Array 1 157989-158749 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_QEJI01000002.1 Staphylococcus pseudintermedius strain ST547 1 K40_S38_L001_R2_001-1_contig_3, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                	Insertion/Deletion
==========	======	======	======	====================================	===============================	==================
    157989	    36	 100.0	    29	....................................	ATTAGAAATGTTAGTCCCTAAGTTACAGA  	
    158054	    36	 100.0	    30	....................................	TGCAGGAATCGGTTTTGTCCTGTATGCGCG 	
    158120	    36	 100.0	    30	....................................	TATTTAAATTACGTTTCGCACGTTCAATCT 	
    158186	    36	 100.0	    29	....................................	CATTAACTGCTTTGTCAAACTCACTAATT  	
    158251	    36	 100.0	    30	....................................	GGAAAATGTGGTAATGAAGGAGGATTTTGA 	
    158317	    36	 100.0	    30	....................................	AGAGAAGAAATTGTGGCAATACGGTATTGT 	
    158383	    36	 100.0	    31	....................................	CGTCGATTTCGACATAATCAATCGCCTTATG	
    158450	    36	 100.0	    29	....................................	AATATAAAAGGCGCTAAGAGGCGTTATAT  	
    158515	    36	 100.0	    30	....................................	TGAGCCTTTATCATTTAGAACAGCTAGAGT 	
    158581	    36	  97.2	    30	............................A.......	TTTCCTTCGTGATTTCTTCTTCTACTTCGA 	
    158647	    36	  97.2	    30	............................A.......	CGAAAGTAAAGATAGTATGCAAGGTGCAAG 	
    158713	    35	  88.9	     0	..........................-.CA.C....	|                              	TC [158746]
==========	======	======	======	====================================	===============================	==================
        12	    36	  98.6	    30	GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	                               	       

# Left flank :   TTTTAATTATATTATTTCCGGAATCACATCTTGGCATACACGATATTAAAAAGTTTATACACCTTATAAAGAGATATAAATTTACCACGATTATTTTTACTAATCATCCTTCTATCATTATTAACGAGGAAAACATATTTCTTTGTAAAAGTAATAAGAAGTGCCACGACATCGAAAAAATATATGAAGAATTAATGTTATTTGTTCCTGAAGAAGTAGTGAGTCATCAATTAGTTAACATGATTGCATATCACGAATTCGTTGGTGAAAACCTTTCCGAGTATGAGCGATATTTTAAGTTTATCAATCATTACAATTAGGCTATACTATATTTAACATTATATGATAGAGAAAAGTTGATCCAACGATGAAGTAATGACTATGTGACTTCATTCGTGATGAAGAGGGTTAACTTTATCATCGAGTATCATATCTGACTTCTTTTAATAGTGCCAAGCCTCAATTTTGAAAAGGATTGAGTTAATGTTTTTGGATTTGAG
# Right flank :  CCTTCTTTATAATCGTACATCAACCTCACTATGCTTTCAAAATAATTAAGAGGCATTGTGGGCTTTTTGTGTTTATACGAAATGTTGTATGAATCTCTCAATCGTGCCACCATGTTATAATAGGTATAAATTGTTCATAAAAGATAAATAGAAAGTAGGGGAAATCTATGGTAGCAATTATTGCAACTCAACCGTTCCAATTAGCAGAAGGTCAAAAGTTTGAAAAAGTATCGCGTGAGCTCCCAACACCAGAGGCACATGATATTTTAATCAAAGTGTACGCAACAGGGATCAATCCGGTTGATACGAAAATGCGGCAAGCCCCGTTAAATGCTGAGGCACGTGTCCTAGGTTTTGATGCGGCAGGTGTGGTTGAAGCGGTCGGCGATGCGGTTACGGATTTCAAACCGGGTGACCGAATATATTATTCAGGATCGAATCAACGAGATGGCTCAAATCAGACGTATCAGCTCGTGAATGAAAATTATTTAGCGCATATG

# Questionable array : NO	 Score: 6.19
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:72.22%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-0.20,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [0-6] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.91,0   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
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