Array 1 1323144-1322514 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_AP018400.1 Streptococcus ruminantium strain GUT-187 chromosome, complete genome		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
   1323143	    36	 100.0	    30	....................................	GTTCCTTCTCTCATTTATCCACCTCAAATT	
   1323077	    36	 100.0	    30	....................................	AAAAACACCCCAAAATAGGCCAAAAACACC	
   1323011	    36	 100.0	    30	....................................	ACTTAATGAAGCAGAGCATTGAACTTGCCA	
   1322945	    36	 100.0	    30	....................................	GTTTTTGCTTTTCAGAAACTATCGGCATTA	
   1322879	    36	 100.0	    30	....................................	TTAGCAAGAGATAGATAATTCAGCCGATCT	
   1322813	    36	 100.0	    30	....................................	AACATTGCATTATTTTGTGCTATTGGGATA	
   1322747	    36	 100.0	    30	....................................	TATGTACGAAACACTTACAGTAACAGAACA	
   1322681	    36	 100.0	    30	....................................	TACTGGGATAGTAGTGGTGCATCAGAGCGA	
   1322615	    36	 100.0	    30	....................................	ATACTATAATCAAATCAAATACAAAGGAGA	
   1322549	    36	  86.1	     0	...............................CCCCT	|                             	
==========	======	======	======	====================================	==============================	==================
        10	    36	  98.6	    30	GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC	                              	       

# Left flank :   AAATATGGATGATTATTTGGGCTATTCTTCTTTTACAAGAATCGCTCAACACTTAGAAGTGCTCTGTCGAAAATATCCATATTTTCATGTTATGATATTTCCTTCTCAAGAGGGATATCTATACTTAAATGAAAGCACGATTGAAACGGTGAATATTTTAGCAGATCAAATTGAGCATTATCCAGCACTTGAATTTCTATATGAGCGCTATAAGGTCTCTTATCCTTCCAATAATCCATTAGACAAACAAGAGTTTTTGACTTCTCTGCGAAAAGTTAGTTCCTATTTGTTTTGCTCTGAGATAAGCGAAGTGGTTAGTCTGTCATATAGAGATCTACTGACGTTAAAGATCATAAATACCCTTTATCAGTATGATACAAAGCCAAAATTTGAGAAATATTCCTTGTCTGTCTTGGAAGAAAATTATCTTAATACCTAAAGTTGACAAGTATTTTGATAGGGATTATAATTGGAATAAGAGAGTATAAAAATCATTTGAG
# Right flank :  CTAAGGTCATTGATTTCTTGACCTTGTTTTTGTCTTCTTAAAATGAAGACAAACTTTTTGTTTTGCCCTGAAATGTAATTTTAAAAGGCTTTTGAATGAAAGAAGAAGCGATTTATTTCTTCGTTGAAGATCGCTTTTTTAATGTCGCGATTTCTTTGAAACAACAACTTTAAATTTTTAGTAATCATGTTTTGCTTTTTCTATGATAAAGTAATGAAACTGTTATGCCGTTGTAGTGAGTGTTTTTCAAAATTCTTAGAAAATGATAGAATGTTACCATGACTATATAGATAATAAAATACTTTTGTCTCATAAGGAAAACTATAACAACTTCTCAATACTTTGCGGTCTTTTCCAGTTGTTCTCAGAAAATGCAATAAGTGCCTATAGGATGATCGCTTCTATTTGGCTTATCACTATAGAAAGAATATCATGATCTTATTCGTAGTGTAAAAAAAGAAGTAAACCTTTCTATCTTGTAATGTAAGATAATTTGTCGA

# Questionable array : NO	 Score: 6.19
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:72.22%AT]
# 	Reference repeat match prediction:         R [matched GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-1.70,0.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [5-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.37,4.91   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
//