Array 1 19590-21139 **** Predicted by CRISPRDetect 2.4 *** >NZ_LBEY01000005.1 Thermosipho sp. 1223 Ts1223_contig_25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 19590 36 100.0 35 .................................... ATTGGGCAAATTAATCTGCACACTATGCGCATGAG 19661 36 100.0 35 .................................... TTCTTTAAGTATCCAAGCCCATATGACCCATACCG 19732 36 100.0 36 .................................... CGCTTGTGCTTATACTTGTCCCGCTCACCGTTCCTT 19804 36 100.0 35 .................................... GTATTGTGAAAGCAGTATTTGGTTCTCTTATAACA 19875 36 100.0 37 .................................... ATTTTATATTCATGTTCCTTGTTTTTTTCAACAGAAC 19948 36 100.0 35 .................................... TTGGTTAAATGTTTTGTTCCATGTTTCAAAGAAAA 20019 36 100.0 37 .................................... ATAGTCAAAACACATAAATTTGCTCCAACTATTTCAG 20092 36 100.0 39 .................................... ATATTGCTGAGCGCATAATGAGGTTTGGTTTCCCAAAAA 20167 36 100.0 36 .................................... ATAAATTTTATTCATTCTATCCCCCAGCTTAACAAT 20239 36 100.0 34 .................................... AAACTTGAAGCAAGGTATGGCTACCACGATGACT 20309 36 100.0 34 .................................... ATAATTGAACCACAGACTGGACACTGCCATAGTT 20379 36 100.0 36 .................................... AAACGAGCGGCAGCATATGCGAGATACTCATCAACA 20451 36 100.0 38 .................................... TCGTTTTTGTTTTCCAACCTCTTCATAGGCAAAGCAAA 20525 36 100.0 35 .................................... ATTTCTTGGTTGTTATCTATTGTTGTCTCTTGATT 20596 36 100.0 39 .................................... ATTTAATCTATGTAGATGGCAAGCTTAGTATTACAGAGA 20671 36 100.0 36 .................................... GACAATCACAGAAAACGAAGATGCAGTTGTTGCTAA 20743 36 100.0 35 .................................... GTATCATTTTCTATAGCTGCTATAAGCTTTCTTAG 20814 36 100.0 34 .................................... TATAAAGTATCAGAGCACAAAGGATAATTATTAA 20884 36 100.0 39 .................................... TTCTGTATAAATGTACTCCATTAAACCACGCTGCTAAGA 20959 36 100.0 37 .................................... GATCATGATTATTATGGTGATTATCATTTTAGTAGTT 21032 36 100.0 36 .................................... TATCTACAAAATACGCATGGTTTCTACCAACAATAA 21104 36 94.4 0 .............G.....................T | ========== ====== ====== ====== ==================================== ======================================= ================== 22 36 99.7 36 GTTAAAAAACCTAATTCCATAAAATGGAATTCAAAC # Left flank : CTCGGAGAACTGGAATATACTCCTTTCATTGTAAAGAAGTGAGTTTCATGATGACATATATAATCAGCTATGATATAAAGAAAGATAAGAAAAGAAATAAAATATCTAAAATATTAGAAGAATATGGACAAAGACTTCAATACAGTGTGTTTATTTGCCAAATTCCAAAAAAAGAGCTTTATAATATTCTTTTAAGGATAAATCCTATAATAGACAAGAATACAGATTCAATTTTAATTATTCCAATAAATCTATCTAAAATGGAAATTATAGGTACTGTAAAAATAGATATTTTAACCAATAATGATAATTATATATTATAACTAAAATCTATCCGCGAATCTTAGTTTTCTCAAAAATATATAATATCCACGGCAGTCTTCAATAAACAACTATCTAACATTAAAACAAACTTATTTAAAAATTTTTTAATCAAAAAATATTAATACACGCATTTACGGTCCTTGACAATTTATTTTTTTTGCTTTAATATTGATAGA # Right flank : TGAATTGTTACTACACTTGTTTGATATCAATATTTATGTCTAAAATTTGATATAGAGTTTCAGCTACTTATACTGTACATATTATTAATAAAAAAATAAAAAACATGGTTACATAGCTTCTTTTATACTGAATCCCAAAAAGTTCCCGAAGTGACAAATAAAACCAACAAAGAGGCTTTTTTCTTTAGACAGTAGACTAAAAGATACAGACAAAAATGAAGAAATATATCTCAAATACGTAATGTTTACGTATGTTGTCGTATAACAATTATACTAAAACAAAAAAGTATACAAATTAATGTAAGAAATGAGACTTAAGAAAATGATACACATAAACATATAACAAATGGAAGATATAAAAAAAGACAAAATAACATGGCTCCAGTATAATACCGGAGCCATGTTATTCGAAAAATTAATAAATTGATTTTTTATTCCACTTTCGAGGATAAATACAATCTCGAGCCTTTATTTTATTTAAGTATATTTATTAAACTATT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAAAACCTAATTCCATAAAATGGAATTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 919-329 **** Predicted by CRISPRDetect 2.4 *** >NZ_LBEY01000026.1 Thermosipho sp. 1223 Ts1223_contig_23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 918 30 100.0 36 .............................. ATTTAAATACTTCTCTGGCTTCATCATCATTTCTAA 852 30 100.0 40 .............................. AGTGCGTTAGGGCTGGCTAAAAACAGCTCGCTTGTGAGCA 782 30 100.0 39 .............................. TCGTCTCTAGACGTGCGTACAACCTTTCCGTTTATAATC 713 30 100.0 42 .............................. ATTGTACAAGTATCATCATTCATGTTTACATCAAAGTTTCCT 641 30 100.0 36 .............................. GGCTTTAATGGGGACCCATCTGCCCCAGCGACAATT 575 30 100.0 43 .............................. CCGTGAAATGAGGCCTTTATTATTCAGGAGCTCAAATTCATCA 502 30 100.0 42 .............................. CATTCTCACGCATACCATGAACCAGTTGTAAAGGCAATGTGT 430 30 100.0 42 .............................. CATTCTCACGCATACCATGAACCAGTTGTAAAGGCAATGTGT 358 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =========================================== ================== 9 30 100.0 40 GTTTAGAACATACCTATGAGGAATGGAAAC # Left flank : TATGGCTTAAAATAACGTGTTTACTTTAAGGTAACTTCCAGTTAATCAAAACGAAAATAATGTGGTTTATAATAATTTATGAGGTTCTTAATT # Right flank : CTTCATTGTGTGTGTGTACAAAAATCAAAGAAAATTATTAAAAAATCAAGCACAGAATAGAACAGATAATAGGAATAGTGAAAAAACATATTTGGAGATAGAACTTTTTTATTTAAAATACCCAAACTGCGTGTATATGTAAGAATTATATTGTACAACTTGATAGAGTTATTCCAAATAATTTTTTATTTAATTTTGTGCAAGACACTTTATTATTCGAATGTATTTAGTTCATATCTCTATATGACTATTTGTTTTATATCGTTTTTTGGAGAGACTCATTAAAATTAATGAGTCTGTTTCAAAAATAGTAAGAGACTAATCCGAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGAACATACCTATGAGGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.20,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 95-265 **** Predicted by CRISPRDetect 2.4 *** >NZ_LBEY01000013.1 Thermosipho sp. 1223 Ts1223_contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 95 30 100.0 39 .............................. CGAAAAAAATTCTTTCGTCACTTTTTAGAACTCTTATCA 164 30 100.0 42 .............................. TACTTAGCCCCTCGGTTTCATATTCGCTATCTCTATCTCTTG 236 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================== ================== 3 30 100.0 41 GTTTAGAACATACCTATGAGGAATGGAAAC # Left flank : TATGGCTTAAAATAACGTGTTTACTTTAAGGTAACTTCCGGTTAATCAAAACGAAAATAATGTGGTTTATAATAATTTATGAGGTTCTTAATTGG # Right flank : CCTATTTTTACTTCTTTTTATCTTTGTGTTTGTTTAAAAATAAAAGGAGAGATGATATAATCTCCCCAGATTTGAGAATAGCATACAAGAAAACTCATAAAATATGAATTTGTTATGTTTTCTGGAATTTATACATAAAATTTTTTATTTATTTTTAAAAGAAGTATTTTATTATGTTTTTGCATCTATCTTTTGTTTTTGAATTAATCCTTTCCTATTTTTTAAACAACCCCAAAAAAATAACATAAACCATAAAATTTTACAATAAAAAGAGATACAAAAAACTAAACAGCATGGTCTGGTGAAGTACCGAAACCATGCTGTTTGATAAATTAATAAATTGATTTTTTATTTATTCCACTTTCGAAAGTAAATCTAAAATTGTAGGTTATTTTAATATGTGTCTTAAAAATTCTTTTGTCCTCTGATTTTTTGGCTCTTTGAAAAATTCTTCTGGCTTTCCTTCTTCTGATATTACTCCTTTATCCATAAAGATTATC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGAACATACCTATGAGGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.60,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 48127-47231 **** Predicted by CRISPRDetect 2.4 *** >NZ_LBEY01000003.1 Thermosipho sp. 1223 Ts1223_contig_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 48126 31 100.0 37 ............................... TGATTTTTTACGACAGAACTTTGATAAGAAAACAGCT 48058 31 100.0 34 ............................... AGATTACCGATATTGTACATATCAGCTGATTTAA 47993 31 100.0 36 ............................... CGATACCCCATGATATACCCTATCCCATACCCTATG 47926 31 100.0 35 ............................... GTTTTCTAAATTCTTTTTCAAAGATTTGTTTAATT 47860 31 96.8 35 ..............................A ACAAAACACTCAAGATGTCAGACAAATTATTAAAA 47794 31 100.0 36 ............................... TTTTGAACATCCTATATTATTTGAGTTAATTGTATT 47727 31 100.0 36 ............................... AAAAAAACAGAAAATTCCTTTCGCTGTGTGTCCTGA 47660 31 100.0 35 ............................... CAACACTAAGTTTAATAGGCTATCGATACCCTATC 47594 31 100.0 37 ............................... CAATTTTGTCTTTTTTGTTGTTTCTTCTAAATTTTTT 47526 31 100.0 35 ............................... AGTTTCAAAAGTTGTATTAGATGCAGCTAAACAAG 47460 31 100.0 35 ............................... AAATACTATGTTTGTAACCACCCTCGTAATTCGAC 47394 31 100.0 36 ............................... TAAGAATGCAGTCATAATTTCACCCCTTTCTTACTA 47327 31 96.8 35 ..............................G AACAAGAGTAACAGACGGCGATAAATTAATTTCAG 47261 31 93.5 0 .....................A........A | ========== ====== ====== ====== =============================== ===================================== ================== 14 31 99.1 36 GTTTGCATCCTACCTATGAGGGATTGAAACT # Left flank : ATTAGAAGGTGAAATTATGTATATTATTATGGTTTATGATATAGGAGAAAAAAGAGTTTCAAAAATTCTTAAGATAGCAAGAAAATATTTGAACTGGATTCAGAATTCTGTTTTTGAGGGAATTTTAACAAAATCTCAGTTTGAAAAGTTAAAGTACGAAGTGAATAATATTATTAATGAAAAGGAAGATTGTGTAATATATTTTATTCTAAAAGATTTTTCTTTTGTAAAGAAAGAAACACAAGGTATTCCAAAGATAGAAAATAGTAATTTTTTATAGATTATCACTCGTAAATTACATAAAAAATTACTATATTTTTTTTGAAAAAACCATAGATAAGGAGAAAATATAGGGGGTTTTTGAGAATTACATGAATTTAAAATAAACATTAATCTATGAGGTTAAACGCCAAATTTTTGATATAAAAATAATGGAAGAACCAAAAAAAGATTAATTTGAAAAAATACTAAAAATGTTGTAAAATAAATGTGTGTTAAGG # Right flank : TGTATATAGGTTGCATGTTTTGGCCATCATTCCTATTGTTTTATTTGTGTACATTTCCATTTATTTTATTACTTTTAAAATGATAAAAATAGATTGGCAATTTGTTAAGTGAAACCTATTTTTTCCAGAATATACGAAGTCATATAAAGTTCTACAAAGAAAAATAGAATATCCCAATCAATACTTTTCTGACATCTTCATATTCATTGGAAGACTTAATTATTAATATTGAACTGTCTATTGATTTGATTTTTAAATATTTTTTAGAGATTTCTCATCAACTTTTAGGTGTTTTTTAAAATATAATAGAACCCCCATAAAAGCTAAAATTGAAATAGGTCTCATTACTTTAATAAAATCGTTGAATGAATAACCGCTAATTGATTCTATTACAAGATTTAGAGGACTTCCTATTAGTGTAGCAAAACCACCTATGTTATCCATTAGAATAATAAGCATAATTAATGGGATTGGATTAAGTTCTAACATATCAGAAATTA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCATCCTACCTATGAGGGATTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.06%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.90,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA // Array 2 70590-69879 **** Predicted by CRISPRDetect 2.4 *** >NZ_LBEY01000003.1 Thermosipho sp. 1223 Ts1223_contig_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 70589 30 100.0 43 .............................. AACTAAGTGGCAGAACCACATGCCACTTATCTAACAAACCCTG 70516 30 100.0 41 .............................. TTGTTTAAAATTGTCTATTTGGTCCAGTCGAACCCAGTTTC 70445 30 100.0 35 .............................. TATTACGTTTTCGTAGCCGTAACTTCTGTAAACTG 70380 30 100.0 35 .............................. AAATTGCGATATCAGCTCTTGTATCTGCGTTTTTG 70315 30 100.0 35 .............................. ATGTTCTTAGGGAACAAGGAATTGAGGTGGTAACA 70250 30 100.0 41 .............................. TTGCCTTCGTTTTTTACAACTTTTAATTTTAACATATTAAC 70179 30 100.0 40 .............................. TCAACTATTGTTTCGTTTACAAATATTGGCAGATATGTTA 70109 30 100.0 35 .............................. TTCTTATCCCTCCTTTCTTTTTTTGTTCACATCTT 70044 30 100.0 36 .............................. TTGCTAAACCAACGTTGTTGTCTTTGTTTAATGTTG 69978 30 100.0 40 .............................. CGGAGGATTCTTGTTGCTCTTGGGTAGGAGTTAAATTCGA 69908 30 90.0 0 ..........................G.TA | ========== ====== ====== ====== ============================== =========================================== ================== 11 30 99.1 38 GTTTAGAACATACCTATGAGGAATGGAAAC # Left flank : TGTCTTTTAACAATAATGTTTTTCATTATTTTTAATAATATTAATTTTAATTTTCTATAGTTAATCATGTGTTTTATTTATATGAAGAATATATAGTTAAATTATTATAATATCATAATTATGTTATTTTATATCAAATAGTGTATTTTCTTTTATTAAATAGAAAATATCATTCATTATGAATAAAACATAAAATTACGTAATATAAAATAAAATAATATTTAATATAATTTGTGAATTATAAACAAATTAAAATAAATTAACTAATAGGTTTTCCGTTTACATAAATTCATACAAAATACCTTGTTTAATAAAATATCGATTGTAACTAATTGTAACGTTTGGGTTAAGGTGAAAAATATAAGGAATATTCGATGACCTTTTCCGTTAACAAAAAAAGCTTGTATATGGCTTAAAATAACGTGTTTACTTTAAGGTAACTTCCAGTTAATCAAAACGAAAATAATGTGGTTTATAATAATTTATGAGGTTCTTAATTG # Right flank : TAAAATTTTTATTTGAAAAATTTTTTTATTTTGTCAGATTTTTTTGTTTTAGATCGTAATTATAAATGAAAGAAGAATTAATTTGGAGGGAATTTTATGTATGTTATTATGATTTACGATGTTAATAGAAAAAGGGTTTCAAAAGTTTTAAGAATTGCTAGAAAATATTTACGTTGGGTACAAAGATCTGTTTTTGAGGGTAGAATAACAGAGAAAGATTTTAATGAATTGAGAATGGAAATACAGAACATAATTGTTGAAAATGAGGATAGTATATATTGGTATATTTTAAAAAAAGAATTTGTTCCTTATAGGCACTATATTGGTGAACCCAAATCAACAATTTCCAGTATTATATAGGGGGGAATTTATGGAAACATTATATATTTTTACCGATGGTGAAATCAGAAAAAAAAATAATGCAATGTATTTGGTTCCAAAGTCTAAAGAAAAAAAGCCAATGATTGTTCCATTAAAAAATGTTAGTTCTATTATGATTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGAACATACCTATGAGGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.20,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [86.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //