Array 1 41094-39479 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZOK01000015.1 Escherichia coli strain HT2012036 NODE_17_length_211785_cov_36.199654, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 41093 29 96.6 32 ............................T AATGCAGTACGCGCCGGATCCGGTGTTACGTC 41032 29 100.0 32 ............................. CATCCGTTCAAATTCCATCAGATAGCAAACCA 40971 29 100.0 32 ............................. TATTGTTGACTGCTACGAATACGCAGACGAGC 40910 29 100.0 32 ............................. GCGACGATACCTGTGCGAGCTGAATAAAATAA 40849 29 100.0 32 ............................. CTGCGCGACCAACGGGAACAGGGCAAATGTGA 40788 29 100.0 32 ............................. TCGCACTCAATTTCGTCAGTGAACGGGAACCC 40727 29 100.0 32 ............................. ACGCCGAAAACGGTTGGTGCGTATAGCGATAT 40666 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 40605 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 40544 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 40483 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 40422 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 40361 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 40300 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 40239 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 40178 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 40117 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 40056 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 39995 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 39934 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 39873 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 39812 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 39751 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 39690 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 39629 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 39568 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 39507 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 67008-66796 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZOK01000015.1 Escherichia coli strain HT2012036 NODE_17_length_211785_cov_36.199654, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 67007 29 100.0 32 ............................. CCGGACACTACCGAACGACAGCGGCGGCGGGC 66946 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 66885 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 66824 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 4 29 99.2 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //