Array 1 328-11 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJML01000110.1 Neosynechococcus sphagnicola sy1 strain CAUP A 1101 synech5_rep_c451, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ===================================== ================== 327 35 100.0 35 ................................... CAGYTTTTCCCTGACCCCTGTGGGCAGTTGCAGTA 257 35 100.0 35 ................................... ATAAACGACCCCCCGATCCGTGTCGATAATTCCAA 187 35 100.0 35 ................................... ACGATTATCCTTCAGTGCATCGCAGACTTAGCTCG 117 35 100.0 37 ................................... TGAGGCGACAGGTMTTTGMAGGGGTCTGGTTTRAGCC 45 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ===================================== ================== 5 35 100.0 36 CTGCTAAACCTCTGATGCCGTAAGGCGTTGAGCAC # Left flank : AGGCGTTGAGCACCCGCAACAGCGATCGCTGCCACGATGGACGGCACG # Right flank : CAAACAATCAG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTAAACCTCTGATGCCGTAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [11.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 631-33 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJML01000111.1 Neosynechococcus sphagnicola sy1 strain CAUP A 1101 synech5_rep_c454, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ====================================== ================== 630 35 100.0 35 ................................... CCAAACTGTTTGGAACCGGGGAACGGAACCACATT 560 35 100.0 35 ................................... TCCTCAGACGGCATGAACCAGCTTAACGGCTACAC 490 35 100.0 35 ................................... TCACAGAATTAATAATTTTATCAGCGGAGAAAGAC 420 35 100.0 34 ................................... CAACTGGAACAATTCAGGAAAATCAAGAGAGATC 351 35 100.0 38 ................................... GTTTTCACGCTCGTTAATTTGCAGTGGATATGGCACGA 278 35 100.0 35 ................................... CTGGTTTTCCCTGACCCCTGTGGGCAGTTGCAGTA 208 35 100.0 36 ................................... AATAAACGACCCCCCGATCCGTGTCGATAATTCCAA 137 35 100.0 35 ................................... ACGATTATCCTTCAGTGCATCGCAGACTTAGCTCG 67 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ====================================== ================== 9 35 100.0 36 CTGCTAAACCTCTGATGCCGTAAGGCGTTGAGCAC # Left flank : GAGATGGCGCACT # Right flank : CTGAGGCGACAGGTTTTGTAGGGGCTGGTTTTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTAAACCTCTGATGCCGTAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [26.7-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 225-42 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJML01000017.1 Neosynechococcus sphagnicola sy1 strain CAUP A 1101 synech5_c17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 224 36 100.0 37 .................................... ATAAACATCCCCAGTCCCATCGGGGAAGAGGACTACA 151 36 100.0 38 .................................... TTGTAACAGCACTCGATAATGCTGCCATCCCCAGCGGT 77 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 3 36 100.0 38 CTCCCTACTCGTTAGGGAAACCAATTGAATGGAAAC # Left flank : GAGCTTTTCATGCGTAAATCAATACCCCTCGCCATCAGTTGCGCGATCGCGCTCTCTGCCCCAGCAGTACCAACTCTGGCAGAATGCGCGAACTTCTGGACAAACGCACAGGGCCAGCAAGTCTGCTTTGACGGGTCGTTTAGGCCGTCTTCAGAACCTGAGTTCGCCAGTCAACTGGTAGGGATCAAGGGACTCTACTTGAGATGGAGGGGGACTGATTTCTTGATACTCAAGGGCTTTGTGGTAAACATCAGCGATCGCCCGATTCACGTCTCTTTGCTGGTCGTGAAGTTTTTGCGGCATGGCGTGAATTTGCATGAAGAGACTGTGGCGATTAACAAAGATCTATCCCCAGGTCAGGCGGGCGCAATCAACTGGACAATCAGCGGGTCGGATCTATCCAACGCTTCAGTTAGCCAAATCAAGATAGTGCCAACCAAGATCGTCGCTGAGGAGAATTGACGGCATTGCGGAAGATCTGGGCCGGGAGTATATTTCTG # Right flank : CCAGGACTTCCATAATGCCCCATTCGGCCACTAGCAGGTCAG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCCTACTCGTTAGGGAAACCAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.20,-2.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 1002-1407 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJML01000017.1 Neosynechococcus sphagnicola sy1 strain CAUP A 1101 synech5_c17, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 1002 36 100.0 36 .................................... CAAAGAGTGATCCACGATCTATGATCCACCGATCCC 1074 36 100.0 41 .................................... TGTCTGTGTAGGGGAAATGTACCCGAAGCTGACTAGGTAGT 1151 36 100.0 40 .................................... CTGAAGGGTTAATGCTGGCCATGGCGGCGGCACTGGAGAA 1227 36 100.0 36 .................................... TATATTTCCTTTTAAGTGTGCAGCTAAAATCGGGGC 1299 36 100.0 37 .................................... CAGTTCTTATCTCCATCGCGCCCATTGAATGACTCTG 1372 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 6 36 100.0 40 GTTTCCATTCAATTGGTTTCCCTAACGAGTAGGGAG # Left flank : AGAAATCAGTCCCCCTCCATCTCAAGTAGAGTCCCTTGATCCCTACCAGTTGACTGGCGAACTCAGGTTCTGAAGACGGCCTAAACGACCCGTCAAAGCAGACTTGCTGGCCCTGTGCGTTTGTCCAGAAGTTCGCGCATTCTGCCAGAGTTGGTACTGCTGGGGCAGAGAGCGCGATCGCGCAACTGATGGCGAGGGGTATTGATTTACGCATGAAAAGCTCACTGAATATTTGATGGCCGCGATACACATTAGAAAGCCGCTTGAGCCGCCACTTTAGCTTTCTTCATGATGTCGTCCAAGACCTGGAGAGTCGAATTAGTCATGGCCTGAGTCCCGTTCGTATCTCCAGGAGCGGCGTTAACTGTCACTTTGTTATCATTATTTTGGTTGATTGTCACGCCCCCGCCGAAGCCAGGTTTACTTGGCGACACTAATTTCTCCAATGCCCCAGTAACCTTTTCCAGACGTTGATCGGTGGAGCTGGCTTGGGGCGATAG # Right flank : GTCCCTTGATTGAACCCTATATGAGGCAACCTGTCCAGAGGGCGTTTGCGAGGGATCGGCTGGCCGTGGCATACTTCTCGGAAAAATACGAGTCTAAAAACTCTAGAACCTTTGCTCCATAAGCTATCGAGGGTTTCAACCAAGGAATAGGCATTTCGGGCATTTCGGAGATCCCTCGCGAGATTGTCTAAACGATGACTGACCCCGGCAGTTGACTAACAGGCAGACCACCCCAAACTTCAATTTTCTCAAGGGTGTGACTCGACAGCGGATAAAAACGGATGCTATCTTCAGAAATCACAACTTGCTTTTTTAATCGTTTCTTAAGTTCTGTATATTTAGGGGCGGTCAAAACACATTCAAACACACTATACTGCACTCGCCTGCCATAGCCTTCCAATAAATCTGATATTTTTTTGCGGCGTTTATCCACTGGAATATCGTAGGCAATAATGTACAGTAACATCTGATTTTAGCGAATTTGGTAAGGCTGATAAATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTCAATTGGTTTCCCTAACGAGTAGGGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.20,-2.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 226-50 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJML01000021.1 Neosynechococcus sphagnicola sy1 strain CAUP A 1101 synech5_c21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ==================================== ================== 225 35 100.0 35 ................................... CCCCTGGAAGCCCGCCTATTGACAATTCAGCCTGC 155 35 100.0 36 ................................... AATACTTTTCCCGCCCGTATCGACTTGGAAGGTTGG 84 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ==================================== ================== 3 35 100.0 36 CTGCTAAACCTCTGATGCCGTAAGGCGTTGAGCAC # Left flank : GCGATCCCAAACGCTGGCGCAATGCCTATAAGCTACTCCAGGGCTATGGAGAGTCGCTGCAATATTCTATTTTTCGCTGTTGGCTAACTCAGCGCGATCGCGAAAAATTGCGGTGGGAGTTAGAGAAAATCCTGGTTGCAGAGGATCGACTGCTGTTGGCTGGGCTTTGCCATCGTTGTGTTGAGCGTATCCAGAAATGTAATCGTCCCGAAGCATGGTGTGATGATGCACCAGGCCATCGAGTGATCTAAATTCAAGCATCGGTGTTTGTATCAGCATCTCACTAGGTTCCGAACCGTGTAATCCTTATCCAGAGAGGCTTTGTACCTCCTCTCTACCCTTGGGAGATACTTGCAAGTTCGGAACCCCTTTCCCAGCAAGCGATCGCGGTACAGCTTATAGTGATAAGACTAGCCGAGAATGTATTTTCCAGGATTTACAGCAACCTACTTGTTAAACTTGCTGAGAAAGCCCTCCCAGCAGGGATTTCAAGGATCGGA # Right flank : CGGTTGCCTCAATTAACACCACCGTAGTGGTGCGACTGCTAAACCTCTGA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTAAACCTCTGATGCCGTAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 54853-54589 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJML01000044.1 Neosynechococcus sphagnicola sy1 strain CAUP A 1101 synech5_c44, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 54852 37 100.0 44 ..................................... TCCAAGTGCGATCTGAAAACACTTTAACACAGAAAAAAACACCC 54771 37 100.0 36 ..................................... TATTCAATTCATGAATCTTGCCCTCATTGCTAAAAA 54698 37 91.9 36 ......GC.....G....................... ATCCTAATACCCCAACCGAAAAGAAAAAGGTCTTAA 54625 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================ ================== 4 37 98.0 39 CTCGCACTTCACTTAATCCCGGTCACGGGACTGAAAC # Left flank : CTCAGAATAAGGTGCTTGATTCTCTAAATTCTATAGT # Right flank : AACAAAATTCTGCCACAGTCTAGACCTGCACTAGAGTTTTGACTGGCTGGTTGTTGTAATGGATTTCGTATTCCTCTCCCAGCTCTTCTTGCAACTGCTTTGCCAGTGCTAATCCTTCCTGCTCCCAAGCAGCTTCTGCTTCAGGACTTGGAAAAGCGATGGCGTAAGGATCTTGTAGATTGAGAATGGCATCATAGGCAGTCTGCCATTGATTCAACCCATCAATGGTTTCCTGACTCAGCGGAAACTCTGACGGCTCACGCATCTCACCTTCTTCGTCCCACAAAGGGTCGCAGTTGTAGTCTGCGACTAATCTAAGTTTTTTAGGCATCTCGCTCAGCTCTCCTCTGGAGTCTTTGGAAAGTCTTTCTACCAACGGGATTAGCGCCAACGATAAATCCATTATCGCCTACGTCCACTGCGACATAACGAATCTGACCATTAAAAAAGATCCGATAGACATTCCGGTTGCCCTGCTTTAAGATAACTTCCCCCAACGT # Questionable array : NO Score: 2.76 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGCACTTCACTTAATCCCGGTCACGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.10,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 1 55679-55932 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJML01000046.1 Neosynechococcus sphagnicola sy1 strain CAUP A 1101 synech5_c46, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 55679 36 100.0 38 .................................... TACCACTTCCCTAGTGGTATCGTGCCAGTTGAAGTGCA 55753 36 100.0 36 .................................... ACGGATATTAACTGATTTGTAATGGCATGAAGATAA 55825 36 100.0 36 .................................... ACGGATATTAACTGATTTGTAATGGCATGAAGATAA 55897 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 4 36 100.0 37 GTTTCCATTCAATTGGTTTCCCTAACGAGTAGGGAG # Left flank : TCGAAGTATGTGCCACCCTTATGTCCGCTTTCTTGAATAACTGTTGGGTAACAAGGGGCACTAATTTTAGAAGCTGCGTATTCAGAAGCTAATATTTCCAAATGAGTTTCTGGGCGTTTATCTGGCAAGTAGTCATCGTTTTCAAAACCTCTTAGCCTACCTTTGTTTCCATTCAATTGGTTTCCCTAACGAGTAGGGAGGGGCAATAGTCATGGTTTCGCAGTTTCGATAGACGGAGGCGTGGAGGGAAGGGGTTCTTTCCCAATGTCGTACCACAGCAAAACGACAAATTCCTGTTTATCAGGATTTTCAGGATCACTCTTCAGATCGTCACCTTCCTGCTGCCATTCATCCCCTTCTAGTTCGTTGTTGATAAAGTCAGCTAATTCCGCTGCATCCTGAGGGGTTGCCTGCCGTTTGTTGGCTTTCAGAATCTCCAAAACACGCTCTTGATCAACCATTGCTAATAGATCCCTTCCTTATTTTTGCTGGTTTAGTGA # Right flank : ACGGATA # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTCAATTGGTTTCCCTAACGAGTAGGGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.20,-2.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA //