Array 1 273579-273197 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZGM010000004.1 Pectobacterium polaris strain A668-S6-A17 4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 273578 28 96.4 32 T........................... AGTAAACAGCCTGCGCGTATGTCAATCGGCAG GA,T [273571,273574] 273515 28 100.0 32 ............................ CGCTGCAAAGAAAATTCATGAGTGGTGTTAAT 273455 28 100.0 32 ............................ GCGTCAGCGGGGCGGGGCGCTGTACTGCGCGT 273395 28 100.0 32 ............................ CACGGCGGGCAATTAATCCCTGTTGTCAGACA 273335 28 96.4 27 ...........T................ CGAAGGGGACGAGACAGCTTGCTGGCT 273280 28 92.9 29 ...........T.....T.......... CATTGCGTAGTGCCCATAACAACACAGCG 273223 27 85.7 0 ...........T.C........-...T. | ========== ====== ====== ====== ============================ ================================ ================== 7 28 95.9 31 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : TTTCACAGTCACTCACTCCCTTGAATTTTACTTAAGTCAATGCACTATTTTCCCTGTAAGGGCACTTTAACGGAAAAATGATGATTTTTAAATGTTAATAATGCCCAACCCGCAATTTTTCATTCCCTAAAAAATAAACTTATTACTTAAAAACGTTACGAAAGAAAGCCATCAATATGCGTTATTTAACGGGGTAAACGCATTGAGCACTTGGCGCAGAGCTACTTCGATAATAGCCAGACAATAGCGCTTAATGTCGCGGATAAACTGCCTGTGCGGCAGTGAACGAACCACCGACAGACAGGTTATCCGGCAGACTTTTCTAAGCTGCCTGTGCGGCAGTGAACTTGGTGCCAGGGACGGTGGTTATCCGTGATAACTTTCTAAGCTGCCTATCCGGCAGTGAACATGGCGAGGCGTTTTTCATGCCACATTACTGCTTTCTAAGCTGCCTATCCGGCAGTGAACGGATACAACGAGGCCAGCAAGAATCAGCAACA # Right flank : CTTATCAGAATGCGTCGCTGGCGCGACGCATTTCGGGAGCTATTCCCCGTTGAGTGTGACAACCAGCGAGCGACTGCCGCCGTGGTTGCGATGTTCGCACAGGTAGATGCCTTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGAATCATCAGGCTGTTTCCGAGCAAGCTGCCTTTCAGGTGCGCGGGCATGTCGTCGCTACCTTCATAAGTATGAAGGTAGTACGGTTCATTCTCCGGCACTAAACGATTAAAGAAGCTCTCGAAATCTTGCCGCACCGTGGGGTCGGCATTCTCATTAATCGTTAGCGCCGCCGAGGTATGTTTGATGAACACCTGCATCAACCCGACGTTTATCTGGCGCAGAGCGGTAACCTGCGCCAGTATTTCGTCAGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGTATCCACATCGCCACCTCCGGTTATCAGGCTTCGCGCGCCAGAATCGGTC # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 280222-279714 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZGM010000004.1 Pectobacterium polaris strain A668-S6-A17 4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 280221 28 100.0 32 ............................ ATCCAGAATGGCATACCGCTGGCCAGCGATGT 280161 28 100.0 32 ............................ AGCCCGTAGCAGTCATAAACACCCAGCGAGAA 280101 28 100.0 32 ............................ TTGGATTGAAAAGGCCATCCAGACGGTAAAGG 280041 28 100.0 32 ............................ AATTCGTTCACCCTTACTGTCAACTTCAATGC 279981 28 100.0 32 ............................ GTCGTCGTCAAACAGGCCAACCTCACGCACCC 279921 28 100.0 32 ............................ GGACGACTTCGTCGAGCCAATGTGGGCTATGT 279861 28 100.0 32 ............................ TGGCTTTCATCAAGCAAAAAACGAATCAGAGT 279801 28 96.4 32 ...........C................ ATGCGCGATTTTCTCAATGCGAAAGAAGAGGT 279741 28 85.7 0 ...........A.C......T.A..... | ========== ====== ====== ====== ============================ ================================ ================== 9 28 98.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TCAATATTGGCAAGCGTATGAAAACGAAGAGCTGATACTTTCCCCAATGCCCGGCGAACTGTATGTTTCCATGCTGGTGGGCGCATGCATGGCCGCCATCGGCGTTGTGAAATATCGACACGCTCGTCGCAACCCAGTCGCTCCACGCCCAACGAGTGCTAAAACAGTCGCCGCATTGCTGCTGATCGCGCTTTATCTGGCATTCCCTCTGCACCTCTACCTACGTGAACCGCTCCCCTACTGCGCCTTCAGCCCCAGCGGTCAGCAGTTAACAGTGTGTCTGGGAGACAATGACGAGCGGATTATTGTGGAGTGATGGGGATTGAATCAGATGGGGTGGAGAATAAAATCTGTAGCGAGCTTCTTCTCAACCCTTTTTTAACGGTTAGTCGTAACTTACTGATTTTTAACCACCCAAAACCGAGACTATAAAAAAGGGTTTTTCTGAAAAAACAGAGTATTCTCTTTAATAATCTGATGATTAGCATGAAATTTTTACG # Right flank : ATAAAACGCCGCAAAAATCAGGAATAAAAAACTCATAGGCAACGCGGCCTAAAAAGCTGGTAGTCTGTTTGGCCGACTGCCTGATACTGTTTAGGAAACGCGATGTACCACATTGATGACTTCGATCTGAAAATCCTGACGCTGCTACAGACGAACGGCCGCCTGACCAATCAGGAGCTGAGCGATCTGGTTGGGCTTTCTGCCTCGCAGTGTTCCCGCCGTCGCATCGCGCTGGAACAGGCACAGATGATTCTCGGCTATCATGCACGCCTGTCGCCGAACGCGGTCGGGCTGGAATGTCTGGGGTTGATTGAGGTGCGGTTGATCAACCACACCAGCGAATACGTTGAACGCTTTCATAACATGCTGGGGGAAGTGGACGCCATCATCGACGCCTATAAAACCACGGGTGATGCCGATTATCTGTTAAAAGTCGCCGTGGCAGATCTGCCCGGACTCAGCACGCTGATTAGCCAGATTCTGTCGCAGAACAAGAGCGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //