Array 1 269587-269360 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHNN02000011.1 Leptospira borgpetersenii str. UI 09149 ctg7180000003409, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================= ================== 269586 29 100.0 32 ............................. TGCCTCCGCATCCTTTAGAGCGCATGGGAATC 269525 29 100.0 33 ............................. TTTTGTGCGAGATGGGAACCGGCGAGTGTTGCG 269463 29 96.6 45 ..T.......................... TTATCGTTATACGAAATTCCACTCACTTCAAGATCACCTGATTTC 269389 29 96.6 0 ..T.......................... | C [269361] ========== ====== ====== ====== ============================= ============================================= ================== 4 29 98.3 37 CTATTCCCCACATGCGTGGGGTTGAACCG # Left flank : TACTTAAACGAATTATTCCCGATATCAAGGAGTTGATCTATGGTGGTTTTGATTTTGGAGAGAGTGAAGACTTCTCAGAGGGGAGAGATGTCGCGGTTAGCCATTGAATTGAAGCCGGGCGTTTTTGTAGCTTCCATTAATGCGAGAGTTCGAGATCGAATCTGGAAAAAAATTTCCGAAGAATGGAAATCCGACGCGATCATGTTGTTTTCGAGCAACTCGGAACAGGGTTACGGCATCCGTTCTCACGGCGATCCTTCCCGCGAGATTATGGATTTCGACGGTTTACTTCTCATGTCCAAACCCGATCCGAAACGTGATCAGATAGAAGTCATGAATGATTCCGATTTTTCTATAACCACCGAAGACGAAGTTTCTCCTTTTTCAGATCTCAAAGGCTTTTTCAACGAAAAGGCAAACCGCCTTCTTTTAGAAGCAGATGTTCCTGATGAATCTTAGGATCAGACATAATTCTGAAGATTCCTATACAAACTTTTAGC # Right flank : AAAAAATAAAGGAACAGAACAAACGTAGGGCGCGTCCAAAACCAAATTCTGCTTTATCAGAAAGATCATTTCTTCAAAGATTTCTGGAGTCGTTTTAAACTTTGATATAGATTTTCCTTTTATCTAAGAAACTTAAAATTCCCCACCAAACAGACAAATGAAGAACCGCGTATAATAACGATGCAAGATACGGATCTGCAAATAAAACAAGTTTAGAAAAAAACCAAACTTTGACACCGACCGATTTTCCATTCTCCAACACGATCGTCCAAAAATTGAGAGTTCTCGCAAGAATTCCGGAACCTACAAAGACTAAAATCGCATTTTTACCGAATACAAAAAACGGTTGAAAAAAGATTTTCAAATCCAAACCGTTCCACTTTTTCAAAAGAATTAAAGAATCTAAATATTCAAAAAATCCTATACACAAAAAAGAGAGCCCTGTCGTATATACCGCGTAACTTCCGGTCCAAAGGCTTTTATTCATCGGTAAACTTCGA # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 24074-23679 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHNN02000022.1 Leptospira borgpetersenii str. UI 09149 ctg7180000003401, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 24073 29 100.0 32 ............................. AGACCGAAGGCACAAAAAGAACCAATAACTTC 24012 29 100.0 32 ............................. TCCGTATTTTGTTGGATTATCTGTGATGAAAG 23951 29 100.0 32 ............................. TCGTCTGAATGTATCTTTACGAGCATCTCTGC 23890 29 100.0 32 ............................. CAATGTGATTAAAGAATGTAGGTCCTAAAGCA 23829 29 100.0 32 ............................. AGAAACTTAACATCAAGTACCATCATCAATTT 23768 29 100.0 32 ............................. AGATTTGGCGTGAGTCGAGTCTTTACGGACGC 23707 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 100.0 32 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : ATCCCGAATAATTGCGACCTCTTGTTTCGTTCGATGTGTCAATGTGATTCTTAGCCCGGTTCCGCATTTTTCAATGAAAATTGATTTATAGATAGGAAAGACACTCAATAGTTTATCGTAGAATGGAGAATTTTTTATATTTCAAAACGACAGTTCCCTTGGAGTACAACTCTGGTGAAATATTTTAGACAATCCTCTTAGAGGTTTTTCACACTTTCAGTCGGTATTTAATATGGGCACCTTACTTTTACTCTTTCTAATTTTGTTTTTAGTTACTTCTCTTTTTTCAGCAGAAAAAAGTAAGCGTACCTTAGATGTTAACACAGTGGCAATTTTCAAACACAGGGTTCCGCGCCGTATATCAGCGGGACTTGATTACGGATAAGTTTCCTGAGAAGCATATGTTTTTAGTAAGAGATTTGCCATCATAGATTGACTCGAACACAAAACCCAAAAATAGATTGCAAAAAATCCGGATTTATCCTATACAAGTTTTTAGC # Right flank : GTTTCAGAGGCAAGGATCTTTCCATAACGTTACCCACAAATTAAGAAGGCTTTTGGGATCATAAGGATCAAAAACTGATATTTTTCAAGTGTTCCGACAAGAATGAGGCTTTTTACTTGCAAGAAGTATGATTTTGTGGTAAAGAAAACCTCCCGAGTCTTCCCACCGCCTCTCCCCTCCACCCAAAATCAGGGTGGGGCGTAAGTTTCACAGAGGATTTGTAGTAATTCCGACAGATTTATCTTCAGATCCAAGTATTTGTGGGTAAGGTTATGGGATCTTTCGGGTAACTCACTTTTCCCCACATGCGTGGGGTGAATGTACGTAAGATCCATAAACACCAAAATGAGGTACGTAATTGTGGAACTCCCACGTTCAGAAGACCGACAACAGTGTTGCGGCGATTGATCAGACTGGCATTCGCGTGTTGTTGGTATACCGCAAATAGGAGTTGTTCTTAGTCTTAAAACAACTCAGCACAACACTTCCTATGAAGCGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //