Array 1 499333-499829 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCXJ01000001.1 Alkalihalobacillus clausii strain AKU0647, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 499333 32 100.0 35 ................................ ACAGATGCTGCAAGATTATATTCAAAAGTATAACA 499400 32 100.0 36 ................................ CTCCGTCATATTCCAGCCTTTTTTCGCCGCGTTAAC 499468 32 100.0 34 ................................ CTTCCTACTGTATAATAGCCGCAATAATCCCCCG 499534 32 100.0 34 ................................ CTTATAAGCCCGAACTACACGCAACTGATCTTTA 499600 32 100.0 34 ................................ AGCCATGCCTTCGTGATATTTGTATAGCTTTTTA 499666 32 100.0 35 ................................ TCGGGCTGCTGAATAGTGCTTCCGGGTACTGAGGG 499733 32 100.0 34 ................................ TTGAAAATATCTCAACGTTTGTCAGCTAATTAAC 499799 31 84.4 0 ...........T..........C.CA.-.... | ========== ====== ====== ====== ================================ ==================================== ================== 8 32 98.0 35 GTCGCACTCTACGTGAGTGCGTGGATTGAAAT # Left flank : AAACAAATATATAGGAACAACATCAGGTTCAGTAGAAGAAGAAAAGATTCTTTTATTTCCTCAGGCGATTGAGAAAACGCCGTCATAAAAATACCCCCTTCCCAGCTATACAGTCAATGTTTAAAATGCCTCTCATTAAAAAGCAAACGTTACCAACATCCTAACACATGGACAAATCGTGTGTCTCTTATTGTAAAAAACGCGGTGGTGTTAGCTGGAACTCCTTATTATCATAGAATAGCAGTACGATGGAAACGAGCCTTAAAGGCAAACGATTCTCCATTGCTTCAATAAGGAATAGCCTATGCTCACTTTTCTCTAGTGCGAACCGTAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAACAGTTTTGAATATGGGTTACTATGTACAAAAATGTAATAATGTGATCTTGTTGGGTGTGCTATGATAAGAATTAGAAGCACAATCACTCGTTTTCGAATCATTATTTCTAAAAAAGGGGTAATATTCGCT # Right flank : TTAAGACAAGCCTCACCCCTTGCTGCAACAAGTCTTTTCCCTGCTCAATTCGAGTGCATAATACGTTTCTCCACTAGATCAGCATGTGCATCACACCTATAAATACACGTATCTAAACACATAGCTAAAAAGTAAATTCCAATTAAGAGAGGAGTAAACAATGGAAGAGAAAGAAATGTTAGAGCTCTTATTACAGAAGGTAACTGATCTGGAATTGGGGTTGTTAGAGCAAAAAGAGCACAATTTGGCAGTGGCACACGACATCAAAGAATTGAAAGAAGAGCAAATCATGATTAAACAAGCAGTGCTTGAAACGAATCAGAACGTCAAGAACATAGAGGGAAGTCTCGAGAGTTTGAGTGACCAAAGTGAGTCAGTTGTCTGAAGACCAAAAATCAGTCCGGGAGATTTTAGGCGATCATGAAGTGGCGATTGGAACGCTTTGAAGAAAGCCGGTTTAAAGATTTGGATAGAAAAAGGTAGGTATCACCACGAAACAA # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.60,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 539729-536235 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCXJ01000001.1 Alkalihalobacillus clausii strain AKU0647, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 539728 29 100.0 36 ............................. GTGTCTGTGGTCTTAGCGATGTGCCGCTTCCTCATC 539663 29 100.0 36 ............................. GCATATGTGAATCAAATTCTTAACGGCGTCAAAAGC 539598 29 100.0 35 ............................. TTCGTTTAGCTCTGTATTCAGCCATTCCAGTGCGC 539534 29 100.0 35 ............................. CAACTCCGGTGCTATCTTAAGCGAACTCGTTTCGC 539470 29 100.0 37 ............................. TTGACGTACTTTGCCCCGTCTTGGACAGCTTAAACGC 539404 29 100.0 36 ............................. TTGGAAGCACAGCGACCCGACAGCCTACGGCCCCGA 539339 29 100.0 36 ............................. GGGGATACCGACCGAACCGCTTGTTTATCGATTTAC 539274 29 100.0 37 ............................. GCATAAGGGACTGGTACAAAACTACCTCAGCAAGCAC 539208 29 100.0 36 ............................. AAATGTCAGTTCTTGCGATTTCCTCACCGTCAAATA 539143 29 100.0 37 ............................. AAAATACGGGCATATAATCGGCTAAATAATTCCGGCA 539077 29 100.0 37 ............................. TTTTAGAGGCGATGAATGAGCAATCTAGTGAGTTATC 539011 29 100.0 38 ............................. GCAGACATGTGCACTTTAACGTTTCCATCGCCGAACGC 538944 29 100.0 35 ............................. TTGGCTAGATCAACAATGTCATTAAACTTATCCTT 538880 29 100.0 35 ............................. CTTTTACGAACATAGGTTCTGTGCTATACTGACAC 538816 29 100.0 36 ............................. TCGCTTTTCTTGCGTCATATTCGTCGAGTAGTGACC 538751 29 100.0 39 ............................. AAAAGTACAGTCTCAGACTGGCGGAACTCGGAAGTAAAA 538683 29 100.0 37 ............................. CTGACGGCGAAGGCGGCACGGACGCTGACCGGCTATT 538617 29 100.0 36 ............................. ATGAGACTATATCGTGTCGTTGAATCATGTTGTTGG 538552 29 100.0 38 ............................. CTGAGGCAAATCCTTTTATAATTGGTGCCGTACTCTCG 538485 29 100.0 37 ............................. TTGACTCTAAGCGGAATTTATCAGCGCTCTTTTTAAA 538419 29 100.0 37 ............................. GCTCCTTTTCTACATCCGTAAATTGCACTTGATGGGC 538353 29 100.0 37 ............................. TGGAAGATTCCATGCTTCGGGCAAAATTGAAAGAATA 538287 29 100.0 36 ............................. ATAACTGCCGAAGAAAATGTAATTGGATACCATTAT 538222 29 100.0 38 ............................. ACTCATGTTCGATTCATTCTGGATGAATTTGCAAATAT 538155 29 100.0 39 ............................. AATGAGGGCGATTGGGGCTTTATCGTATATGAGCCGATG 538087 29 100.0 36 ............................. TCGAAATCCAGGCTCGCGTCATAGCAATCGAATACG 538022 29 100.0 35 ............................. GTGCATACAGCACCTTATTGACTCCGTCTACTTTT 537958 29 100.0 37 ............................. TCCACTTTCGCCAGCATCGATACGGGATGCCTTACGT 537892 29 100.0 37 ............................. CTGGTGTGCATGGCTAAAAAGCGTTGGAGTGACGCTG 537826 29 100.0 36 ............................. ACTATGCCCACCTTGCTTCCCTTGTCGCAATGGGTT 537761 29 100.0 40 ............................. ACAACTGACAAAGATAAGCTCTTGAATCGTTCTGAACTTC 537692 29 100.0 37 ............................. TTGTCTAGATTGTAATAATGGGTAGGCATATCTACCG 537626 29 100.0 35 ............................. CGTACACCGATACGAATCAGCTCCTTTTTGTCATG 537562 29 100.0 35 ............................. AAGCGCATTGAGCCGGTACAAATTCGCTAACAATC 537498 29 100.0 38 ............................. GGAACCAATACACATGAAAACCACCAGAAGGCGTAGAA 537431 29 100.0 36 ............................. TCGGAAAATGTGGATGTTCTGGTAATTGACGCCGAA 537366 29 100.0 35 ............................. CGGATGACTTTTTTATGAAAGGGGGGTCTAGGACC 537302 29 100.0 36 ............................. TCACATAGGAGATCTTTTAGCCAACGCGCCTAACTC 537237 29 100.0 35 ............................. ATAGCGGACTTAATAAACTCGTAAGCCCCGATCAA 537173 29 100.0 37 ............................. TTGTTAATTACTTGTTAAACGGAAATACAAAGCATTA 537107 29 100.0 36 ............................. AAAGAATCAAAGGTCGGCATCACCTTATCTTTATAA 537042 29 100.0 35 ............................. TACGATGCAACTTATCTAAGTCAAGAAATGACTGA 536978 29 100.0 37 ............................. GGTAAAGATGGCGTAGACGGTAATGATGCTGTTATTG 536912 29 100.0 35 ............................. TGGCCTGACGATAAGCGTCTTCGTTGTCCCAAATA 536848 29 100.0 35 ............................. TGGCCTGACGATAAGCGTCTTCGTTGTCCCAAATA 536784 29 100.0 29 ............................. ACGCACGCAACGACGGCAACTGGGACGGC 536726 29 100.0 38 ............................. AAAGGTTGGCACATCTTTGCGAGACAGTGTGTTTTTAA 536659 29 100.0 38 ............................. GAAGTAGCTGCTATTGTCTCTTTTTTGCATGCCCGTTT 536592 29 100.0 36 ............................. TTGGGTACTAACGGCGTGTAAAACTCTGATATGACA 536527 29 100.0 37 ............................. TGAGTTATAACCCTATTCATACTATCGCCGTTAATCT 536461 29 100.0 36 ............................. ACGTAAAGAGATTCTTTCAAAAGCCTTGCCGCCTCA 536396 29 100.0 39 ............................. CTCGGCCATACAGCACGCTATCAAGTAAAAACGATTCAC 536328 29 93.1 36 ..............A.............T CTTCTTCGTCGTCATCTTCTTTAAACGCCCAGGCAA 536263 28 86.2 0 ......-.A....C..............C | T [536253] ========== ====== ====== ====== ============================= ======================================== ================== 54 29 99.6 36 GTTTTATCTGAACTTAGTGGGTTATAAAG # Left flank : ACGATAGGCAATCGGTAATTTCTCTACTTTGTACGTTACCGCAATCCGCATAAGTCACCTCCGACAAGGAATTTATACCCATTATAAATATACCAAATTTTTGGTTACTCTAACAATAACCACTTGATTTCAAAACCGATAATTCTATCATAGTTTGATCGCTGACAGCTTGTGTCAGTAGTAAAAAATTTTTTTGAAGAAATTCTAGCCACGCTATCCCTACATATTTCTCATAATAAAAAAGACCTACAAACATTTAAGAAATATCTTTTTCGCTTATTTAGATTAATGGTAGAATAGGAGAAGGACATTTCACTGATTGCCGTGAATCGATTTTGATGAGGAATGGCTGAAGCCCTTACCCATTAAGGGATTCAGACTATTTTAAAATGATTCTAAACACACGACTGGCGATCTACTGCAAAATGAAGCCATTTGATAGGACAAGCAAGCGCGAAAAAGCCCGTTGCTTTAAGGGTTTTTGTTGGCTGAAAAGAAGG # Right flank : CGAAGAAGACTTGTTATTTACATGCTTTTCAGGCTTTTTTATCCATTTTATCCCCTTCACTTCAAGCATCCAACCTTCTTTGACATAGTTATCCAGAACAAGGTACACTAGAAACTAGAGTCATAGGGAGGCGGTATTATGGGAAATGCGAGACGTGATTTGCAAAAAGTCGAACGGATTTTTACCATTTTAAACTTGCTGAGAGAGCGAGATACCATTACGGCAAATGAGCTGGCTGAATATTGTGGGACAACACAACGGACTATTTATCGTGATATGGCGTTGCTTGAAAAAGTAGGCGTACATTATGTAACAGAAGGAAAAAGCGGTTATCGGCTTATTTCTGGTCCTGTTATACCCCACCGCAAACTGACGCAAGAGGAATGGATGGCGCTCACTGTTTACCCACTGGTAACAAATGATTTTCTTCATAATGACCACCCGGTACATGATGCCTATCGTTCTGGTTTCGAAAAATTGAAGGGGCTTACACGTGATTC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACTTAGTGGGTTATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 3 548554-550545 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCXJ01000001.1 Alkalihalobacillus clausii strain AKU0647, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 548554 29 100.0 37 ............................. CGGTGAATAGTGTCATATACTCGCTATTATAAAATTC 548620 29 100.0 38 ............................. TAAAAATAGATGGTAAGGAGGGAGAAGGATGGATGCGA 548687 29 100.0 38 ............................. CTTTATAATTGATTCCATTCGAATTTCTCCTTTTCTGC 548754 29 100.0 37 ............................. ATCGGACAAAACAGGCTATTCGTTTGGCTAAGGGAGA 548820 29 100.0 36 ............................. AATGCTGACCCATTAGACTTAAAACTATCCGCAACA 548885 29 100.0 37 ............................. GGTTGATGGGTTTAAGAAGATTTATGGCGGTTTACTT 548951 29 100.0 36 ............................. CATTACACCACGTGGATGTAAGATTGATATTCTACG 549016 29 100.0 38 ............................. CGTCTAACGTTTTGGCTTTCTTAAACCGTTCCTGGATC 549083 29 100.0 37 ............................. TAATGCTTTAATCTTTTGGCTGCGCTGCTCAATGACA 549149 29 100.0 36 ............................. CGACTCCAACCAGCGATTCCTTAATTGATGACATAA 549214 29 100.0 36 ............................. TATGTAATGAAATCCCTATTACTTTATGCCCTTTCG 549279 29 100.0 35 ............................. AATTTAACATAGCGCTGCGACTGGACGGAAAATGA 549343 29 100.0 37 ............................. GAGGACTCCCAAGATTTGATTAGATTGACTGTCTTAG 549409 29 100.0 36 ............................. TTGGATAGTTCTTCAAACCTCTTTTCAGTAGAGTCT 549474 29 100.0 36 ............................. TATTCCTGTTGCATTCTTTATCTGGGGGTGGATTCA 549539 29 96.6 37 .......C..................... ACGCCTGTCACAATCAAACCCACTGGCCCTAACAAAA 549605 29 100.0 37 ............................. TGAAAACTGTGATTTTTGCTTGGATGTTCAGCAAAAA 549671 29 100.0 36 ............................. TTGTATATTGCTCGGTTCCCCGTTTAGCCTGATCGG 549736 29 100.0 36 ............................. GTGTTAAACATAGCTGATGTTTTGTTTAGGACACTT 549801 29 100.0 37 ............................. TAAAACACATGGCTGAAAGCATACTTAACCTGGATAA 549867 29 100.0 37 ............................. CTGCGAGTAGCTTTTCGTGCATTCGGTTGTCGTCCCA 549933 29 100.0 36 ............................. CGAATTGATCGCGGAAAGCCTGAAATCACACGATTT 549998 29 100.0 36 ............................. GTGGGTAGGTGGCTGCAACAGGATTGGCTTTAATCC 550063 29 100.0 37 ............................. ACGAATGTGGTGGCGATCTCTGGATTTAGAAACATTC 550129 29 100.0 36 ............................. GAGGTACGTAATAACAGCTGTTAGCGCAGCTACCGC 550194 29 100.0 36 ............................. GCTTCTACTTCAAGCAATTTTTTAGAGATCGGCAGT 550259 29 96.6 36 ...........................G. CTATTATTTAGGCGGAAAAGATTGGGTGTGGCTATA 550324 29 100.0 39 ............................. TCCCTTAGAGCACTATATAAGTCGTCTTTTGCGCTAGCA 550392 29 96.6 36 ............................T AAATGACATTCATCGTGTTCTGGAATTCGGGAGCGA 550457 29 96.6 31 ................A............ AAGAAACCAAGCTAATCTGAAGTCACTAAGC 550517 29 75.9 0 .G...........CA..A...G....GG. | ========== ====== ====== ====== ============================= ======================================= ================== 31 29 98.8 36 GTTTTATATGAACTTAGTGGGTTATAAAG # Left flank : CAAGCCATTGAAGGCGTGGTGGTAACATGTTTGTCATTATAACGTACGATGTCGGCCAAAAGCGAGTTGGAAAAGTATGCAAAACGCTGCGAAAATATCTGGACTGGACCCAAAACTCCGTATTTGAAGGAGAGATAACGAAAGGAACATTAAGTAAATGTATGGCTGAACTCGATACCATTATCAAAAGAGAGTCAGACTCTATCTATTTATATCAGGTTGCCAATCCAAGAAATTTAAAGAAGATTATCCATGGCCATGAGAGAAACCCTTCCGACTTGTTTTTATAAATGATAAAATGAGACGAAACATTCACAGTTTGCCGTGAATCGGTTTTGATGTAAAATGAGCGAATCGCTTGCCCCTTAAGGGATTCAAGCTATTTTGAAGTGATTCTAAATACACGACTGGCGATCCACTGCAAAATGAAGACATTTGATAGGACAGGCAATCGTGAAAAAGCCCGTTGTTTTAAGGTTTTTTGTTGGCTAAAATGAAGG # Right flank : GGATTAAAATAAAATTAGTAGTATCGAAAGGAGCATACCTGTTAGAAGGGGTTGAAACAAAAAGAGCCCCTAGGGAGGATGTGGAGTGTCTGGAGTGTCAACGAGCAAGAATTGGAGTAAATTCGTGCCCTTACAATCATGACGAGCGGGTTAAACCCTTTTACACGTTCAGGCGACGATGGTCCGCCATCACAAGACTAATAATAAAACTGACTGGCCTCTAGCTGAACTTGGCTTATTTCCTCGAAGACCGTGGCATTCTGTTGGTGATGGGGAACCCGATGCATGTTTCGAAGTCCAAAGGAGCTCGACGATAAGCTTCAAGGTAAAGCACGATGTCAAAGATGCGCGAACGATTGGTCTTCTCGTTAAAGACAGGCGCTTTAGTTACCTGCGTATCCTTCAGAGCCATGAAGCGGATTTGTGGACGGAATCAAACCTTCGAGTGTCATTAACGGAAGACTTGGAAACGAGCACAACAAAAAAATGAACCCCGTCCA # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATGAACTTAGTGGGTTATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 4 579610-580062 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCXJ01000001.1 Alkalihalobacillus clausii strain AKU0647, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =========================================================== ================== 579610 32 100.0 36 ................................ TTGGATTTCTTCTGTGCACCATCTATCTCGACCTTC 579678 32 100.0 34 ................................ ATGAGCGCATATAAAGTCTCGCTCTTTTGCTTTT 579744 32 100.0 34 ................................ GATCAACGTTAAGATCGCCTTTGCGTAGTCCTGA 579810 32 96.9 33 ...........C.................... CCAGCTGAACTAGCAGCTTTTTTCAGTGCCGAA 579875 32 96.9 59 ...................T............ CATTTAAATTGTACCGTGTCGCCTTCTTTCACGGGTCGCACTCTTCGTGTCAATCATTT 579966 32 78.1 34 .C.......C...C......T.T..C.C.... GGGGCGGAGAGCAGGCCCCTCGCGCTGCTCCCTT 580032 31 75.0 0 ...A........AC......A.C.-C.A.... | ========== ====== ====== ====== ================================ =========================================================== ================== 7 32 92.4 38 GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Left flank : CCTGGTTCCTCGGTTTTAACGTTATCGTTTTTTTGCATGTATTTACGCATGCAGGGCAAGCACTGCTACTGAGAATGTATACACCAGGCGTCATTACCGCCATTACCGTGACCCTTCCATATTCACTATATTTGTTTTACCGGTTAGAAGCGGAATATAATATTCGGGTTCTTGACCTTATTGCCAGTATCCCATATGGATTGACCATTATCCCAATCGTGGCTTTCGGTCATCTACTAGCTAAAAAAGTGGTTCGTTAAAAAAATGTGGAAATGGATCGTTTTCAGTTTTAACTTCAATAACAAACAACTACTATTTTGGTGCGAACCCCAAGCGCACATAAAATTACTAGATCACCCGCACCAAAAAAGCACTTAAATATGGATGAATGTGTGAAAAAGTGTTGAAATGTTGTTCGTGTCCCGTGGTATTATATAGGAAAAGAGCGGCTTTTCTCTATGATTCATCAATTTATTTCCAATAAATAGGGGGATTTCGCT # Right flank : TTCTACCTATCGAATTCCGCTACCGATTCCCGTTTGCAAAAAATCCCCTTTTCTTGTAATCTCCCAATTCCCCGTACCTCGCAAAGTGTAGCTACCGTATTTATTGTTGTCATTCGTGTTAATATAGAAAAAGACTAGCTACAGGAGGAAGCGAAATTGGAAATTCGTACAGTGAAAGGCTCTGACTACTATGTCATTTCCCCACTAATTAATAAGTGGTGGGGTGGAAGAAAGATGTCGGATAAGTTACCGAAATTATTTTTCGACCATTTTTCCAATACAAGTTTTGTTGCTGAAAGGGATGGAATACTTATCGGCTTCCTAATCGGATTCTTTTCTCAATCCCATCAAAAAGTAGCCTATATACATTTCGTTGGCGTCCACCCTGATTATAGAAAGCAAAGCGTTGGCAACCAATTATACAATCGATTTTTTCATGTGGTTCAGCAAAACGGACGAAATATTGTTCGCTGTGTAACTTCTCCTGTCAATCAAACTTC # Questionable array : NO Score: 8.51 # Score Detail : 1:0, 2:3, 3:3, 4:0.62, 5:0, 6:0.25, 7:-0.21, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 587285-588178 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCXJ01000001.1 Alkalihalobacillus clausii strain AKU0647, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 587285 32 93.8 35 .........C.T.................... ATACGTATAGATAACTGCGCCACCTCTTTGCGCAT 587352 32 100.0 33 ................................ ATACCCATCAGCAAGCAATGCTTGTTCGACTGC 587417 32 100.0 35 ................................ GTACCTCTCTTGTATTTCCGGCCTCCGCGTGGTCC 587484 32 100.0 33 ................................ AATCATAGCTTCATCAGACAATGCTTTAAACGC 587549 32 100.0 34 ................................ CTCAGTGGCCGTTTTGACTGACCGACCGTCAAAG 587615 32 100.0 36 ................................ CCATTCGCTCTGAATAGATTCCCTGGCTTTCTGTTG 587683 32 100.0 33 ................................ AATCAGCGCGGCTATAACTTCGTCGACTCCCTC 587748 32 100.0 34 ................................ GTTGGAGAAATGTCTCCACAAGTTATCAGCTTGC 587814 32 100.0 34 ................................ GTGTGTTCTGTCAAGATTCCATTGCACAAATGCT 587880 32 100.0 34 ................................ ACAGTCATTCGGGCTGTTAAAATGGCAAATTTCC 587946 32 100.0 35 ................................ ATTGCTGGTCATCTCCTAACGTATTTTGGAATAGT 588013 32 100.0 34 ................................ ATCATACACTTTTATATTCCGTCTTTTCCGTTGC 588079 32 96.9 36 ...........................A.... TTTTTAATTTCTCGCTCTACTACAACGTCCTGGATA 588147 32 84.4 0 ................C...A.......C.CC | ========== ====== ====== ====== ================================ ==================================== ================== 14 32 98.2 34 GTCGCACTCTTCGTGAGTGCGTGGATTGAAAT # Left flank : AAATGGCGAAATCAAAAATCCGCATGGTTGGCAGTGAAAACACGGTAGTGCCAGCATTTGCGTGAAAAGCGTAAGCCCGGAGTCCTTCACCTCCGCTAGTTAGCCCCATAGCCTAACTAGCGGAGGTGTTTTTTCATTAATTGGGAAGGGGAGAGAAGAACCCAATCGAATAGGTGTATAAGCAAGGAACTTTCCTTACGCCAACAAGAGTTTTCTTATCAAATATAGTAAAATAGACAGTAGTAGAGACAGACACAATTGACCAGGGAGATGAACATTTACAATTATTCATTTTAGTATTTTGAGCCTGTGATTCTTTAGTGCGAACCCCAAGCGCACATAAAATCCCCAGATCACCCGCACCAAAAAAAAGCTTGAATATGTGTTAATGTGTGAAACAGTGGTGAAATGTTGTTGGCGTCACATGGTATTATAGAGGAGAAGAGCAGTTTTCCTCTATTATTCATTAATTGCTTTCCAATAAATAGGGGAATTTCGCT # Right flank : CCTCACCACCACTGCTCCTGAAGGAAATGCACAGTTGTAGAGGTACTGGAAAAATAAGGTCTTCGTGGTGATGGTAGAACAACAGCCCAAAGCTTTGACAATTAGTCTACCTTAAGAGCGATTATGAAGATGACTTCCAAATATTCACCATTGGTTCGTCTGGGACGGCGAATGCCGAAAATCTATTTAAGTTGTTGGAGGGATTAGTCAGCATGTTAACAAGGGAAGATATCTTTAAGCACGTCAAAGAAAAATTCCGTACATCGCCTGATTATCCATTTCAAAAATTTCCAACCTATGCCGCTTTGAGACATGGATCGAATGGAAAATGGTATGGTCTTGTAATGAATGTTCTTCCAGAAAAATTAGGGTTGGATGGTAATGACGAAATAGACATTCTGAATTTAAAATGTCTTCCTGAAATAAGTGGCAGTTTAAGAAATGGAAAGAGTATTTTACCTGGATACCATATGGATAAGGAAAATTGGATATCAATTGTT # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTCGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTTCGTGAGTGCGTGGGTTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.70,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 6 591977-592539 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCXJ01000001.1 Alkalihalobacillus clausii strain AKU0647, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 591977 32 100.0 35 ................................ AGGGCTACCGTAGAAATGCTGTCTGGGTCATGAAT 592044 32 100.0 35 ................................ CTTACCAATGATTTTTCCTGCTTGATCCTGGTCAA 592111 32 100.0 34 ................................ GTCCTGCTTTCCCTCTACTCCCTTTAGGCAGCTA 592177 32 96.9 33 ...........T.................... GCAAAAATGGAGCTGCAGTAAATCCAAAGTCAG 592242 32 96.9 35 ...........T.................... TTTAATGTCTCTGCCTCGATTGCGAGTAAGTATTT 592309 32 96.9 36 ...........T.................... AAGGCGTCGAGCAGGGCCGTCAATTGGTCGAGGTTA 592377 32 96.9 33 ...........T.................... CTTTATCGAAATTGTAAATCGGTTTAATGCGTC 592442 32 100.0 34 ................................ ATGCGAAAAACACTGTCTTTCTCGGCTTTAGTTG 592508 32 93.8 0 ......................C.......C. | ========== ====== ====== ====== ================================ ==================================== ================== 9 32 97.9 34 GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT # Left flank : CCAAACCGAAGCATGGAGTCTCGTTCACTTGGGGAAGGTGAGTTCATGGCTTTTATTAGTAATTGTTAGTTTCCTGATTGTTGCGACGTTAAAACAGGTGAAAGGGAAAAGATCCACTGGTGTAGATGCTAGTCAGTCTTTATAAAAAAAGCAGTGAGTGCTTTGTTATACGGAAGAAACAGCCATTCTTCCTGTTTATTATAAAAGAAACATAGGTTGTATGAAGGCCAATAGATCGAAAAGAACGATATTAGAGAACAACATCAACAGGTTGTCTTCCTAATATTTAAAGAAACAGGGAACAAAGAAGCCGCATTTTTGGTGCGAACCCCAAGCGCACATAAAATCACTAGATCACCCGCACCAAAAAAGAGCCTAACTACGAAAAAATATGTGTTAAAATGGTAAAATGTTGTATATGTCCCATGGTATGATAGAGGGAAGAGCAACTTTTTCCTATTATTGATTGTCTTTCTTCCAATAATTAGGAAAATTTTGCT # Right flank : TAACCGCCTATTGGATAACATGAAAGAAGCTGTTCCAGGTGAGGGAATGGACGCGGATAACGCCTGTTCCTGGAACAGCTTTTGCTAGCTAGTTGGTGTTTGGTTTCGTTCGTTTATTTTTTTCTGAACTGGTGTTTAAAGCGGTTAAACGGGGTGAAGTATGAAACTGCGTAGTCTAAGTTAATGAGCTCGCTGTATTCAAAGACGCGTCCGTCGTTAAGAATGCCGCGATTGACAATTTTCATGGCTGCGATGCCTTTTTTGCAATTTAACAAATTGGCTTGTTCTCTTGTCACGTTGACGGCACTGTAAGTGGTAATAAAGTGGGAGATGTCATAGCCGCATTGTTGGACATATTCATGGACGGAACCGGCGGCAATTTCTTCTGTTAGATCAGGGAAATAGGAGCAGGGAAGCTGTGTCGTTTCAATTTGGACCTTTTGGTAATCGACGATCCGTACGCGTGTAAACTCCCATACAAAGTCGTTTTTCATATCAAA # Questionable array : NO Score: 8.97 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //