Array 1 1345059-1348388 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016876.1 Legionella pneumophila subsp. pneumophila strain FFI337 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1345059 28 100.0 32 ............................ TGCCACCAGGATTATGCCCAAAAGCAAACAGG 1345119 28 100.0 32 ............................ ATGATGCCCGACACATCATCATATAAATGATA 1345179 28 100.0 32 ............................ ATCAGGTGGCTTGATTACCTTGGTCACTCCTG 1345239 28 100.0 32 ............................ AGATAAATGTCTCTCAACGGCTCAGAGTCTAA 1345299 28 100.0 32 ............................ TCTTCAAATCCTTCATCATCAATCCCAGTTTT 1345359 28 100.0 32 ............................ AGTCTGGAACACCAAGTGCTACTGAAGCAAGA 1345419 28 100.0 32 ............................ TAATTGAAATAACTTCTGTCCTATGTTGATTC 1345479 28 100.0 32 ............................ AGTAGAGGCAGCATTCACTGGATTAATAAATG 1345539 28 100.0 32 ............................ AAAGGCATTCAATATCGACATGATGCTTTTTA 1345599 28 100.0 32 ............................ TATTCATTCCGTGTTCTCTAAGAGCATAATAA 1345659 28 100.0 32 ............................ TTTTACCGAGCAAATAAAACAATATATCCAAT 1345719 28 100.0 32 ............................ AGCAAAAATAGCTATAGATAAATGCGTCAAGG 1345779 28 100.0 32 ............................ ATATCGCATATGATATCCGCTATTTCTTGATT 1345839 28 100.0 32 ............................ TTTCCAGTAGCTTTCTTTCTATCTTTTTTATT 1345899 28 100.0 32 ............................ ATCGCCTGATATAGCGGACGCTCTTGCAAATA 1345959 28 100.0 32 ............................ GTCCATTCTTGCGTTTCCGTCCTTGTCGTATG 1346019 28 100.0 32 ............................ AACGATGAAATTCATTTAAACGAAGACGAAGT 1346079 28 100.0 32 ............................ TACCGCTACAGTTCGAGAGCTTGTACTTCGAA 1346139 28 100.0 32 ............................ TACAGTTAGAGCAGCGTATTAACATAATTTAC 1346199 28 100.0 32 ............................ CTGAGTCCTCAGCAAAAACATTAACATTTTCT 1346259 28 100.0 32 ............................ AGTGTCATAACCTGCTTAGTTCCCCTACAGTT 1346319 28 100.0 32 ............................ CAAGGACTATTTCAAGCAGTCGGGGAGCAGGA 1346379 28 100.0 32 ............................ TATTACCAGTCACGATACTAGGTTCCCTAGTC 1346439 28 100.0 32 ............................ ATGAACTGCCAATGGAAGCCCAAGAAAAAATC 1346499 28 100.0 32 ............................ TTAATTATAGTGCTGTTATCGGCCACTGTTTC 1346559 28 100.0 32 ............................ ATTCGAAGTACAAGCTCTCGAACTGTAGCAGT 1346619 28 100.0 32 ............................ TTGTCTCTCAGCAAATAATCTTTTTAGTAGAT 1346679 28 100.0 32 ............................ CAATATTGGCATAAGCAACAACAAAAAGACGA 1346739 28 100.0 32 ............................ ATGCATCTGGGCGTTTGGATAAGCTTCTTGAT 1346799 28 100.0 32 ............................ GAGCGAAACTTCTAAATTTTCGACATCTAATA 1346859 28 100.0 32 ............................ ATTGCAAAAACTGAAAAAACCTATACCCAGGA 1346919 28 100.0 32 ............................ GATAGCATAACCTGAATCAATTGATTCAAATT 1346979 28 100.0 32 ............................ TCTTTCGTTGCGTCTTTCAACAGCCACGCCAG 1347039 28 100.0 32 ............................ TATAGAGGTTAAGCCTGAGCATTTACCTTCAG 1347099 28 100.0 32 ............................ TTTAGAAGGAGAAGCAAAAACAGACGAACCGG 1347159 28 100.0 32 ............................ ATAGGCGAGAATGACCGATGTGTAATTATAAG 1347219 28 96.4 32 A........................... AACCGAGATAGCCAAAAAGAACTTAAATTTGA 1347279 28 100.0 32 ............................ TAAGTCTGTTTGCAAAGTCACTATTTGACATG 1347339 28 100.0 32 ............................ ACAATAGTGTCATAGTCAAAAAATTTCTTAAT 1347399 28 100.0 32 ............................ TTCAGCTAAGGCTTTTTTATTAAAACTTAAAT 1347459 28 100.0 32 ............................ ATGATATCGCCAAGGCTTATTGAGTGGACAGA 1347519 28 100.0 32 ............................ ATCCTTCGAGAGGAAGGAATCCCTCCGTATGC 1347579 28 100.0 32 ............................ AAAGGAGGCAATCAAAGCGCTACCCATATGAG 1347639 28 100.0 32 ............................ TTTTCTCAAGTAAGCCGCAGGATACTTTATGT 1347699 28 100.0 32 ............................ TTCAAACGGCGGTGACATTTCTTCTGGTTTTA 1347759 28 100.0 32 ............................ TAAAATCGAAGCAAGGTGATGTTATTGGTGTT 1347819 28 100.0 32 ............................ CGCCCCAGGGCCAGCAAATAAATTAATTATCT 1347879 28 100.0 32 ............................ TAAAGACGTGTTGGCTCTAATTCTACCGAATA 1347939 28 100.0 32 ............................ TAAACAAGGATGTGAAGTTAGATTTTTTTCTA 1347999 28 100.0 32 ............................ ATATGGCCAAAGTTGTTCCAAAACATCAGAAC 1348059 28 100.0 32 ............................ AGACAACCAGGCCAAAACCCAAATTTCCAATT 1348119 28 100.0 33 ............................ GAAGGCGCAAAGATTAGATACGGATCGCAGCAT 1348180 28 100.0 32 ............................ AATGACAAAAATCATATCAATAAATAAAAACA 1348240 28 100.0 32 ............................ ATTCATCGCTTGACCAATAGAAAGGTTCATCT 1348300 28 100.0 33 ............................ GATTCGATACATTTTTTAACTCGTCGCCCCAGT 1348361 28 96.4 0 ...........................G | ========== ====== ====== ====== ============================ ================================= ================== 56 28 99.9 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CGGTGTCTCGTAAACAGCCTACAATGAGCCAATCAAAATTGAGGCGGTTAATTAAACGTAACACCTTGACAGAGGATGAAATCAGGCAATACAAGGCAAAGATGTTTTCCAAGGGTCTGGATAATCCATATATTGAACTTGTGAGCGTATCAAATGGGCAAAGACACCGACGCTATATTGAGTTTGGCGAATTGTTCAATGAGCCAAGTCCTGGCCTCTTTGATCAGTTCGGCCTTTCTAACAGTGCTACTGTTCCATGGTTTGATTAAATTTTAAAACAAGGTAAATTCCTTGAATTCGATAGGTTAAAGTAAGGAGATATAGTTTGGTCAAATGCTTCAATACTTGATTATTTCGATACTTCTAACGACCAATAAATTTAGTTCTTTAAAAATTTGTCTTAAAATCAATTGGTTATAAATTAGCTGAAAGATATTGGGTAAATCGATTTTTTTCAGCTAACTTTCTGTTGTAACTATTTTTTTAAGATTTATATTACA # Right flank : GTTATTATGTTAAAGGTATTGGCACGCTACGTAGCAAGGTCAGGCCTTGGTACGACCTTGTTTTGATTAGGAAAGTCTAATTATGACTATAATCTCCATTTCTCTTTATGGAGTATAGCAACCGTTAGTCAAATCTATACATAACCTAAACACATAAAAATAAACTCCCTAATTCCATGGAAATGAGTGTAATTGGATCGCAGTCAAAATAAATTGTGAAGTATGATTACTGAGAAAATTAAATTTAGTTGATGAGTATCTATTGGATCATGAGAATAGTCTAATGATGTGCGTTAATTATGCATATATGCTAAAAATTACTACCTGATAAGCTAGACAGTGTCGTCAAATTAACTTCCCCATAGTTCAATACACCTGATTTGTACTGCAGCAAGAAAAGAAGAGGTGTTTTTTGCATATCTTGTGGCAATCCCCTCCAACGTTTGAGATGGGGGAAGGCATTCTCCACCAGATGACGAAGTTTATAGATCGCTTTATCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //