Array 1 100032-97600 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNPD010000001.1 Ruminococcus bicirculans strain 1001136B_160425_B10 NODE_1_length_513560_cov_54.6985, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 100031 32 100.0 34 ................................ GACTTTCGGACGAATGCAGGCACGCACCAAATCC 99965 32 100.0 34 ................................ GACTTTCGGACGAATGCAGGCACGCACCAAATCC 99899 32 100.0 34 ................................ GACTTTCGGACGAATGCAGGCACGCACCAAATCC 99833 32 100.0 34 ................................ GACTTTCGGACGAATGCAGGCACGCACCAAATCC 99767 32 100.0 35 ................................ ACCACTTGGCTATACCCCAATGTTGAGCCACAGAT 99700 32 100.0 39 ................................ GTATTCAGAACTCCGTATTCTCATAACTGTATCCTCCTG 99629 32 100.0 34 ................................ GACCATAACTGTTGCCTTGAAACTAGGGTCATCT 99563 32 100.0 36 ................................ GTGAAGCCGTAAAGCCTAATAGCGAGCCTGTAAGCC 99495 32 100.0 35 ................................ ACCACTTGGCTATACCCCAATGTTGAGCCACAGAT 99428 32 100.0 39 ................................ GTATTCAGAACTCCGTATTCTCATAACTGTATCCTCCTG 99357 32 100.0 34 ................................ GACCATAACTGTTGCCTTGAAACTAGGGTCATCT 99291 32 100.0 36 ................................ GTGAAGCCGTAAAGCCTAATAGCGAGCCTGTAAGCC 99223 32 100.0 35 ................................ ACCACTTGGCTATACCCCAATGTTGAGCCACAGAT 99156 32 100.0 39 ................................ GTATTCAGAACTCCGTATTCTCATAACTGTATCCTCCTG 99085 32 100.0 34 ................................ TGCCCTAGTCTGTATCCAAGCTGGATAATCCAAA 99019 32 100.0 33 ................................ CATGCTGCTAGTCACCTCCTTTGTTAGCTCTTG 98954 32 100.0 34 ................................ GCAAATTTTTACAATTCTATTGGCGTGAACGCCA 98888 32 100.0 35 ................................ TTATTTTGGTACTCAGTTTTCAAAAAATGGCAAGG 98821 32 100.0 35 ................................ TTGTTTTCACCGTCATAAAAAGAGGAGGTTTCAAT 98754 32 100.0 34 ................................ TCTAATCATAACGGAGGGATAAGAACTTGTAAAA 98688 32 100.0 35 ................................ CACAACAGATGATTGAAAGTGAAAGACAATTGGCA 98621 32 100.0 36 ................................ TCCTTGTCCTTTGCGAACGCCAGTTCGATGCCGCTC 98553 32 100.0 35 ................................ TTATTGAGGATATAACCAGCTGACCTTTTCGCCCT 98486 32 100.0 34 ................................ TTGCGTGAGGTCTTTCGCTATTCTCAGTTTTTTT 98420 32 100.0 36 ................................ TCTCCAATATCCGTCATATAAATGCCACATGTTACC 98352 32 100.0 33 ................................ TGCGTATTCCTTTTACCGCTCGGCAGCGTGGAA 98287 32 100.0 33 ................................ GACAAGCAGGAACATATCAAAACAGGCATATAC 98222 32 100.0 35 ................................ CAGGTATGCGTCAGCGATAGCGCTATGTGTGGCAC 98155 32 100.0 35 ................................ TTATTGAGGATATAACCAGCTGACCTTTTCGCCCT 98088 32 100.0 33 ................................ TTTGAGGGTATATTGAAAATTAATGATGATGTT 98023 32 100.0 33 ................................ AATGCATGGGAACGTACAAAAGGCGCTGATAAC 97958 32 100.0 33 ................................ TTCCAGTTTGACCCCTGCTGTCTGAGTATTCCA 97893 32 100.0 34 ................................ CCATTGACCTGTAGTTATCATTTTCAATTGTGGG 97827 32 100.0 34 ................................ ATACTAATAGCGTGTTTGCTTTGTGCATTTATCC 97761 32 100.0 34 ................................ CAAAAACGCAAGGATAATTTTTAATACAGTATCT 97695 32 100.0 33 ................................ GAATTTCCGCAATAAAAAAAGCAATCCGAAAGA 97630 31 90.6 0 ..........................C-..T. | ========== ====== ====== ====== ================================ ======================================= ================== 37 32 99.7 35 GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT # Left flank : GGCGAGCTAGATGAGTACCCGAACTATTTGCTGAAATAGAGGTGATATAAATGATGACCTTAGTAAGCTATGATGTATCAACAACAGATAATAAGGGTAAAACAAGGCTGAGAAAAGTGTCGAAAGAGTGTCAAAATTATGGTCAGCGAGTGCAGAACAGCGTGTTTGAAATAGACGTAGACTATGGCACTTTTCTGAAAGTGAAAGATAAACTTCTGAAAATAATAGACCAAAAACATGATAGTCTGCGGATATATTACTTAGGCAACAATTGGAAGCATAGAGTAGAACACTACGGCACCAAAGAGACCTATGACCCTGAAGGCGTCCTAATATTTTGACCAGCGTACCCCAAGTGAACCACAAATCCCTAGTAAGTTCGCATGAAAATACCATGCTATTTGTGAATGCACAGTGAACAAAATCAAGTCGATACACATTAAATAAAAAAATAAGTCCGCATCACGTTGAGCAAGCACCAGATATACACAACATCAAGG # Right flank : TTCGTTTCAACGCAGGACTTAGGGTGTACGTTATCTGCTCAGACCACAGCAAATGCTGTGCGTGGTGTTCAAAGCTTGCAGTAAAAGACGTTTATCCTGAATTTAACTGGAGAAAAGGGGGCTATGTTCATGGCAGAAGAAAATGATATTCTCACAAAGTTAAAAAAAGGCGAAAAAGTTGAGTGCCCTGTTTGCCATAACGGCTACTATGTTCCTGTGAATACAACAGCAGATAAGGCACATTACTTTGTCTGCACTAACAAAGAGTGCAACGGACATTATCGGTGGGAGCCGATAATCAATATTGAATAATACAAATAACCGCTCCGCTACGGCGAGGCGGTATTTTTATACCCAAATACTATACATTTTTCATGTGTTTTCCGTCAAATTCGCCAATTCACACCCCGAAATTTGTGCAAACAAATGATTTATAATTTAATTTGGCAACATTTCTGCAATTGTTGCATTTTTTCTGCAACAAAATACCCACTTTTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.30,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 487961-487725 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNPD010000001.1 Ruminococcus bicirculans strain 1001136B_160425_B10 NODE_1_length_513560_cov_54.6985, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 487960 36 97.2 30 .................T.................. GCTCCTGTCAGTAATATGATACCGAGTATT 487894 36 100.0 30 .................................... ATGTATGACATATCTACCACATTAGATGTA 487828 36 100.0 30 .................................... ATAACAAGAAATTCCATCCAGATCTGTGTG 487762 35 88.9 0 ...............A...........A-......T | CGG [487729] ========== ====== ====== ====== ==================================== ============================== ================== 4 36 96.5 30 CTACTACACTGGTGCGAATTTGCACTAGTCTAAAAC # Left flank : AATAACAACAGACAGGAGGTGATAAAAATGGGAAAGACGATCCTTAAGGCTATCATTGTAGCTGTACTTGACTGTGCTATCGCAGCTGTCAAGGAGATTGGGGAATGAGATGAAATAACAACAGACGGGAGGTGATGAAAATGAGAAAAAAGATACTTACAACTATCCTTTTATCGGCACTTAACTGTGCGATAGCAGTTGTTAAGGAAATTGAGAGCTGTGACGAGATCACAATAGACTAGGGGGTGATAAAAATGGGAAAGACGATCCTTACGGCTATCATTGTAGCTGTACTTGATTGCGCTATCGCAGTTGTCAAGGAGATTGGGGAATGAGATGAAATAACAACAGACGGGAGGTGATGAAAATGCTTTATGTAAAACAGCCACTTTCTATTGACATTTGTGTCTGAAAATGGTATGATATATACATCAAAGCGTTGATAAAATAAGTTTGGTGTTTTATTACAAAATATCATTGATTATTTTGTCAACTTTGAC # Right flank : TTAACATCAAAACCAACAAATAAAAAATCCCTTAACGCTCAATGCGCTAAGGGATAACTAATATAAGGAGTAATATTTATGGCAAAAAAGAATAAAATGAAGCCTAGAGAGCTGCGTGAGGCTCAGAAAAAAGCCAGACAGCTCAAAGCGGCTGAGATAAATAATAACGCTGCTCCTGCGATCGCTGCCATGCCTGCTGCAGAGGTCATTGCACCTGCGGCAGAGAAGAAAAAATCCTCCGTAAAGGCGGCAGGAATGAAGTCTATTCTTGTCAGCGAAAATAAAATGTACATAACCTCTTTCGGCAAGGGCAATTCTGCTGTGCTTGAATATGAGGTGGATAATAATGACTACAACCAAACTCAGCTTTCCTCTAAGAACAGCAGCAATATCGAGCTTTGTGGTGTAAACAAAGTAAACATCACTTTCTCAAGCAAGCGTGGCTTTGAGAGCGGAGTGGAGATAAATACTTCAAACCCTACTCACAGAAGCGGTGAAAG # Questionable array : NO Score: 2.68 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTACTACACTGGTGCGAATTTGCACTAGTCTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.60,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //