Array 1 540657-540446 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072630.1 Leptospira borgpetersenii strain FMAS_AP2 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 540656 29 100.0 32 ............................. AACTTATTCGTCGAATCCGGTGGACTCCGTAC 540595 29 100.0 32 ............................. TTGGGGATTTCTTTTTCATCACCGAAGCGTTC 540534 29 100.0 32 ............................. AGTAGAATCAAAAACCATCCTTTCATCGTTTA 540473 28 72.4 0 ...............A.AACC..-.C..A | ========== ====== ====== ====== ============================= ================================ ================== 4 29 93.1 32 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : TAAGGTTTGGTTCGGGGAATTGGAAATCTGGGGAAAATCAACCCGACGGATCTGGAAAGAAAACATCCAAGTTATGATCGAAGTCCTTGGACATGTTTCAATACATCCATCAAGGAAAACATAGATCTAAGGAACCTGATTCAGAAATGGAGATTGTCCCCCATAAGTTTAAAATTTATAGATCGAAGGATAAATCTATTCCGTTTTTTTAGGACATTCAATTCATCTAATTCCGATATACATAATATTATGTTAAACAATTTCTCTCTTTCTGAACAAGATCGTTCCCAATCCTTTCAAAATATTCGGTCCTCTTTCTTTGGTTCCGAAATTCGTTTTCACGACGATCTGTTTCGCGAGATACTAGATTTTGAAGGTTCCTTCGATTTTTCTCTTACAAACCGAATCGTTTTTGTGAACAAAAATACAAAACCAGATCATATCTTTAAAAATAACTCTAAGCTGACATAATATGTAAAATTACTATATAAATTTTTAGC # Right flank : CAAGTTGAAGAGGACTTTAGAATCAGAAGGATCCAAACGCACATTTTTGAAGTGTTCCGACAAGAATGAGGTTTTTTACTTGCAAAAAGTATGATTTTCCGATAGTGCGAAGTCCTCCAAGCCTTTCCTCCTCCCAAAATTAGGGAAAACTCATGCAACGCTCTCTATAAATCACTTGCAGGTGTAAGTTTTACGGTGGATTTGTCGGAATTCCGACAGATTTATATTAGAGTTGTTGAAAAATTAATTCTCTGTCCGTTTCTGCTTCGTTGAAATGGATGTTTGAAGCGGTTTTGTTAATCCGAATCATGGAATTTTTCAACAACTCTATTGAGATCCAAATACTTGTGGGTAAGGTTATGCAAAATCGGCGTGGGGTTGAACCGAAGTTACAGAGAATAAAACCATTTTCGTTCAATTGAGAATTTTTACAACGTAGAATCAATGAATGCAACTTTAAGTTTTTAATATTCCTGTTTTGGAAAAATTTCATTTTTTCA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [61.7-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2614428-2614700 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072630.1 Leptospira borgpetersenii strain FMAS_AP2 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2614428 29 100.0 32 ............................. AGACCGAAGGCACAAAAAGAACCAATAACTTC 2614489 29 100.0 32 ............................. TCCGTATTTTGTTGGATTATCTGTGATGAAAG 2614550 29 100.0 32 ............................. TCGTCTGAATGTATCTTTACGAGCATCTCTGC 2614611 29 100.0 32 ............................. AGATTTGGCGTGAGTCGAGTCTTTACGGACGC 2614672 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 100.0 32 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : ATCCCGAATAATTGCGACCTCTTGTTTCGTTCGATGTGTCAATGTGATTCTTAGCCCGGTTCCGCATTTTTCAATGAAAATTGATTTATAGATAGGAAAGACACTCAATAGTTTATCGTAGAATGGAGAATTTTTTATATTTCAAAACGACAGTTCCCTTGGAGTACAACTCTGGTGAAATATTTTAGACAATCCTCTTAGAGGTTTTTCACACTTTCAGTCGGTATTTAATATGGGCACCTTACTTTTACTCTTTCTAATTTTGTTTTTAGTTACTTCCCTTTTTTCAGCAGAAAAAAGTAAGCGTACCTTAGATGTTAACACAGTGGCAATTTTCAAACACAGGGTTCCGCGCCGTATATCAGCGGGACTTGATTACGGATAAGTTTCCTGAGAAGCATATGTTTTTAGTAAGAGATTTGCCATCATAGATTGACTCGAACACAAAACCCAAAAATAGATTGCAAAAAATCCGGATTTATCCTATACAAGTTTTTAGC # Right flank : GGTTTCAGAGGCAAGGATCTTTCCATAACGTTACCCACAAATTAAGAAGGCTTTTGGGATCATAAGGATCAAAAACTGATATTTTTCAAGTGTTCCGACAAGAATGAGGCTTTTTACTTGCAAGAAGTATGATTTTGTGGTAAAGAAAACCTCCCGAGTCTTCCCACCGCCTCTCCCCTCCACCCAAAATCAGGGTGGGGCGTAAGTTTCACAGAGGATTTGTAGTAATTCCGACAGATTTATCTTCAGATCCAAGTATTTGTGGGTAAGGTTATGGGATCTTTCGGGTAACTCACTTTTCCCCACATGCGTGGGGTGAATGTACGTAAGATCCATAAACACCAAAATGAGGTACGTAATTGTGGAACTCCCACGTTCAGAAGACCGACAACAGTGTTGCGGCGATTGATCAGACTGGCATTCGCGTGTTGTTGGTATACCGCAAATAGGAGTTGTTCTTAGTCTTAAAACAACTCAGCACAACACTTCCTATGAAGCGC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 2949690-2950160 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072630.1 Leptospira borgpetersenii strain FMAS_AP2 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================= ================== 2949690 29 100.0 32 ............................. GAGACATTTGGATGATCCTGGAAAGTGACTTA 2949751 29 100.0 33 ............................. CCTATCCTGTACGGCCTTTATAGTGATGCCATA 2949813 29 100.0 32 ............................. TCAGTCGCAGAAACGAGAACGCATTCGTCCTG 2949874 29 100.0 32 ............................. CATTTGGTTCTTTGAACAAAAATCTTCGAACA 2949935 29 100.0 32 ............................. ACGCTCGATGCTTTCGAACTCGGATAGATTAA 2949996 29 100.0 33 ............................. TTTTGTGCGAGATGGGAACCGGCGAGTGTTGCG 2950058 29 96.6 45 ..T.......................... TTATCGTTATACGAAATTCCACTCACTTCAAGATCACCTGATTTC 2950132 29 93.1 0 ..T.........................C | ========== ====== ====== ====== ============================= ============================================= ================== 8 29 98.7 34 CTATTCCCCACATGCGTGGGGTTGAACCG # Left flank : TACTTAAACGAATTATTCCCGATATCAAGGAGTTGATCTATGGTGGTTTTGATTTTGGAGAGAGTGAAGACTTCTCAGAGGGGAGAGATGTCGCGGTTAGCCATTGAATTGAAGCCGGGCGTTTTTGTAGCTTCCATTAATGCGAGAGTTCGAGATCGAATCTGGAAAAAAATTTCCGAAGAATGGAAATCCGACGCGATCATGTTGTTTTCGAGCAACTCGGAACAGGGTTACGGCATCCGTTCTCACGGCGATCCTTCCCGCGAGATTATGGATTTCGACGGTTTACTTCTCATGTCCAAACCCGATCCGAAACGTGATCAGATAGAAGTCATGAATGATTCCGATTTTTCTATAACCACCGAAGACGAAGTTTCTCCTTTTTCAGATCTCAAAGGCTTTTTCAACGAAAAGGCAAACCGCCTTCTTTTAGAAGCAGATGTTCCTGATGAATCTTAGGATCAGACATAATTCTGAAGATTCCTATACAAACTTTTAGC # Right flank : CGAAAAAATAAAGGAACAGAACAAACGTAGGGCGCGTCCAAAACCAAATTCTGCTTTATCAGAAAGATCATTTCTTCAAAGATTTCTGGAGTCGTTTTAAACTTTGATATAGATTTTCCTTTTATCTAAGAAACTTAAAATTCCCCACCAAACAGACAAATGAAGAACCGCGTATAATAACGATGCAAGATACGGATCTGCAAATAAAACAAGTTTAGAAAAAAACCAAACTTTGACACCGACCGATTTTCCATTCTCCAACACGATCGTCCAAAAATTGAGAGTTCTCGCAAGAATTCCGGAACCTACAAAGACTAAAATCGCATTTTTACCGAATACAAAAAACGGTTGAAAAAAGATTTTCAAATCCAAACCGTTCCACTTTTTCAAAAGAATTAAAGAATCTAAATATTCAAAAAATCCTATACACAAAAAAGAGAGCCCTGTCGTATATACCGCGTAACTTCCGGTCCAAAGGCTTTTATTCATCGGTAAACTTC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //