Array 1 83168-82587 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMCA01000017.1 Streptomyces sp. DpondAA-D4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 83167 29 100.0 32 ............................. CTTGGTGGGGCGTCCGTCCTCGACATCCTCGC 83106 29 100.0 32 ............................. CAGAGGTGACACCAACGGGCGTCGGCCGACGG 83045 29 89.7 32 ....T.....T..............C... GCCACCGGCGGCTACCACTTGGTGCTGCGCGC 82984 29 96.6 32 ....T........................ CTGACGACGATGGGCAAGGCCCTGGGTAACGG 82923 29 93.1 32 ................T........A... GTGCCGAGGTCCATCACGATCGCCGGAAGCCG T [82919] 82861 29 82.8 32 G...TT.....A........A........ GACTGCATCGGTAAAACTGGCCGCCTGGCCGG 82800 29 86.2 32 ....TT.....A.............A... CAGAATGTGAAGACGCTGCCGTAGCCGGTGGC 82739 29 79.3 32 ....T.......T.T......G.CA.... GCTATGTAGGGGACGCCTCGGCGGTATGTGGC 82678 29 82.8 32 ...TT..T.....GT.............. GTGGCGGCGGCTCCGTCGAGCAGGAGCTCGCG 82617 29 82.8 0 T...T.......T.......A.....G.. | G,G [82591,82604] ========== ====== ====== ====== ============================= ================================ ================== 10 29 89.3 32 CTGCCCCCCGCGCACGCGGGGATGGTCCC # Left flank : CGCATGACGTACAAGTGCCGGCTGAGTGCCGTGGCGAACTGCCTGGCATCCCGGTGCAGTTGTGTGTAATAGCTCCGACGTACCTCACGATTCTCGCGAGCTTCCTGGATGGCATGGGCCATCTCCAACTCGCGCTTCTTGGTGCGGTCGGCGCCCCGCTGGGTAAGCAACGCGCCCCCAAGCGTTCCCGCTACACCAGTGATCGCAATGAGTACCGCCCCCAGGTCCATTCGATCAGCCTAGACCGCGTCATTTGGCTAGCCGGATAAGGGCGGCGATGACTGCTCGCCGCCTGAGTCGCTGCGAGTGCTGATCCGAACGGAAGGCTCTAATTCTGGCTATGGGGGTTCCTGCATGGCCGGTGGTCAACGGGGCAGCCCTTAGGCTGGCCCCCGAGGTAAGGAAGGTTCGTCCGCGTTGAGTCTTTGCGTGTAATGCCGGAGTCGGCGAAAGTGCTTCAGAATGACCGACTGCGCCGGTAAACTCGCTGGTCGCGGAGT # Right flank : GTGTCCAGTTGAGGCAGGTGTAGTCATTGGTGCGGGGGTGTCGCCCGCGGTGTCGGCGCGCCCGCCTGCCGCAACTCGTATCCGTATTGCGGCAATTCGAGAAGATCACCTACAACTGTGCTTATGAGCCGAAGAGTTGCAACATCTGAGCAGGGCGCCCAGTTCGAACTTCGTTGGGGTGGGGTCCACGTGACCGTCCAGCGCGTTCCCGCGTGGCTGATCACCTTGGTGACCACGGCCGGGAGTGCTGCGGTCGCCTGCTGGGTGGGTCGCTGACGGGCGACTCCGACCTCGGGTTCCCGGCCGGCCGGAATGCGCGACCCGAGGCCGAACCCTGGCCCATGGGTGAAGCGCATGCGCGTGAGAACTTCCCGCGTGGTGTGCGCGGCGGGCGGTGTCAGCGGGCATGTCCGGGATTCACGCCCGGTCACGCCGGACGGCCAGGCTCCGTGGTCGCGTTCAGGCCGGTCAGGAGCAGGTCGAGGCCGGTGGTGAACTGG # Questionable array : NO Score: 5.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.46, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.36, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCCCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [18-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 88005-87670 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMCA01000017.1 Streptomyces sp. DpondAA-D4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 88004 30 93.3 31 ............................GC GCTGTTCGCGGACTCGGCGGCCGCGACCATC 87943 30 96.7 31 .............................T ACGAACGCGCCGTACAACTGGAGCCGGACGG 87882 30 100.0 31 .............................. AGCTCATCGACATCGACATGGAAGTCGACTT 87821 28 93.3 31 ................--............ CGACCGACCCGGTGGGTACGGCGATGACCGA 87762 30 93.3 31 .........C...................G CCACGTGATCTAGTACGGCAGAGTTACATAC GG [87740] 87699 30 83.3 0 .....................G....TGTG | ========== ====== ====== ====== ============================== =============================== ================== 6 30 93.3 31 CTGCTCCCCGCGCGCGCGGGGATGGCCCCA # Left flank : GCTACAGCGAGACCTTCCGCGGCTGCTCCCCGCGCACGCGGGGGTTGCCGTGCCCACACCGAGGAAGTTGGAGCATCCTGGAACCGTGGCCGAGTTCGCCTTGGCGCTTGACCACTTGCAAGGTTTTGCGCTCTCGCCCCAGGCGCCTGCCGACCTGATCCGCTCCGTCATCGAGGAGAAGTACTGTGACCCCTGACTTCCGTCCCGGGCTCGGCGCCGTCGCCTGGCGCAGGTCCAGCTACAGCAACACGCAGGGCGGCGACTGCGTCGAGGTCGCTGACGGATTTCCCGGCGTGCTCCCGGTCCGAGACAGCAAGCGCCCCCACGGACCGGTGCTCCTGTTCGGGGTGCCGGCCTGGTCCGCTTTCGTCAACGAGGTGAAGGCAGACCGTTCTGCCTATGGAAGGCTCGCCAGATTGGGTATTTTGCGTGCAATGCCGGAGTCGGTGAAAGTGCCTCAGAATTGCCGATCGCGCTGCTAAACCCCCTGGTCACGCAGT # Right flank : CCAGTACCGAAACGGATAAGCGAGGTCCGCGACAGTAGGCGACCCACGACCCCGCGCTCGTGTTCGCGGCCCGGCCTGGTCTGCCTTCGTCAACGAGTTGGAGGCGAACCTTCCCACCTAAGAAAACGAGGTGCCGGGCGTGTGAGCGTTCAGCATCCTGGGACGCATGAACGTCCAGGTGACAATGCCCCGTTACGAGATCCGCGCCCAGCACACCGCCTCGACGGTCACCGTGTATCAGGCGTACTCGCCCGCCATCGGGCTGCCCGCCGTACGGGACGGTCGATTCCCGGCAGCCTGGAAGCGGGACCGGATGACCTGGGTCAAACCCAGCTTCCTGTGGATGATGTACCGCTGTGGGTGGGGTACGAAGGAGGGGCAGGAGGTCGTGCTTGCCGTCGAGGTTGAGCGGGCGGGACTCGCCTGGGCGCTGGAGCACGCGGAGCTGTCCCATTATGTGCGTGACGTCCACGCGGACGAGGCAACCTGGAAGCGGAGCC # Questionable array : NO Score: 3.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCGCGCGGGGATGGCCCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGTGCGCGGGGATGGACCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 88849-88454 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMCA01000017.1 Streptomyces sp. DpondAA-D4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 88848 30 100.0 31 .............................. TCTCAGGGGGTGGGAGGCGTGGTCCGAGCGT 88787 30 96.7 31 .............................C GTCGGCCGTACTCAGTGGCGCGACGCCGGTG 88726 30 93.3 31 ............................GG CGGACGGGTGGGGCAAGGCGCTGATTGGCGC 88665 30 96.7 31 .............................G TCGCGTTCCTTGTTGAACACCGGGCTGGGGG 88604 30 100.0 31 .............................. GCGATAAACCCAAAGACAGGGCTGAGGACGG 88543 30 93.3 31 ............................TG GCACCTACAGCTACAGCGAGACCTTCCGCGG 88482 29 80.0 0 .T...................G.T.-..GT | ========== ====== ====== ====== ============================== =============================== ================== 7 30 94.3 31 CCGCTCCCCGCGCACGCGGGGATGGTCCCA # Left flank : GGCCACGTTGTTGTCGTTACTCGACCGGCCGGATGTCGCCTACCTGGAGAGTTCGTACGCTGGTGAACTGGTTGAGCATGCTCCGGCAGTGGCTGAACGGCCCTAGCATTTGACTACTTGCAGGCTCTCGCGCTCCCGCCAGAGGAGTCGGCCGACCTGATCCGTTCCGCAGCAAAGGAAAGTTATCGTGACCGACCTGTCCCGAGCCGCTCTCAGCGCCGCCGCCTGGCGCAGGTCCAGTCGCAGCAATCAGGCGGGCGGCGACTGCGTCGAGGTCGCTGACGGATTCCCCGGCGTGCTTCCGGTCCGCGACAGCAAGCGCCCGCAGGGGCCGGCGCTCGTGTTCGGGGCGCCGGCCTGGTCTGCCTTCGTCAACGAGGTGAAGGCGGACCGTTCCGCGTAAGGTAGCTAGCCAGGTTGGGTTTTTGCGTGCAATGCCGGAGTCGGTGAAAGTGCTTCAGAATGACCGATCGCGCTGCTAAACCCCCTGGTCACGCAGT # Right flank : GCCCACACCGAGGAAGTTGGAGCATCCTGGAACCGTGGCCGAGTTCGCCTTGGCGCTTGACCACTTGCAAGGTTTTGCGCTCTCGCCCCAGGCGCCTGCCGACCTGATCCGCTCCGTCATCGAGGAGAAGTACTGTGACCCCTGACTTCCGTCCCGGGCTCGGCGCCGTCGCCTGGCGCAGGTCCAGCTACAGCAACACGCAGGGCGGCGACTGCGTCGAGGTCGCTGACGGATTTCCCGGCGTGCTCCCGGTCCGAGACAGCAAGCGCCCCCACGGACCGGTGCTCCTGTTCGGGGTGCCGGCCTGGTCCGCTTTCGTCAACGAGGTGAAGGCAGACCGTTCTGCCTATGGAAGGCTCGCCAGATTGGGTATTTTGCGTGCAATGCCGGAGTCGGTGAAAGTGCCTCAGAATTGCCGATCGCGCTGCTAAACCCCCTGGTCACGCAGTCTGCTCCCCGCGCGCGCGGGGATGGCCCGCGCTGTTCGCGGACTCGGCGGC # Questionable array : NO Score: 5.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGCTCCCCGCGCACGCGGGGATGGTCCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 229-47 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMCA01000036.1 Streptomyces sp. DpondAA-D4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 228 37 100.0 35 ..................................... CCATAATGCCGTACGTACGGCATTATGGAGTCATC 156 37 100.0 36 ..................................... TCCGACAGGGATGCGTAGGAGTGGTGGGCGTCCACG 83 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 3 37 100.0 36 GTGGCGGTTGCCCTCCGGGGCGACCGAGGATCGCAAC # Left flank : CCGTCGTCCAGGCCCGCATCCTCGCCCGCCACCTCCGCGGCGACCTACCCTGCTACCTCCCCTGGACGGCAGCGTGACGGACCTCCTTCTGACCTACGACGTCGACACCACCACCCCCGAAGGCCGCCGCAGACTCCGCCGCGTCGCGAAACTCTGCGAAGGCCACGGGCTTCGTGTCCAGAAATCCGTCTTCGAGATCATCGCCAGTGACACCGATCTGCTCAGACTCACCGCGGCGGTGAACGACATCATCAACCCGGACACCGACAGTGTGCGCCTCTACCGACTGCCCTCCGCAGGCCTCGCCGACGTATACACCCTCGGTACGGCCCAGATCGAAGCACACCGTCAGGACTTGGTGCTCTGACTGCTTCGGAACCTCAAGCACACACGCGACACGCAGACCGCACCGAAGCGAAATGTCCTTATTCGATGCTTCGGTCACCCGCCGGCCTTCCCAGCAACAGTTACGGATACGCTGTTCCCGCTGATCAAGCAGT # Right flank : CGTCTTGAACGGCGACGGCATCGTCTGCATCGACCTGGTGGCGGTTG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTTGCCCTCCGGGGCGACCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGCGGTCGCCCTCCGGGGCGACCGAGGATCGCAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-16.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [28.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 8574-9048 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMCA01000036.1 Streptomyces sp. DpondAA-D4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 8574 37 100.0 37 ..................................... ACCTTCGACCTGACCCGGACGTGGATCGACACCGACG 8648 37 100.0 37 ..................................... CGCTCCTCGTCCGTCGCGAGCCGGGACGTCCACAGGT 8722 37 100.0 36 ..................................... TCGGTGTTGGTCGACTGCCACCGCCGACCAACAAGA 8795 36 91.9 37 ........T............A-.............. TGGAATTCCGGTGGTGACCCAAATCTGATGGCCCCGA 8868 37 94.6 35 ........T.............A.............. ACCCGGGCCCAGTACGAGGAGGCCGTCCTGGCCTC 8940 37 94.6 36 ........T.............A.............. CTCCGCCACCTGGTTCACGACTGTGCGGGCGCCGTG 9013 36 75.7 0 ......A.T.......-A....C........G.GCG. | ========== ====== ====== ====== ===================================== ===================================== ================== 7 37 93.8 36 GTGGCGGTCGCCCTCCGGGGCGGCCGAGGATCGCAAC # Left flank : AGCAGGCCGTCCTGCCAGGCGCAGCATCCCTTACCGACGTCGTGCACCAGAGCGAGGTACTCCGCGAGTTCCCCAGCCCCGAAAACATCTCCGAACCTATGAGCGAGAACCGCCGATTCACGCAGGTGATCCGTCAGTTCATGCCGCGCCCCCGAGACCGGACTACGACTATGCGCGTATAACTGCCTTGAAGACATAGAAAACCCCTCTTGCCAGCACGAACCTCCCCGATTCGTCTGGTGGGCAGAACCTACACGAGCCCACTGACAGTCAAAGGAAAAGTCAGGTACGAGAGCAAAAGGGCCTGCCGATGTTGCATCATCAGTACCCACGCGTTCCATGTTCGGAGCCGACTGGAAGGCCGCCCGCAAATTCGGAACCCCAAGCACACACGTGACACGCAGATCACACCCAAGGGAAATGTCCATAATCTCCCATTTGCCTTGGCGCTCACTAGAAACGCCCACTTGGACCTGGGGTGAATGCGCTGGTCAGCCAGC # Right flank : CGGCCCCTTTGGTGGGCCCGCGCCCACGGTGTCCGGCGATGATCTCGGCCGCACTCTTCGCGTCCTCCCAGCACACACTTCGGCCGCAGATGAAACGGCTGTATCACGGTCCAGGAAGCAGGGGGCTTGGGCTTCGCGTCCGGCCTTACCACTGCACTCAACCTTCGATGCGATAAGTCACCGTGCGGCGATCCGTACCGGCTACGGGTGAAGTGCTCCTGGGAGTGCTTACGCAGGGAAAGGGTCGGCTGCAGGAGGCACTGTGGAAGCTCACAACCCGCATGGGGCCATTCGTTGACGTCATCGGTGCCCTCTCCGGTGGCCGGACGCCTTCGGACGACGTAACACCAGCGAGGACAGACCAACCAGCCGCACATGCTCTGATCAGGCAGAACGTCACTTGGCAGCACGACCGGGCACCAGGCAACACGAATCCTCACGGTCTCGTAGTGCGTAGGCCCGGGGTCCGAGTCGCCAGGGATTTTTCAGGGACTCTCAGC # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCTCCGGGGCGGCCGAGGATCGCAAC # Alternate repeat : GTGGCGGTTGCCCTCCGGGGCGACCGAGGATCGCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGCGGTCGCCCTCCGGGGTGGCCGAGGATCGCAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-18.40,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-23] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //