Array 1 34176-35103 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSQK01000020.1 Pseudomonas aeruginosa strain H3 IPC1060_20.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 34176 28 100.0 32 ............................ TGTCCGCAGCAGGCCGGTAATCCGGATAACTG 34236 28 100.0 32 ............................ TGTCCGACAACCCGCATAGCATCCCTGAGCAA 34296 28 100.0 32 ............................ AAGGACTCTGATCTCTTGACTCACCATTTCCT 34356 28 100.0 32 ............................ CGCTGCCATCCGGCGCATTTCCCTCTCATAGC 34416 28 100.0 32 ............................ AACATCCAGCCCGAGCTGAGCGATATCCCCCG 34476 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 34536 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 34596 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 34656 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 34716 28 100.0 32 ............................ AGAAGCGCATCCAGCGATACGAAGATGCACTC 34776 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCCG 34836 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 34896 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 34956 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 35016 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 35076 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 16 28 97.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCMGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 45576-43628 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSQK01000020.1 Pseudomonas aeruginosa strain H3 IPC1060_20.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 45575 28 100.0 32 ............................ TGGGGCGAAACCCCTAGGCGCCGGGCTAGCTC 45515 28 100.0 32 ............................ TCCTCAAGTTTTGTCAGCCGAGCCAGCATTTC 45455 28 100.0 32 ............................ TCGATGCCCCGGCGAACCGGGGCGGGGTGGTT 45395 28 100.0 32 ............................ TGATTGCTGCGGCACCTGAACTGCTCTCCATT 45335 28 100.0 32 ............................ TACCCCTCATTAGCCCGGCAAGTCCGGGCATT 45275 28 100.0 32 ............................ ACTCTGCGCCTCGACGTCGGGATCTACGAAAA 45215 28 100.0 32 ............................ AAAATGAAACGGATCAGCTCGCCGACAATCTC 45155 28 100.0 32 ............................ TGGAGCGCTGCACCATTACCCGCGCAGCCCGA 45095 28 100.0 32 ............................ ACCCGAATGCATCACCAACCCACGGCGTGCCC 45035 28 100.0 32 ............................ CTCCAGAGCGGGTCCGACAATAGTCAAAACCC 44975 28 100.0 32 ............................ AGGACTCAGCGAGCCTTCACAAGACGCCTCCA 44915 28 100.0 32 ............................ ATCGAGCAGTGCATCGCCGTCTACAACCAGCT 44855 28 100.0 32 ............................ TGATCGACATCAGGAACGCCCACAGAGGCCGC 44795 28 100.0 32 ............................ ATCACGCCCCAGCCACTTTTCAACCCCGCACT 44735 28 100.0 32 ............................ GGTGTGTGCGGCCAGCTCGGACCCGAACTTGA 44675 28 100.0 32 ............................ AGTCACAGCCGCCGCAGCAGCCAGACCGCCCG 44615 28 100.0 32 ............................ TTAGCGAGTCACCGGGACAAAGGTGACCACGG 44555 28 100.0 32 ............................ GCATAAAAGTGCCAACGTCGACTTTGTAGCGT 44495 28 100.0 32 ............................ AGGAGGTTCTGGTCCGTCGCCCAGTTCCCGGT 44435 28 100.0 32 ............................ TCGCCCGTCACGGAGCCCGCCGCCTTGGTCAC 44375 28 100.0 32 ............................ AGAATGGACTGCCGAGCGCCGGCCGCCAGTTG 44315 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 44255 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 44195 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 44135 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 44075 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 44015 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 43955 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 43895 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 43835 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 43775 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 43715 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 43655 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================ ================== 33 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //