Array 1 3611930-3612812 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP053336.1 Salmonella bongori serovar 48:z81:- strain 08-0158 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3611930 29 100.0 32 ............................. AGAACAGTATATTGTCGCCGAGCGTTACACGT 3611991 29 96.6 32 ............................T GACGCGCCAGCTCCACGCACATGCCGCGAGTC 3612052 29 100.0 32 ............................. CCATATTTAGACTTGTTCCCTATCGTTGCTGG 3612113 29 100.0 32 ............................. CCGCAGTTGCCGTTAACACTCAGATTATTAAT 3612174 29 100.0 32 ............................. TCAGTACAGAATGATTCCCCTGTTATTGGTGG 3612235 29 100.0 32 ............................. ATTTTTTGATTTACTATCAGCGTATAATTGGG 3612296 29 100.0 32 ............................. ACGACTCAGGATCTCCAGTGTTACGTAGAGCG 3612357 29 100.0 32 ............................. CGCCTAAACTCAGGGCGATCCAAATTTTTCCC 3612418 29 100.0 32 ............................. TCCGCCTGTACATTCTGCTAAGAAGTGAAATT 3612479 29 96.6 32 .................A........... GCGTTGGCGGAGACGGACTTGCAGCCCGGCAG 3612540 29 96.6 32 ............................A CTTGAGCATGAACACATCATGCAGGTGACACA 3612601 29 100.0 32 ............................. CAGATATTACTGCTCTCCGTCAACTGGTAAAC 3612662 29 100.0 32 ............................. GAACGTGGAATCAAACACGCACTGGTTAATAC 3612723 29 100.0 32 ............................. GCGGTTTTTTTATCAGTCAGGGTGAGGGAATA 3612784 29 96.6 0 ..........................T.. | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGCGAATGAAATCAAGCATCCGGTTGGACGAGTACGTGATATTGAGGCGCTGGATGAGTTGTTAGCCACGTTGAGCGACGATAAACCGAGAGTGATTGCTTTGCAGCCCATTAGCCAAAAAGAAGACGCGACGCGTCTGTGTATTGATACGTGCATTGCGCGTAACTGGCGACTGTCTATGCAAACGCATAAGTATTTAAATATCGCCTGATATGCTGTCCGTTCTACGGATGGCCTGTCGTCGTGTGTAATTTATCTATCATCTTGCGTTCGCTATTTCTCCAAAAATTCGAGGAATGTATAAAGTAGTTGAATAATTTTCCATAGCGAGACATGGATCACACTATTCTGGTGAGTTTAAAGAAAAAATCGTTCACTGAATTTTTTTGTATCAAAATCAGCTGATTAGATGTTCTTTAAGAATTTAAATTTGTTGCAATTATGTTGGTAGGATGTGGCGTTGATAAAAAACACTGAATAAACAATTAGGTATATTTAGT # Right flank : GTTCCATAACCATAATCTGCGTACCAGTAATCGTTCGTACCAAACAGTAAAGTAAAAAGAACCGTGTTTTGTGGGGGATAAAGGAGAGGGTGATGGCGTTAACGATTAAGGTATTGCTCGAAAATCATAAAGCCGCTGGTGTGGATAACGCTTTGAAGGCCAGGCCAGGATTAAGCTTATTAGTTCAGGATGAATCTACCTCGATATTATTCGATACCGGACCTGACGACAGTTTTATACAAAATGCGTCGACAATGAGGATCGACCTGTCTGATATATCTGCGGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTACCGTGGCTTCCTGATAATAGCCGAATCATCTGTCATCCAGAAATGGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGTTACCGAATGGTGTACGCGCGCGACCCTATGCCAATTAGCGACAAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3628805-3629445 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP053336.1 Salmonella bongori serovar 48:z81:- strain 08-0158 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3628805 29 100.0 32 ............................. ACGAGTTTCCGCAGTCCGGCAACTATGAAACC 3628866 29 96.6 33 ............................A AGAGACCGATGCACTCGGCCAGCCGTTGCTGGA 3628928 29 96.6 32 ............................T GGCGCTGAATGCGGTTCTGCATTAATTCATCA 3628989 29 100.0 32 ............................. CAAAACTGGAAATGTTCACGTCGTCCCCCTTT 3629050 29 100.0 32 ............................. GACATAACCGGGTTTTGCCGACACAAGGGGTT 3629111 29 100.0 32 ............................. CACACAATATATAATTGTGCTCCACATGGTCA 3629172 29 100.0 32 ............................. ACGAGTTTAAAAATAATGGACGCTAAAAATCA 3629233 29 100.0 32 ............................. CGTATGGAGAGATTGGCAAAGATTTAGGGTAG 3629294 29 100.0 32 ............................. GTCAGAATGACGAATTTCCCTGAATTATCAGA 3629355 29 100.0 32 ............................. CAATGACCTCCCACCATAGTACCAATACCAGC 3629416 29 86.2 0 .....................C.TT..T. | T [3629441] ========== ====== ====== ====== ============================= ================================= ================== 11 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGGCCGCCGGAGAAATTGAACCGCCTCAACCCGCGCCGGATATGCTGCCGCCCGCGATACCGGAGCCGGAATCTCTGGGTGACAGTGGGCATCGGGGGCATAGTTAATGAGCATGATGGTGGTGGCAACTGAAAACGTACCGCCGCGTCTGCGAGGGCGGCTTGCCATATGGTTACTGGAGATTCGTGCGGGCGTTTATGTTGGCGATACCTCAAAACGCATTCGGGAGATGATCTGGCAACAGATAACACAATTGGGTGGAGAGGGAAACGTAGTAATGGCCTGGGCAACAAATACGGAGTCTGGTTTTGAATTTCAGACCTGGGGGGAAAACCGCCGTATTCCGGTAGATGTAGATGGGCTCAGGCTGGTTTCCTTTCTTCCTATTCAAAATCAATAAGTTGAAGGCTCTTTAATAATAAGGAATTGTTGCTTTAGCGTTGGTAGGTTGTTATTAAGCCAAAAAACGTTTTTAGAACAATTACATAGATTTAGA # Right flank : GGATGTTCTGACACGTGGAGTGGTGAAATTGACTATCTGTCAATAAGACAACATGATGGACCATAATCATGGCTGCCGTCCGTATTGCTGAAATATCTCTTTATATGCTGCGGGGCGCAGATACGTCCCGCGCCAGTATGACTATTTGGGTTGGATGGGCGCCGCCTTTGCCAACTCTTTTACCAGTGGCAGCATTATCCGCACCACGTCGCGGCTACGGCGCTCAATTCGCCCAGGTAAGGCTTTATCGATATGCTGTTGATTATCCAGCCGTACGTTGTGCCAGCTATTGCCATCCGGAAAAGAGGCATTTTTCGCTCTTTGCTGGTATCCATCTTTTTTACCCAGACTCCAGTTCGTCGCTTCAACGGAAAGCACAGAAATCCCGGCGTCATCGAAAACTTCCGCATCATTACAGCAGCCAGTTCCTTTAGGATACGCCGGATTGAGTCCCGGATTCGTGCTGGCGGCGATACCATGTTGACGCGCGATGGCTAATG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //