Array 1 992-1485 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHYS01000003.1 Clostridium botulinum strain 58272-CD map unlocalized plasmid p1BKT015925 contig_3, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 992 30 100.0 37 .............................. CGTATGTAAATACATAAAACATAGTAGAAATAGAGTA 1059 30 100.0 36 .............................. AACGCTCCCACTTCATTTATGCTAAACCCTCCTACA 1125 30 100.0 35 .............................. CTTCTGTAATGCCTGTAACTGTTACATCTGCTCCT 1190 30 100.0 36 .............................. ATTTGGTAATGCAGGTATACAAGTAGTACAACAACC 1256 30 100.0 35 .............................. TGTGTTATTCAAAGCACACCCAAATAGCGAATTAT 1321 30 100.0 38 .............................. TTTAAATTGTTAAAATATTTTTTAAGTTCATTTTATGA 1389 30 100.0 37 .............................. TTAAGTATATTCCATTTTGATGAAAAACAAGCAATAC 1456 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 8 30 100.0 36 ATTAATAGATAACAAGATTTGTTTTTAAAT # Left flank : AAAGAGCATATAGCTAATGTTCGATTTATAGAAGATATTGATATTGAAGATATTCATGATGATATAGCACAAATAAATAGTCTATTTCCTTACAGTATCATTAAAGATATTGAGGCTAACAAACCAGAGTATTGTGAAGATAGGATATCTTACTTTTTAAAAGAAACTATGCCAATTGGATATGATGATAAAGGATTGTATGATTATGATACATTAGTACATACAAACCATGAGATATATGAATTAAACAATACGAACAATATATATAAAATTAATAATAATATTCTATATTTCTTATAAATTTAGATATATAATAATAGAATTTTCCCAACTAAAATAAATATATATTATTAATTAAAGGCGTATAATACAATACTTTGATAGAGTTTTTGAATTAATTATTTAAAAAATTCAATTTGGTTGGGAAAATATAAGATGAACCGTTGATATATAATGGTTATAGAGAAAATACAAACGATAAAAATGGCTTTAATCCTATG # Right flank : CAAGAAGAAATAACTTTTGAAGATAAAGAAGATTTAATTAATAGATAACAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAATAGATAACAAGATTTGTTTTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:86.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 56-931 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHYS01000004.1 Clostridium botulinum strain 58272-CD map unlocalized plasmid p1BKT015925 contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 56 30 100.0 35 .............................. GATATTGAAAGTGGAAGAGTAATTAAAGTTTGGAC 121 30 100.0 35 .............................. ATTAGTTTACCACACTTTGGACACATTCTCATTAG 186 30 100.0 36 .............................. CCGATAGTGTATTCTTTACCTTCAAATTCTACTTTA 252 30 100.0 34 .............................. ATATAATCTTTTTTATGGAGGTGATACACTTGAT 316 30 100.0 36 .............................. TGTTTAGCTAGGTAGTTTTGATAAACTTTAGTATTC 382 30 100.0 36 .............................. TGAAATTGAGAATAAGCAAAAATCAATTCTTGTAAC 448 30 100.0 35 .............................. TCTGTACTCTCTTCTATAGTCATTTTTAATAGTGT 513 30 100.0 37 .............................. CATTTATATGGTTCTTGCTTGTCCGATTGACTTTATA 580 30 100.0 34 .............................. TCGTAATTGTTAATTATTATTTCAATTTTCTTAT 644 30 100.0 37 .............................. TATAAGTATAGTGATTTTAAAAATATTGATGATCTAG 711 30 100.0 36 .............................. AAAGTAGTTATTTTGAAACTTATAAATACATTAATC 777 30 90.0 30 .......A.......T..........T... TTGCATATGTTAAAATAGAAATAAATGTAG AAAC [801] 841 29 83.3 31 ......CT....T...-...A......... ATATTTAGTTTTAATTCGCAAGGATTAGTAT T [855] 902 30 83.3 0 ..............TT..A....C.....C | ========== ====== ====== ====== ============================== ===================================== ================== 14 30 96.9 35 ATTAATAGATAACAAGATTTGTTTTTAAAT # Left flank : ACAAGATTTGTTTTTAAATGCAAGGGATTATTATAAGAAAAATAAATGTGATATTA # Right flank : CGAAGTTTTAGATTAAGAAAGGAGGATTTTAAAGATGTTTGATTTAAAAATAGATAATATATATGCACATATAAACAAAGAAGCAAAAGAGACTTTATACCAACATTCTATGCTAACCCAATATTATTACAATAAAATAGATAAAACGCATAATTATACCGAAATATTAACAAAAATGATAAATGAAATACTAATAAAAGAAGATAAACAGTCTAAGGAAACCTCAAAATTTATATCGGATCTAATTATAAGAATGCTATATTATCATGATATAGGTAAGATTGGACTGGGATTTCAACAAAATCGAATGGATAACAAGTTAGATGAAAAATATATAGATTACACTTACCATAGTGAATTATCTGCATTGTTGTTTATAGATATAGAATATAATAATATTAAGGAATATACATTCAGTAATAATAGAAAACAAAATAATCAAACAAAAACTTTAATAAAAGATGTTTTATTAAGACTAAGCTTTTTAATAAAATGCCATC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAATAGATAACAAGATTTGTTTTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:86.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 11181-12593 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHYS01000005.1 Clostridium botulinum strain 58272-CD map unlocalized plasmid p1BKT015925 contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 11181 30 100.0 35 .............................. TCCTTGATGAAGTGCATGAATATAAAAATGATAAT 11246 30 100.0 37 .............................. GCTTTGAAAGCTTGTCCCGAATAGCTTGTACACTTAT 11313 30 100.0 36 .............................. GAAACACAGTTTAAAAACAAATTTGGAAGTTGGAAT 11379 30 100.0 35 .............................. AGCTAAAAAGAATGGTGAATACCTTCCTGAAATTA 11444 30 100.0 36 .............................. GAATTAATAAAATTAATACAAGACAATACAATGGAA 11510 30 100.0 37 .............................. AAATTTGCCATATGCGGTCCCCAAAGTACCCATTTAC 11577 30 100.0 36 .............................. AAACCTACATGATGATATATGGAAAGTAGAGCTTAT 11643 30 100.0 36 .............................. AAGTAAGCTTTTCCAGTAACTCCCCTTACTTTTAAT 11709 30 100.0 34 .............................. TTAGTGCCATAGTTTGTACTCCAAATATCTAAAC 11773 30 100.0 37 .............................. ATAAAAATTTAAGATAAATTTAAGGGAAGACACTAAT 11840 30 100.0 36 .............................. TGAAGCAAGAAGAAAGAAGCGAATTTATAAAAGAGT 11906 30 100.0 36 .............................. TTTGCTTGTCTTTGTTTTTCTCTAACATACTCCTGT 11972 30 100.0 35 .............................. TCTATTAAAGATTTTAAAGCAAGATTTTCGCTTAT 12037 30 100.0 36 .............................. AGGTAAAGAACAAGACGATGAGGGATATTTTAGAGA 12103 30 100.0 36 .............................. TTTGTAACTGTAAAATCATTTAACTTTTTAATATCT 12169 30 100.0 36 .............................. TGTGATAGAGTAGCATTTAAATATAAGGTTCTAGGT 12235 30 100.0 35 .............................. ACATCTAATATAGTAATAGTCTTTTCTTTATCGTT 12300 30 100.0 37 .............................. AGAATTACGAAGACAGTATGAGAATGCTAGAGAACTT 12367 30 96.7 36 ..................G........... TTTGACAAGCCTGTTTTTTTATCCATTTTTGACATT 12433 30 96.7 36 ............T................. GAAATCGGTTGTCCTTTTGTATAATCTCTTAATCCA 12499 30 100.0 35 .............................. TTTTGTTTTGTTCAGTATCTTTTTTTGGAGTTCCT 12564 30 90.0 0 ...............T.T...........C | ========== ====== ====== ====== ============================== ===================================== ================== 22 30 99.2 36 ATTAATAAATAACATAAGATGTTTTTAAAT # Left flank : TATTATATTTTTTTTAAAAGTTGTATTAACAAAACTATATTTGTTATAAATAGGAAAATACATAAGGAAAATGGCAAGGTAACTGCCAAGCTTTAGCTTGTGCAGAGTATTTAGATATAAAATAGCTAAGAAGTATAAAGAGTCTAGTAAAGAAAATAAAATAAAAGTAGGACAAACAGTGTGTTTTTGTAGAGAATAAGGCTTTAAAATATGCATTTTATCAACTTATAAAATGTTAAGTGAAATTTATAACATGAACAATTCAAATAAAATAAAGGATAATGTTCTATATATGATATATTAATATAAACAATAGATAGAATTTCCCCAACCAATTTTGTATAACAACATTAGTAAAACATTGATTATATAAGGGTTTAAATAAGATTTAAGTAGAGTAAAGTTATTTGTTAGAATCGGTTGGGAAAATTCTAGTTGAAATATTGGTATATAAGGGTTATCATATAAATATGAACAATAAGAATGGCATAAATACTATG # Right flank : CCGCAAAGTTAAAGATTAATATATGTAAAGAACTACTTTATAGTAAGGTAGTTCTTTTTTTATTGCGGAGAAATAGGTTGGTTGTTAAATAAAGTCAAGCAAATCTTGAATAGTAATAGTACTATCTAATTCATAAAACGCCCTATATATACTTTCTATATCATCTACATTTATTCTCTTAATTGTTTCATAATAATAATTTTGAACTGTGGCAGGGCGAATTCCTGTAACATCACATAGCCATTTTTGATTCTTTTTATATTTACCCAATAAATCAGATACTTTGATTTTCAATTTCAACAATATCATCCTCCTTATATGTATATTATAAACTATGAAAGTTGTTTATTCAAACAGAAATGAAATAATACTACTTATATAGTTGACATACTACTATAAGAGTAGTATTATATATTCATAAGGTAAATGAAACCAACAAATTCAAAAATAAATAGGAGGTTTTAATTATGGAAATCAAAACAATTTATCTAATAATTCAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAATAAATAACATAAGATGTTTTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:90.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 21033-21748 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHYS01000068.1 Clostridium botulinum strain 58272-CD contig_68, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================================================================================================================================== ================== 21033 28 79.3 194 A......A.........-..AC.....T. TATTGATTTTGCAGTGAACCTCTAGTAGTGTTTTTGCTAAATAATTAAAACAAGCTTGTAAACTACTTATATCAACGTTTGTATAGATTTACTATAAAAAATGGCTCACTGCAAAATTTAGTGATTTTATGTTAAAAAGGTTATAAAGGATATGAAGTTATATAGTATTATGAAGATAATAGAAGGAAAATGGG T,A [21035,21043] 21257 29 100.0 38 ............................. TTGGAGATAAAGTAAGAATAGCATTAAGTGGTAATAAA 21324 29 100.0 37 ............................. TCAGAAGGTGTTATAGAAATAGGTGATAATAATTTTG 21390 29 100.0 40 ............................. GTATCTAAATCAATGTTAGATTTGGGACCAGAATGGTTAG 21459 29 100.0 36 ............................. CTGTCTTTTATATCACCGTTATTATTAAAAGTAATT 21524 29 100.0 36 ............................. TGCACCTTCTAGCAACTTGCTGAGTTGACCCTGAGC 21589 29 100.0 36 ............................. ATAGCGGAAGTAACGATTGTCATTCCAACTGTTTTA 21654 29 100.0 37 ............................. TACCTTTACACAACCAGAATTTTTATTAAATTTAAAC 21720 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================================================================================================================================================================================== ================== 9 29 97.7 57 GTATTAATAGAACTATGTTAGTTATAAAG # Left flank : TATTCTGATATGCTAGTTGGTTTAGGTAATCTTAATATAAATGAAACTGCTAAATTCAATATTAGTGATGAGGCTACAGAATTTAGAGATTATTCTATAAAAGAAGCTGAGGTTTTAGGTGTTGAAGAGGAGCTTTCAAAAGAAGATAAATTTAATAGAATAAAAACTGCTCTACAAGGATTGCAATATTTAAGTCTAAAATCTAACCAATCAAATTATTTAACAGATACTATGCCTAAAGTTGTTATATTGGGTGAATACAAATGGGGAAATAATGTATTTCAAGGATTGATAAATAAAGATGGAGTAAATATAAAAGGTCTTGAGGAAGTAATTGAGGAATATGATAATTTTAGAAATAGTAAGATTTGGATAGGCGTTAGTAATAGAATTTTAAATAAAAACTTTGAAAATGTGAAAGAGGATCTTGAAGAAGCATTTAAGGATTGTGATGATGTTGTAATAGGTAGTGTAAAGAATGCTTTTGATGGATATTTAGA # Right flank : TTGTATAAAACTTGGGGATGTAGGTTGATTTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATAGAACTATGTTAGTTATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 50-411 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHYS01000039.1 Clostridium botulinum strain 58272-CD contig_39, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 50 29 100.0 39 ............................. CTTACTTATCTTCTAATTCTATAATTCCCATTAATGCAT 118 29 100.0 38 ............................. TGACATTGCTCCTATCTGGATAATATTATTCTATATAT 185 29 100.0 38 ............................. CACGGACACAATAATTCTACATCTATATAATATATTTC 252 29 100.0 36 ............................. TATTGGGAAATGGCTAATTCGCTATTTCCCATGAAA 317 29 100.0 37 ............................. TATCTAGATTGTGTAGGAGTTCGTACTCTTGGATATG 383 29 89.7 0 .........................T.GT | ========== ====== ====== ====== ============================= ======================================= ================== 6 29 98.3 38 GTATTAATAGAACTATGTTAGTTATAAAG # Left flank : AAATCTATCTATATTCTCTAAAACTTTAATATTTAACATTTTAATTTCCG # Right flank : TAATCGGTGACAGGGTGGTGTACATATGAGAATTATAACTTGGAATTGTAATGGTGCTTTTAGAAGAAAATCAGCACCAGACACTTGTCAAAATATTGTTCTTCGTTTCGCCATATTTCGGGCGGTGCCTGGCACCGAGAAGATATAATATAATTAGATCATGTTGATATTATTATAGAATTAGATAGGAGAGTTTATGATATGAATTATGAAAATAGTGAGCAAATTGAACAAATACCTGTTTTAATCCAGAAATTATATTCAATAGTAAATGAACTAGAAACATCTTTTAAAGGTAGAAAATTTACTCTTGATGGACATTTAGTTGGAAGCATAGGGGAGGTATTGGTGTCTTATTATTATGATTTAGAATTATTGCCTAATTCAACAAAAACACATGATGCTAAGACAAAGGATAATAAATTAGTTCAAATAAAAGCCACTCAAGGCAAATCTATAGGAATTAGTAGCAAACCTAATTATCTTATTGTTATTAAAAT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATAGAACTATGTTAGTTATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 3363-5236 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHYS01000039.1 Clostridium botulinum strain 58272-CD contig_39, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 3363 29 100.0 38 ............................. AATTTAACTGCATTTTCTAAAATGCTTATTCCTTCTAT 3430 29 100.0 36 ............................. TTAGGTACTTGAAGTTTATATATTTTTATTTTTTTC 3495 29 100.0 38 ............................. CTTCAGATTTTCCATCTATGCATATACTAACGTGCTTG 3562 29 100.0 36 ............................. TTTCCATATTGCTTAGATAAATAAACTCTTTCATCT 3627 29 100.0 35 ............................. TGTTGGCAGCTGCTAATTTATACTCACGTCTGAAT 3691 29 100.0 37 ............................. TTAAAAAGAGTATTAAATTCATCTTCAAAATAAAACC 3757 29 100.0 36 ............................. TATATGAGAAAACTTGTAAGTGGTGAATATATGTTG 3822 29 100.0 38 ............................. CTTAAATTACCATGCTCAATCAAACTCATGGTTGCTTG 3889 29 100.0 36 ............................. TTTCAGCAATCTTCTAAAATTAAGCAATCTTTTAAC 3954 29 100.0 36 ............................. ACATTGTTTTAATTTTGTGTCACTCTATTATAATCT 4019 29 100.0 40 ............................. CCAATTGAGCGAATATCACTCTTAGGATAGTTCAGTATTG 4088 29 100.0 37 ............................. GGTCAAGGAAAGACTTATAACATGACACGTCTTGCAC 4154 29 100.0 36 ............................. TGAAATAATCTTTAGCCATACCAGCTATCATCTTGC 4219 29 100.0 36 ............................. AACTAATCGATTGATACGGATGTGTTATTTTTTTGT 4284 29 100.0 37 ............................. TATGGAACTAAATCGGAAGGTAGTCAAAAATATATAG 4350 29 100.0 37 ............................. GCCTACGAAAGTAAAAAAGATGAAGCAAAAGAAATTA 4416 29 100.0 37 ............................. CCAGAGACTATTGACTTTATTTGTTCCAAGTAATCTG 4482 29 100.0 37 ............................. AAAGATAGAGTATTCAGACCAATACCACTTCCTTGAA 4548 29 100.0 37 ............................. GTTGAAATAGCATTTGGATTTGTAGCAGCTAAATCAC 4614 29 100.0 36 ............................. TATTTAACAGAGGAAGAACAACATTTTTTAAACTAT 4679 29 100.0 38 ............................. ACTTGATGTCCAGCTCCACCTAGTCGCATACCCATTGC 4746 29 100.0 37 ............................. TCTTTTAAATCTAATTTTCTATCTACTACTATAATCC 4812 29 100.0 38 ............................. TAAATTTAAATGTTTAACTAAAAAATTATTCAATGCGG 4879 29 100.0 37 ............................. GCAACACTAGCTAATAATAAAGACTTTAAAACTGCAT 4945 29 100.0 36 ............................. GAAAAAAATACAAACTTATAGGTGATAAGCTTCAAA 5010 29 100.0 37 ............................. GGTATAGAAACTGTTTTAAAGATCAAAAAAGCCCTCA 5076 29 100.0 38 ............................. GACTATTGAAATAACTTAGAGGCTCTGTATCAAGCTGA 5143 29 100.0 36 ............................. CCAGAAATGAAATTGTTACATTTATCAATTAAAGAA 5208 29 96.6 0 ................C............ | ========== ====== ====== ====== ============================= ======================================== ================== 29 29 99.9 37 GTATTAATAGAACTATGTTAGTTATAAAT # Left flank : ATCAATATAAGAAACAAATAAATGATATAATTAACAATATTAGAGTTGGATATTACAATGAAAATGCTTGTGAGGAAATGTTGAGTAATGATAACTCTGTTCAAATGATACCTGTTAGTTTGCTAAGTGAATATATTAAATCGAGAGAAGAAAAACGATATATAGAAGGTAATGAGTTGTTTGTGAATTCAAAAAAATATTTATCAGAATATAATAAAAATCTTAGAATTTATATAACAGATCGTGTTTATGATATTAGAGGACTAGTTGAAAAAGAAATAGATATAGATAATCAAATGGTTTAATAATTTTATTTGCAGTGAACCTTCAGTAGTGTTTTTTGTATTTTTTGAAAAAGTGCTTTAAGTATATATATATCAACGATTGTAAAGAGTTATTGCAAAAAATAGCTCACTGCAAAATTGTATGATTTCTTTTCAAATTTTAAGTGTAAAATATGGAGTTGTATAGTAAAACAAAGATATTAAAAGAAAAATGGG # Right flank : TCATAGAAAAACCTTCTTGTAATATTTTTAGTTCTGTTAAGTTATATGAACATTGATTCCTCTCAACCTATTGAAATATAATAGATTTTTCACAAATATATTACCTCCCAGAAAGGAGAGAGAAATCAATGAACAAAGCTAATAAAGAAATCATTTGTTCTGGTTGTTGCAGCCATAATCTTTTTAGGTTTGGAAAAGACAAAGAAGGAATAATCACTTTCTTACATTCCCATAGTAGCACATATATATATTCACGACTTTAGTTCAATAATTAATTACTAAACATTTATTATAAGTATCATTGGTATTGTAACTTAATAGGTCATATAACAAAGATATATATTAATATATCTTGAATATATATTAATATATTGGTAAATAAAGGAGAGAAGATATGAGGAAAGTAACGAATATATTGACATCATTAAGTTTGTTTATTTTTTCCATATTAATTTTAATAGATTTTATGATTATAGGGAGTGATATTCCAGTTAACATTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATAGAACTATGTTAGTTATAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 3 6348-6704 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHYS01000039.1 Clostridium botulinum strain 58272-CD contig_39, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 6348 30 100.0 35 .............................. TCAGCTTTATTTTCCACCTCGGTTATCTTTTTGCC 6413 30 100.0 36 .............................. AAGCCTTGTTTAATTAGTTCAACCACTCTTGCTTTA 6479 30 100.0 36 .............................. CCGATAACAAATATTTTCGGTGAAAACGGAAGCGGA 6545 30 100.0 36 .............................. GCCATTTCCATTAGGTCTAAAATTTCACCTTTATGA 6611 30 96.7 34 ...............T.............. CAAAAGCTAGATGCTATAGGCAAAAAGTTTGAAA 6675 30 96.7 0 ...................C.......... | ========== ====== ====== ====== ============================== ==================================== ================== 6 30 98.9 36 GTTGAACATTAACATGAGATGTATTTAAAT # Left flank : AACATTTGTTAGTTTCATTTGGCTTATGTTGTTAATAGACGAGCTTACATATAGCTATCATATATACTGTAGAATAAGTGAAATTATAGGACTTACTTCACAAATATATATTTTAATAAAATATATCAAAAAGGTATATATAATATAAAATATATGGTGTAATTTATATTATGTATAAAATGAGGTATATTAATTTTCGTATTATTAGTTTGTATGCTTATAGGAAGTAGTGTTCTTGTTTTATTTAATCCTTTTAGAAAATTTATAAGTATTTTTTTTGGATTTATTTCGTTACTTTTTTCTTTATCCCAAACAAATAAAAAATAAGCCATAGTAAAGAAAAATCTTTACTATGGCTTATTTTAATTAAACGAAAATTATAATCACAACAATATGATTTTCTTAATAGAAATAAACATTCACTCAGTTTTAGTTTCACATTAATTGTGAATTCGACAAGTGCCTGGCACCAATTACTATTACGTGTTTGCGTTCAATTG # Right flank : TTTGAATGTGATTTCTATTAATCCCAACCAAGTATTTCTTTTCTAAATCACTCTAATATTATCCCAAACAAATATAAAATAAGCCATAGTAAAGAAAAATCTTTACCATGGCTTATTTTAATCAGTGTTAGTTTCACATTAATTGTGAGGATAAAAAAATGTATAGCCTATATGCATGACTATAAAAAAACTAAAAAACATAATTACATTTAAAAGTGCAAGTAATATTCCTAGTTTCCAATTATATTTAATTAACGTAATTAAAGAAAAAATAAATCCTATAGGACTAACTAAAACTGAAAGCATCCATAAAGGAGTGAGAATGGAACAGAAAGTGGGTATCCATCCTACAATACTTATCAATATACATGAAATTGAAACTATTTTACAAATTTTAAAAAATGTATCATTTGATATTTTAAACATAATTTTCCTCCTAAACTTAATAGTTATTAAGTTTCTTTTGAAAATAATAACTTTTTTCCGAATTAATGTAATTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //