGCAGCCATAATTATATATTGAAAATTCGCTAAAGTACAGTTTACAAGGGACTACACAGGGTAGGTATCTGACGGGAGGGGTGCCGCCAGTCAGATTTTCCATGTGATGTTCAAGCTGTCGCTTGTGGCGGCTATGGTGGTGATCATCAAATCCACCACACGCCGCTTGTCATCAAAAGATACATTCTCCCAGGTATCGAGGTAGCCGGAAATCTGGCTGACCTGTTCCGGGCTGATGGCCTCCACAGTCAACTCCGCTATCCTTGCCAGAAGTTCCTGCTTGCGCCCGTCCAGTTCCGCTATCTTCACATTCACATAGGAGAACAGGACATTGTTTGCCCCCGTCAGACTGTCCACCAGCTTTTCAATCTCGCTGTCTACATGGGCAAGTTCCACTTGCAGGGCGGTGATTTTCGGGTTTGCCTTTGCCGCTTTC # Questionable array : NO Score: 9.08 # Score Detail : 1:0, 2:3, 3:3, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGCTCGCGAGAGCCTTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGAGGCTCGCGAGAGCCTTGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.00,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 5045636-5046004 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB851182.1 [Clostridium] bolteae 90A9 acBQZ-supercont-complete, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 5045636 33 100.0 33 ................................. GCGTCAATCAACGCATTAACTTGAATGCACCGC 5045702 33 100.0 34 ................................. TAAATTTGTGATACGGTTATCCAGGTTGCTTATG 5045769 33 100.0 36 ................................. ACTTCCGATAACCCCAACTATAAGGAGATGAAAAAC 5045838 33 100.0 34 ................................. TATAGAATTGCAAGAGGCCGGTACCTTAAAGGTA 5045905 33 97.0 34 .............C................... ATTTGGTCGACATCTGCCTGCACTACGCCTGGTG 5045972 33 97.0 0 .............C................... | ========== ====== ====== ====== ================================= ==================================== ================== 6 33 99.0 34 GTCTCCGTCCTCGTGGGCGGAGTGGGTTGAAAT # Left flank : ATGCTGATACTGATTACATATGATGTGAATACGGAAACCGCTGCAGGCAGGACCAGGCTGAGAAAGGTTGCAAAGCAATGCGTTAATTACGGCACCCGCGTCCAGAATTCTGTATTTGAATGTATTTTGGATAATACCCAGCTGATAAAGCTAAAAGCCATACTGACAGATATCATTGATGAGCAGACGGACAGCCTTAGATTTTACAACCTGGGAAATAAACACACTACAAAGGTTGAACATGTTGGGGTGAGTAAAGGGATTAAAGTGGAAGAGCCGCTGATATTCTGACCAGGCTGCGGGTGGTAAGGAGGTTTCAAATAGTTTGGTGCGAACCAGAAGCAAACATGAATTTACGGGGGGATTCGCACCGGAAAAACTGCACAATGAGAACGGTTTTGGATGTGTGCAGGGTAGGTTGGCGGTGATTTGAGAGGGTATGATGTGATTTGATTGTGGAAATGTGATGAAGAATTGTTGGTTTTTTGTGTAGTATTGCT # Right flank : TCGGAATTAACCCCGCAGCACCATTACTGCTGATAGTCTCCGTCCTCGCGGGCGGAGTGGGTTNNNNNNNNNNCGTCCTCGCGGGCGGAGTGGGTTGAAATCGGAATTAACCCCGCAGCACCATTACTGCTGATAGTCTCCGTCCTCGCGGGCGGAGTGGGTTGAAATGTCCATATCACGGTAGCCGACAATCTGGCGCCGCGTCTCCGTCCTCGCGGGCGGAGTGGGTTGAAATGACTCCCGACAGTGCAAGGCGCAAAACTCCGCGATGTCTCCGTCCTCGCGGGCGGAGTGGGTTGAAATCCTACGCCTTGGGCGCCGGACAGTATCAGCATACAGTCTCCGTCCTCGTGGGCGGAGTGGGTTGAAATAAAGGGCTGTTCCTGAATGCGGATTCCAAACCTAGTCTCCGTCCTCGCGGGCGGAGTGGGTTGAAATTGTTTCAATGCAACCGCCAGACTGCTTGGAGTACGTCTCCGTCCTCGCGGGCGGAGNNNNNN # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCGTCCTCGTGGGCGGAGTGGGTTGAAAT # Alternate repeat : GTCTCCGTCCTCGCGGGCGGAGTGGGTTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTCCGTCCTCGCGGGCGGAGTGGGTTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.60,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 5046139-5046711 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB851182.1 [Clostridium] bolteae 90A9 acBQZ-supercont-complete, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================================================ ================== 5046139 33 100.0 34 ................................. GTCCATATCACGGTAGCCGACAATCTGGCGCCGC 5046206 33 100.0 35 ................................. GACTCCCGACAGTGCAAGGCGCAAAACTCCGCGAT 5046274 33 100.0 35 ................................. CCTACGCCTTGGGCGCCGGACAGTATCAGCATACA 5046342 33 97.0 34 .............T................... AAAGGGCTGTTCCTGAATGCGGATTCCAAACCTA 5046409 33 100.0 60 ................................. TGTTTCAATGCAACCGCCAGACTGCTTGGAGTACGTCTCCGTCCTCGCGGGCGGAGNNNN 5046502 33 81.8 34 NNNNNN........................... TGTTTCAATGCAACCGCCAGACTGCTTGGAGTAC 5046569 33 100.0 35 ................................. TCCTCTTGATTTTTGATGGCTGACCTGTGACCATA 5046637 33 84.8 9 .........................C..TTCC. TTCTGGTCA Deletion [5046679] 5046679 32 75.8 0 .......C....A.-A...A...AA.C...... | G [5046709] ========== ====== ====== ====== ================================= ============================================================ ================== 9 33 93.3 35 GTCTCCGTCCTCGCGGGCGGAGTGGGTTGAAAT # Left flank : TCCGTCCTCGTGGGCGGAGTGGGTTGAAATGCGTCAATCAACGCATTAACTTGAATGCACCGCGTCTCCGTCCTCGTGGGCGGAGTGGGTTGAAATTAAATTTGTGATACGGTTATCCAGGTTGCTTATGGTCTCCGTCCTCGTGGGCGGAGTGGGTTGAAATACTTCCGATAACCCCAACTATAAGGAGATGAAAAACGTCTCCGTCCTCGTGGGCGGAGTGGGTTGAAATTATAGAATTGCAAGAGGCCGGTACCTTAAAGGTAGTCTCCGTCCTCGCGGGCGGAGTGGGTTGAAATATTTGGTCGACATCTGCCTGCACTACGCCTGGTGGTCTCCGTCCTCGCGGGCGGAGTGGGTTGAAATCGGAATTAACCCCGCAGCACCATTACTGCTGATAGTCTCCGTCCTCGCGGGCGGAGTGGGTTNNNNNNNNNNCGTCCTCGCGGGCGGAGTGGGTTGAAATCGGAATTAACCCCGCAGCACCATTACTGCTGATA # Right flank : TCCATCAAATTCAGGATTACGTTTAGTCAAAACATCATTCCCCTTTTTCTAAGAAAACAGTATAGTTTGAACCAGAAACATTAGCTATAACTAACAACACGCAGCAAAAAAGGTGGGCGAACACCCACCTTTGCCATAAAACTGTTATAGGGTATAAAGAACGCGGGCCTCCCTCACCCTTTCCATGCCCGGATCTCCCTAAGCCCCGGCACCAGCACTTTGGCGCTGGTTTCCAGAATGATCCTTCCTTTTTCAGCCGTGGCGCCTGACGGGTCTCCGCCGATTCCTATGGGTTTGCCGTCTGCTGTTTTCCAGTCCTCGGATACCCAGCCAATGGATACGTTTCCATAAGGCCTCAGTGCCTGATTGTCCTTAAATGCAGTCGGAATTCCTGCCTCTGAGGTATCTAACTTTACCAGAGAAGGGTCCACGGCCATGACCATGGAGGTTTCCATCTCGCCTCCATGGAAGTCCCAGATATTACCCTCTGAAATGGTGGC # Questionable array : NO Score: 5.48 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:-0.43, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCGTCCTCGCGGGCGGAGTGGGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTCCGTCCTCGCGGGCGGAGTGGGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.90,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //