Array 1 493115-494042 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSVS01000001.1 Pseudomonas aeruginosa strain AMT0006-1 IPC544_1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 493115 28 100.0 32 ............................ CTAATGTCCGCCCTAGCCTCACAGCGACGCGA 493175 28 100.0 32 ............................ TTCGTCAAATCCAAGTGAGGCGGGTAAGGTTT 493235 28 100.0 32 ............................ TTGATGCCAACGATGGCCCAACGCTTGTCCCC 493295 28 100.0 32 ............................ TGGCCGTCGCTGCGCTGCTGGCCGCTGTGTAT 493355 28 100.0 32 ............................ TCCCATAGACTTGCCGATCTCGGCTGCGGCGC 493415 28 100.0 32 ............................ TTGACCAGATCGCGGCGTGGGGTGGTCGGCTT 493475 28 100.0 32 ............................ TGCCCGCCATCAGCGAAACCGAACATGCTTGT 493535 28 100.0 32 ............................ AGTGGGCCGTCCCACTCAGTGAAGAACGCCCC 493595 28 100.0 32 ............................ GCTGTGCGTCGCCGTGGTCTGACGGTCGAATC 493655 28 100.0 32 ............................ AGCAGATACCCGAACCACTGGAGGTACATGCA 493715 28 100.0 32 ............................ TTCATCAGGATGCCGCCAAGGGTCCGCATAAT 493775 28 100.0 32 ............................ ATGAAGGCCAGCAGGCCGAACACGATTGCGAT 493835 28 100.0 32 ............................ TGGAGAAAAGCAATGCGAGTGGTGCGAGGCCA 493895 28 96.4 32 ....................T....... AGACAATCCGGACCTGCCGCCCAGGACGATCT 493955 28 100.0 32 ............................ TGCAGCGACTGCACCTTGGCTTGCTGCCGGTC 494015 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 16 28 99.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCGACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCCTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGACCCCCCTCACTGCCGTGTAGCTAAGAAATCGCGAGCGATATAGTCCCGTAGGGCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 37734-39141 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSVS01000016.1 Pseudomonas aeruginosa strain AMT0006-1 IPC544_16.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 37734 28 100.0 32 ............................ TCACAGCGACGCGAAAACGACGGTAGCAAACA 37794 28 100.0 32 ............................ AGCCACAACGGCGAGGCGCTAACAAGGATCGA 37854 28 100.0 32 ............................ TGCCGCAGCGCCTGGCCCAGCCCGCCATGGTG 37914 28 100.0 32 ............................ TGGGTGCGTCCACGCAGCAACTGGAAGATCTC 37974 28 100.0 32 ............................ ACGTCTGAAACGACTTCACCGGGACGAAGCGG 38034 28 100.0 32 ............................ CCACCATGTCGGCGGTGATCGTCACCGGCACC 38094 28 100.0 32 ............................ AACTGGTCGTGGCGCGGGATCACCGACCGACG 38154 28 100.0 32 ............................ AGATCACCGAGCGCTATTCGGAGCCGGCCGAA 38214 28 100.0 32 ............................ TCTTCGCGTCCCTGGCCTTGGCTCGATACAGA 38274 28 100.0 32 ............................ ACCGAATCCGCGACTCGTACCGAGTCGCAAAC 38334 28 100.0 32 ............................ GGGTGGCGGAACCGACTGCCGAATATCACTCC 38394 28 100.0 32 ............................ GGCAAGCCGTTGATCAGCAGGCCGGTATTCGG 38454 28 100.0 32 ............................ TATGCCGCCCAGCGTGCCGCCCAGGGCGCCGC 38514 28 100.0 32 ............................ ACGAACAGCGCTGCGAACTCGCCAAGGTCTGG 38574 28 100.0 32 ............................ TATCGAAGAGTGATCTGCGCTGCTGTGGCGCA 38634 28 100.0 32 ............................ ATGGTGCTGTGGGAGCGTGGCAGCGAGTCGCT 38694 28 100.0 32 ............................ ATAGAGGATCAGATAGCGCCCGACATGCCCGG 38754 28 100.0 32 ............................ TCGTAATCATTGAAGCCCCGGGCAAGCTGAAA 38814 28 100.0 32 ............................ ATGGGGTCTACATCAGCGATGCGGCTCTGTCC 38874 28 100.0 32 ............................ ACTTGCAGAAGCCCCAGGACTTGAAGCCACTG 38934 28 96.4 32 C........................... ATCCGTCACCGGAATTTGCGCGTTGGCCGTGC 38994 28 100.0 32 ............................ TTACCTTTAAAAGGCTTTAAAAGGCCTTTTAG 39054 28 92.9 32 .....................A..A... TGTCTCGAAGTTCATAAGCGGGCTTCGGGCGA 39114 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 24 28 98.5 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAACTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 49006-47656 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSVS01000016.1 Pseudomonas aeruginosa strain AMT0006-1 IPC544_16.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 49005 28 100.0 33 ............................ TGGCTGTACGCCGCGGATGAGCAGTATCTGTAC 48944 28 100.0 32 ............................ GATCCGGGTGATGGCGGCGACGACCCGAACAA 48884 28 100.0 32 ............................ TGAAGGCAGTGATCTTGATCTGACTACGGGTG 48824 28 100.0 32 ............................ AGGAGCTGGCGGGCGTCATCTGCGGCGATGGT 48764 28 100.0 32 ............................ TGGGCCAGGCGTTCTCGGTCGGGTTCGGTCTT 48704 28 100.0 32 ............................ ACCAAGGCAGCGCCCACTGCAACGGCGGAACC 48644 28 100.0 32 ............................ TGCTGGTAGGCGCCGGCGAAACGCAGCATCAC 48584 28 100.0 32 ............................ TGATAAGTTCGACGGGCCGTTTACGCTGAGAG 48524 28 100.0 32 ............................ AACGTGACGGCTCCCGCGATTCCGGTCGTGCC 48464 28 100.0 32 ............................ ATGCAGATCAAGCCGGAGGACTACCTCAAGAC 48404 28 100.0 32 ............................ ATCGACGCCAGCACCTGGCAGCACGACTTCAC 48344 28 100.0 32 ............................ AACGTGACGGCTCCCGCGATTCCGGTCGTGCC 48284 28 100.0 32 ............................ ATGCAGATCAAGCCGGAGGACTACCTCAAGAC 48224 28 100.0 32 ............................ ATCGACGCCAGCACCTGGCAGCACGACTTCAC 48164 28 100.0 32 ............................ TCCATGTCGCTCGGGCCAGTGACGGTCATGAT 48104 28 100.0 32 ............................ ATGTAGTAGCGGTAGCCCATCGTTTGCGCTTT 48044 28 100.0 33 ............................ AACACAGATCGGCGTGCCCGTGCGAAGAATGCC 47983 28 100.0 32 ............................ TACATGGACCAGATCGAGCTGCCGCCGCCGCC 47923 28 100.0 32 ............................ TACGTGCGGTTCTGCGCCGCGCCGGATGACGA 47863 28 100.0 32 ............................ TTACAGATCGGGTGCTCTTCCATGGTGAACCT 47803 28 100.0 32 ............................ AGGGAGGGACTGCGTTGCGGGCCTGCTATGAC 47743 28 100.0 32 ............................ TCCGGCACCGTTCATCTCCTCCTCGCTCCAGA 47683 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 23 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTGGTAGGCTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //