Array 1 51-263 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYTK01000130.1 Salmonella enterica subsp. enterica serovar Newport strain BCW_4347 NODE_130_length_12223_cov_4.06678, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 51 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 112 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 173 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 234 29 100.0 0 ............................. | A [261] ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCCAGCGGGGATAAACCGAAAAAATCCCGCTGACAATATTTTGCCACCTCG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 408-13 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYTK01000102.1 Salmonella enterica subsp. enterica serovar Newport strain BCW_4347 NODE_102_length_15925_cov_4.46053, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 407 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 346 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 285 29 100.0 32 ............................. TTGATTTCCCCGCCACTTATTCCCCATTGCAT 224 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 163 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 102 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 41 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : GCGATAAGATCGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [10.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 14-1016 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYTK01000500.1 Salmonella enterica subsp. enterica serovar Newport strain BCW_4347 NODE_500_length_1016_cov_2.52886, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 14 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 75 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 136 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 197 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 258 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 319 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 380 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 441 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 502 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 563 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 624 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 685 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 746 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 807 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 868 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 929 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 990 27 89.7 0 ............A..............-- | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATCTACTCTATAAG # Right flank : | # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [16.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 18296-19239 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYTK01000079.1 Salmonella enterica subsp. enterica serovar Newport strain BCW_4347 NODE_79_length_19272_cov_4.47145, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 18296 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 18357 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 18418 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 18479 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 18540 29 96.6 32 ........A.................... TCATGCTTTCGACTAAATACTACCGCGACAAC 18601 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 18662 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 18723 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 18784 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 18845 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 18906 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 18967 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 19028 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 19089 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 19150 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 19211 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : ATCATCGGGATTCATTTTGTTGTCCGGGTGGCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //