Array 1 85824-85591 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABAFH010000010.1 Megasphaera elsdenii strain PG-130-P53-9 Contig_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 85823 32 100.0 35 ................................ GGTGCCCGCCGCTTATCAATATAGATGTGGGCCAG 85756 32 100.0 35 ................................ CATAGCCAGGCGAATCATATGTTTACAGGCCATGG 85689 32 90.6 35 .........TT.G................... AATCGATTGTGCGGCTTTCCGTCTCATGTCGTCTG 85622 32 87.5 0 .........TT...................CG | ========== ====== ====== ====== ================================ =================================== ================== 4 32 94.5 35 GTCGCACCCAGCACGGGTGCGTGGATTGAAAT # Left flank : AGTCCTAAATCACGATGATCATGGTAATATTGGACAGCATCCACTTTGAATTGTTTGTTGAACTTCGTCATACTAAGGCCCCCTATATATACTTTTATTGTATCACTTTATGGAAAACCTTAGTTTGACTTGTCCTATTTATATGCTAGCACCACA # Right flank : CTTATCCTGTTTATCATCGGAACGGCCTTTTTATCGTAGTTTCGCCAGAAGACTCCTTCCTCTTAGGTAGGGGATGAATGGCGATGGATTTCGCAGGTTCGATGCCTGCGAAATCCACCCTATGTCTTTTCCATCTTAGCCTTTTCACTTCGTCTACGGTATAATGGTAGATAACAGAGGAGGTGAATCCTAGATGTACTTGACGCAATCAAATGTCATCCGCGGCTTGCCGAAACAAGACTATACGATGCTCCGGGAAATGTGCCAATGCAGCAATAACCTGTACAATGTAGCGGTCTATACGATTCGGCAGCATTACTTCGATACCCAGCAATTCTTGCGGTACGAAAAAAATTACCCCATCTGCAAGAAAAATGAAAACTATGGCTTGTTGCAGGCCGGTGTCGCCCAGCAGATATTGAAGATGGCCGACCGTAGTTTTCGTTCTTTTTTCGGGTTTTTGCAGAAAGTCAGGTCAGGTGACTATGGTTCAAAGGATG # Questionable array : NO Score: 8.58 # Score Detail : 1:0, 2:3, 3:3, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCAGCACGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 68076-68241 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABAFH010000014.1 Megasphaera elsdenii strain PG-130-P53-9 Contig_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 68076 32 100.0 32 ................................ GACGGTTCGGCAAATATCACAATCCACGCAAC 68140 32 90.6 38 AGA............................. GGAAATTTGATGTCGCCGACGGTGACGTCCGCCAAGAT 68210 32 90.6 0 A.............................GA | ========== ====== ====== ====== ================================ ====================================== ================== 3 32 93.7 36 GTCGCACCCTTCACGGGTGCGTGGATTGAAAT # Left flank : TAGACGGCTACGTATCTGCTAACCTAGCCCGGAAAGTAACTGGTTTCAGTGAGGACGATTTACAGTATTTATGGAAGGCTATCATTAATATGTTCGAATACGACCATTCCGCTGCCAGAGGGAATATGGCTGTGCGCGAACTCATCGTATTCAAACACGATAGTGAATTGGGAAATGCTCCAGCATATAAACTTTTTGATACTGTTCACGTCCAGAAAAAAGAAGGCGTCGTCGCGCCCAGAAACTATACGGACTATGACGTAACTGTAGATGAAAGCAAAATCCCGGAATACGTTACGTGTACCCGGATGATTTAAACGTAGGAAAGAGGGGGTGCGAAGCCGTATCACACATAAAATATATCAGAGCTTCGCATTCATCTTTATTTCTATAAAAATAAGCAATACCCGGAGAATTGACTCAAAAATTGAACTGCTATTCAATCAGTTCGCAATATGATTGATGAGAGAGCAGATAGTGACTGAGCCAATTTGAAGGCT # Right flank : ATAAGGTAAAATATATTTCGCAAATTTAATTTCATAAAAAAATGGGTCTCGATCTCGTACGGCTCAAAGGTGTATATGTATATTTTGCGGATCCTGTCGTATAGTAGTAATACGAAAACTGCCGCACGAAGCAAATTTGCTTCGTGCGGCAGTTTTTTTATCATAACAGTTATCCTTTGTAAATGAGGTCAATGAGTTTCATCGTGACTTCATAGGATTTTTCTAGACTGGGAAGGGGCAGAAATTCATAACGGGAATGGAAATTCAGGCCGCCTGTAAAGTAGTTTGGCGTGAGGATGCCTTTTGTGGAGATAAAGGAACCATCCGTACCACCGCGCATGGCAATGGGTTTGGGCTGAATCTGCAATTCCTTGAATGCATCGAAAATGTAGTCGATGGCCTTGTGATTGTCATCGGTAATCGCATCGGCAATATTGCCATAGGTATCTTCCATTTCGCAGGTGATGGCAGCCCGCGGTTCCATCTGCTTCAGCTTTTCT # Questionable array : NO Score: 8.36 # Score Detail : 1:0, 2:3, 3:3, 4:0.69, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCACGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 26942-26100 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABAFH010000008.1 Megasphaera elsdenii strain PG-130-P53-9 Contig_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 26941 32 100.0 37 ................................ GTTTTTAATCTATCCGCCATACCTTCCGCCAACGCGG 26872 32 100.0 35 ................................ TAAGTTGTTATTGATGTAGTCCAGGACGCCTGTGT 26805 32 100.0 35 ................................ GAGGCAGCTATCATCGATAACGTCTCCAAAGCAAT 26738 32 100.0 37 ................................ AGCTCCTAAATATCCCCGGTGAGTAGCGGTCATCCGG 26669 32 100.0 36 ................................ TACGCCGAGGGCGTGAGAATGTTCCTGGGGCTTAAA 26601 32 100.0 36 ................................ AAGCAATCATCCGAAGAGCGTCTGTCCGATTGACAC 26533 32 100.0 35 ................................ CGGGCGATGTCCTCGGTCGCGCTCGTCGGCCAGGC 26466 32 100.0 34 ................................ ATTGGACGTCGTTTTTTTACGTTCTGTCATATCA 26400 32 100.0 36 ................................ AGAGCAACGCCGTCACGGCGGACAAACTTAATGTCG 26332 32 100.0 35 ................................ ATCAGCAGGTGACGTCACAGGCTGAAGCTGATCGC 26265 32 100.0 34 ................................ TCTGATCCACTTTTTGTTTGCTCTTTTCCTACAG 26199 32 100.0 36 ................................ GTCTGTGACTACATCGCGGATGCGGGTATCCTCGGC 26131 32 96.9 0 ....................A........... | ========== ====== ====== ====== ================================ ===================================== ================== 13 32 99.8 36 GTCGCACCCTTCATGGGTGCGTGGATTGAAAT # Left flank : ACTTAAATGATAACTAAGTCGCGTCGATACTGGATTTTATGGTATAATATAATTGTCGTTTTTGTGGACTCCACAAGGACGTGGATTGAAATTGTAACGTTGAATAGTAAGTGAGGTGGAAACCTGCCGTATGCTAACCCTGCGGCAGGTTTTTTCTATAGCTATTAAATTACTAATCAACATTACAGAATAATATATTGATTTTCTATGGTGAAAGAGGTATACTAACCATATAAAATAGATTACCGAATTAAGACAGGGCATCTTGGCTATCCGTATATGTAACCCGGTCATACCGAACTCTGTCAAGACTGATTTATAGGGAGAAAGTGGTGCGAAGCGGCATCACACATAAAATATATCGGGGTTCCGCGCAGGCCTTACTTTCTATAAAATTAAGCAATATCCAGATAATTAACTCAAAAAATTAGATTGGCTTTCTCTCAGTTCGCAATATAGATGATAGAAAAGCAGGCGATGACTGAGTTAATTTGAAGACT # Right flank : CACATGGAGGCTCCGCCTTGTACGGATACTTACAAGTCTCACCTTTCATGGGAAAAAAGAATGTTAACTTACTTTAGATTGTTCGGGCAAAATTACTGCGGAAGAGAATCTTCAATGGTGAGAATCCGTATTGGGATGGGGAAATGTTTTTATGGATCAGCAGTCGAATTTTACAATATAATGAGGGGTGTCTGTTATGGAATACGATGAAGATGATTTTTTGATGATTTCAGGGATACAACATTTTTCATTTTGTCCTCGACAATGGGCCTTGATTCACATCGACCAGGTTTGGGATGAAAACATGAAGACGATGGAAGGCAATATTATCCATGAAAATTGCCATAATCCAGATTTTATAGAGAAGCGTGGTGAAATTCTTATTTCTCGCGGGATTCGGATTGCTTCAAGGACTTTAGGTGTAACTGGACAATGTGATGTGGTGGAATTTCACCGGGATGATGGTGGAGGTCGTTTATATGGACATAATGGCTTATGGC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCATGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //