Array 1 13796-13946 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCGS01000070.1 Streptomyces acidiscabies strain ST105 NODE_70_length_30685_cov_40.9222_ID_139, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 13796 29 100.0 32 ............................. GAAAAAAGCCAGGTCGGAAACCATTCCGCCGT 13857 29 100.0 32 ............................. CCGGGCGTGTGCGTGACCTGGACCGTCCGCTC 13918 29 82.8 0 .....................G...GGAG | ========== ====== ====== ====== ============================= ================================ ================== 3 29 94.3 32 GTGGTCCCCGCGCACGCGGGGATGTTCCC # Left flank : AAGGTGGAACGGCATCGTCTCGTACGTAGTCATGCCCCCACTTTGCCCCACGGATCATCACGAACTGCAGCTGGAGTACTGGCCTCGATTCTTCGGTGGGTTTGGTCGTTGAGTGGCCCGGCGGTTCGCCCGTAATTTCCCTCGCCGTGTGAGGGTGGGCCGTCGCGTGTCACTGCGGAGTGCGCCGGGTTCCACGGGCCCGGAGGAGCGTCTCTGCTGCCGGGGATGTTCGCGCCGGGCTACCAGAGATCGCGTCGAGGACACTCCACCTTCGGCAATCACCCTACGGAGCGGACGGGGCTGGCGCGGGTTGTCGGGTTGAGGTGGGGGCTCGGCGTGGATGTGGGGTGGGGCGCTGAGGGGTTCGACGGAGGTGGGTGGGTAGGGATGGCGGGGATACGGTTTGGGCCGGGGGTTCGGGGAGGGGCGACGAAATGTCCGGTTCCCGGGAAGCGATGAGAAACGGTGGCTCGCCTGGGTAAAGGGCCAGGTCATGGACT # Right flank : GAGATTTCCCTGTTGGCCTGGAGCGTCCAATGCGGTCAGCGAAATTGAGGGAGGCGGCTGTCACGGTGATCGTGATGCGGTCTGTGGACGGTTAGGGCGAGGTTCAGTGGGCGGCATGCGGAGTCTTTAGGGAGACCCGATAATCAGGCCGACGTCGAATTCGCGGAATTAGCCTGTTCTGACCTCAAAGGGGAGACGTGAATCGAGCCACCAGCACCTTGCTGTCCTTCTCTGCCGCGCTGATCAGTATCGGGGTGACCGTCGCTCCGGCCAGTGCAGCCGATTCCTCGCGTATCGGTCCCGTGCATGTGTCCAGGGGCAGCGGCGAGGAGATCATCCTGTTCGACAAAGGTTCTGAGTTCAGGTCGGAATCCGGATCAGCCAGCGGTGAAGTCGGCTTCCGCGGTGGATCGTTCACATGGGTCGCCGATTTTCAGATCGGGTTCGAGTCCCGCCACTACACCGCAGTCGACGCAGGCACCCACCGGATTCAGATCAAC # Questionable array : NO Score: 5.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGATGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3067-2810 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCGS01000718.1 Streptomyces acidiscabies strain ST105 NODE_719_length_3530_cov_39.0783_ID_1437, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================ ================== 3066 29 100.0 32 ............................. AGGTCCAGCTGCCACCCGCCGTTCATCCGGGC 3005 29 100.0 32 ............................. GAGCCGGCGACCTACACCCCGCCGCCGTTCCC 2944 29 93.1 76 ..........................AT. CGCCTCGCTTCCAGTTGTCCGAGGTCCGGTTGGCGGAGGAGTTCGGGGTGAACCGGGACACCGTGCGGAACGCGAC A [2920] 2838 29 62.1 0 .C....GTT...G.A.AA.......AT.A | ========== ====== ====== ====== ============================= ============================================================================ ================== 4 29 88.8 47 GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : TGGTCTTCGTAAGCGACGGGCTGCGCCGCACCCCCGGCACCCCGCTTCCCGCCGTACGCGACTCACCCGCCATGCCGGTGCGGCGGGGCGAGCCCGCCGATTGCGGCTCTCCCGCCGTACAGGTCAGGCGGGGACGGGCTCTCCGTTCGCGACTCTCCCGCCGTGCGGGGGGGCGCCGATACGGGGATGGCATCCGCACGAAAGTGGCCACCGAGGGTCGTGCGGCACGCGGGGTCAGGGGGGCGGCACCGTGTCGGAACACGACTCTGGGGACGTACGGTTCGGTACGCGTTGGGGGCGTCTCGGGGTTGAGGTTGTTCGATATCGCGTCCGCGCGGGGTTCTGGCGATGCACTATGAGGGGCGATGGCATCTTCAGGGAGGGACAGCGAGGGAGAAATATCCGTTTCTCTGGAAGTAACGGATTCCGGGCTGACGGCGGAGTAAAGCACCAGGTCGGGGTC # Right flank : CGACGACTCCGGCGTTGGGGTCGTTCGTGGCGGATGAGCGGCCGAGGGGCTGAGCTTGGGGTGGGTTGCCCCGTCCGTATGCCGTGGGGGCGGCGTACGGACGGGGCGGGGAGGGCACGGTGAGCTGCTGTCCGCCGTGCCGTGGATTCAGGGAGGCGGCGGGCCGTTCGAGGCGATCCCCCAGACCAGCGCCGACGCCATCGACAGCAGGACCGTGACGTAGGCGATCGTGCGCCAGCGGTCGTTCACGGGGTCGCCCTCGGGATCAGCTCCTCGTAGTGCTCGCACAGGGCGTTCAGGGAGTGGGCCAGGCGCAGGGCCCTGCGGTACTCGCCCTGCGGGTGCGGACCGGTGCCGAGCTTCTGGCGGGCCTCACCGATACAGGCCAGGCAGCAGTAACGCAGGACGCTGTCCTTGCCGAGCTTCAGGGCGGCTGCCTCGACCTCCGGGAGGAGGAGGTGGAGGTGGCCGCGGAGGGTTTCGATCAGGGTGGGGAGGTC # Questionable array : NO Score: 3.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.44, 5:0, 6:0.25, 7:-1.39, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGGTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3346-1301 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCGS01000164.1 Streptomyces acidiscabies strain ST105 NODE_164_length_19436_cov_19.7864_ID_327, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================================== ================== 3345 37 100.0 36 ..................................... CGGTGATGTACGACGCCTCGCACTTGCCGTACGACG 3272 37 100.0 36 ..................................... GGCTGCACCTCGGTCGGCGTGAACGCGGGCCAGCTC 3199 37 100.0 36 ..................................... AGCCCGTACTTGCGGATGTACGGCTTGTGGATCTCG 3126 37 100.0 37 ..................................... CCGTTGCCGGCCCACTGGTACGGCAGGCCGTTCTGGG 3052 37 100.0 35 ..................................... CCCCTCGCTCAGCACGTTAGACCCTAGGGTCTATG 2980 37 100.0 35 ..................................... GCGCTTGGGGTCGGTCGCGTGCCGCTCGTACTCGG 2908 37 100.0 36 ..................................... CCCAACCCCCCCACGTACGACCTCTACCCGAAGGAC 2835 37 100.0 35 ..................................... GGCAGACAGGGTGGTCACCCCAACTACCGCGCTGA 2763 37 100.0 37 ..................................... CGTACCGGGCGGGTGGCGTGGGGACCGAGGCCCGGCA 2689 37 100.0 36 ..................................... TACAACCAGGTCGTGGTCGAGACGGTGTGCGCGCGT 2616 37 100.0 36 ..................................... CGGTCCAGGTCGGTGTGTGCCGCTGGGGTGCGGCGG 2543 37 100.0 38 ..................................... CACAGCGACCGCAGCCCGTACCTGGCGCACTCGCGCTC 2468 37 100.0 35 ..................................... ATCTGTCTGTGCCGGCGCTCCGCCAGTACGACGTG 2396 37 100.0 37 ..................................... CACCGTGCGCCGCAGCCAGGCGAACCACGCCTCGGCG 2322 37 100.0 38 ..................................... ATGTCGGTCGGGGCGGCAGCCGACTTCCGGACGCCGGT 2247 37 100.0 37 ..................................... CTGCGCTGACCTGCACCGGAGCCCCGGTGTCAGAGAC 2173 37 100.0 36 ..................................... GACGCCGCCAGCGAGCGCCGTCCGCTGGTCGTCTAC 2100 37 100.0 38 ..................................... ACGGCCATCGGTAGCCTCCGCGTCGAGTACGGACCCGA 2025 37 97.3 36 ........T............................ AAAGCGGCCTGCGCGCGGGCGGGGTTGACGCTGACG C [2000] 1951 37 97.3 36 ...............T..................... GTCGCCGGGCCGTACGGCAGTCAGCGCGGCCCGGCG 1878 37 100.0 35 ..................................... GGGATGAGCGTGCGCGGCCAGTCCCTCCTCACCGT 1806 37 91.9 37 ...T............A...C................ ACCGGCACGATCGCTCACACCTTCTTGCCCCAGGGGT 1732 37 94.6 35 ........T.....T...................... GAGATGACCTACGAGGAGTGGATCGCTACCCAGGT 1660 36 89.2 36 ........T....-....A.C................ ATCCCCAGGAAGTTGCTGACCGTCGTGTACCGGACC 1588 37 91.9 66 ......C......C......C................ AACCGGAGCGTTGAACGGTTCTTCGGCAACGCCGCGTGGGCGGACCACTTGGGAGCCGAACGCCTG CCC [1570] 1482 37 86.5 35 .....A....T...T.....C.....G.......... GCCGTCAACCGGACCGTGGCGACGGTGACCGGGAT 1410 37 86.5 36 ........T.T.....A..AC................ AGCGCGGTCCAGGCTACCGAGGCACAGCACGACCTG 1337 37 86.5 0 ..C.......T.T.......C.C.............. | ========== ====== ====== ====== ===================================== ================================================================== ================== 28 37 97.2 37 GTGGCGGTCGCCCTCCGGGGTGACCGAGGATCGCAAC # Left flank : TCCTCCGCCACGGCGCTCCACCGCACGAAGCCCGTCCTGCCACGCACACGAGCCTTTTCCCACGTCATGGACCAAGGCCAGGTACTCGGCCAACTCCCCTACCCCGAACACCTCCCCGAACTTCCGAGCCAGAGCCGCTGAACCCCGCAGATGCGCTTCCAGCGAATGCTGCTGCCCCGACACGTCGCTACGGCTGTGCGCGATCAGCACACCCCCGGACCCACCCACAACAGTCCCTCCCGGAAGACGCAGGCCCTTTCGCCGAGCCTTGGTGGGCCGAAACGTACACACCCTCACTGACAACGCCCGCGAAGAAGCCCTCAGTTCCGGTTAGGCTCCTCACCTCGCCGTCGAATCACCGAACGCCATGCTTCGGAACCTCTAGTGCACACGCGACACGCGGAACGCACCTAAGGAAAATGTCCACTTTGTTGGTGTCTGCTTCGCCCTGGACTTGTTCCCACCTCCACTCGATACGATGAATGTGCTGGTCAGCCAGC # Right flank : AATTTGGAACTGTGCGCCAACTTGTCCGGCGGTCACATGCCACAGTCGGCCTCTGAGCGATCGATCCACTGACGATGGGAAATAAGCGGCACCGGCGGCATATTCGTTGTCCGGAGGTGAGTGTCAGGCGGATTGTTTCTGCTCTTTTGAGGTTCTTGGTAGTGGCGATCGCCGCATATTTGCTGGTGATGTCGTGTTGCCCTGCGGGGTGGAGCGTTTGGCTAGATGCGTGCGCGGAGACGTGGTAGGTGCCGTGTTGGGGAACTGTCTCCCGTTGGGATGAGCGGAGCTGGCAGCAGGATTTCGAACCACGTCGTCTTTCCCGGCGGGTTCGTCTGAGTTCCCCAGATGTCGGCAAGTGCCTCTACGAGGAGGAGGCCACGGCCCCCTTCGTCGTCCGGCCCTGCTTCAGTGACGGTCGGCAACAAGGAGATCATGTCGGTGACTTCGACACGGAGACTCTTGCGAGTGCGTGTCACGGCGATGCCGCACGGGGCGCC # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCTCCGGGGTGACCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGCGGTCGCCCTCCGGGGTGGCCGAGGATCGCAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.40,-17.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [31-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //