Array 1 58562-56963 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSAM01000004.1 Salmonella enterica subsp. enterica serovar Typhimurium strain B3172 NODE_4_length_191304_cov_82.911602, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 58561 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 58500 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 58439 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 58378 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 58317 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 58255 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 58194 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 58133 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 58072 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 58011 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 57950 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 57889 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 57828 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 57767 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 57706 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 57644 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 57541 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 57480 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 57419 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 57358 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 57297 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 57236 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 57175 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 57114 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 57053 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 56992 29 96.6 0 A............................ | A [56965] ========== ====== ====== ====== ============================= ========================================================================== ================== 26 29 99.7 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 76614-74694 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSAM01000004.1 Salmonella enterica subsp. enterica serovar Typhimurium strain B3172 NODE_4_length_191304_cov_82.911602, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 76613 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 76552 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 76491 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 76430 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 76369 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 76308 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 76247 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 76186 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 76125 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 76064 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 76003 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 75942 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 75881 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 75820 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 75759 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 75698 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 75637 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 75576 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 75515 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 75454 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 75393 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 75332 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 75271 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 75210 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 75149 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 75087 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 75026 29 96.6 32 ..........T.................. GGATATGTGAAGTTCAGGTAGCCCATTACGCA 74965 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 74904 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 74843 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 74782 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 74721 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 32 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //