Array 1 41227-43115 **** Predicted by CRISPRDetect 2.4 *** >NZ_QAZJ01000002.1 Lacticaseibacillus rhamnosus strain DS3_11 DS3_11_2_length_322098_cov_27.677204, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 41227 36 100.0 31 .................................... TTTAGAATACGATTATAAGACAGTAGTTTGG 41294 36 100.0 30 .................................... AGTAAGGTAGCCAAATACAACCATAAGGGT 41360 36 100.0 30 .................................... AACTATCTAACACGCTATACACAGAATGGC 41426 36 100.0 30 .................................... TTTAATATGCAGGCGGCGACTGATTTATTT 41492 36 100.0 30 .................................... TTTAATATGCAGGCGGCGACTGATTTATTT 41558 36 100.0 30 .................................... TGATTTGCGAGATGTCGCGATAAGAAGTCA 41624 36 100.0 30 .................................... GACAACAGACTCCGTCAACATCAGTCTTAA 41690 36 100.0 30 .................................... ATAAACATCGTATGCGAATCGTAACAACGT 41756 36 100.0 30 .................................... AGTTGATTGAGGCGCGGATGTACATTCCTG 41822 36 100.0 30 .................................... CCGTTTTGGTTGCAAAACGAACCGATTACG 41888 36 100.0 30 .................................... AAGGTGTACTGCTTAGCTGACTCCCACGTG 41954 36 100.0 30 .................................... CTCGTGACTTGTCGTGATATGCATACGCGC 42020 36 100.0 30 .................................... GAAAGTTCTTTAAGTTGACCACTCATTTCA 42086 36 100.0 32 .................................... TCAGGGTGCCGGCTACATATACACGACTTTCG 42154 36 100.0 30 .................................... TCTGGAAGCCCGCAATAGTCAATTGAAGCT 42220 36 100.0 30 .................................... AAATGGTTTGAATACCCTTATCCCGCCATT 42286 36 100.0 30 .................................... TAATGACGCTTAACGCTCTCCGGTTGGTCT 42352 36 100.0 30 .................................... AGTCGTGCAAATCCACGTGCGCGCGTTGCA 42418 36 100.0 30 .................................... TTTTATGATGGGCTTGTATTTTCCCAAATA 42484 36 100.0 30 .................................... GGCAATTTTAAAGCCGTGACCGATGCCACG 42550 36 100.0 30 .................................... ATGACGCAGTTGGCGAAACCTTTGCACGTT 42616 36 100.0 30 .................................... TCGCTGACATTGACCATCAACGGCGCCGAG 42682 36 100.0 30 .................................... GCGTGTTAGTCGCTTGTGTGGCTTACCGTT 42748 36 100.0 30 .................................... GCGGCATCTTCAAAATCAAAACGACGCGCA 42814 36 100.0 30 .................................... GTTGACGCGTTGCGCTGTCGCTGGCCGTTG 42880 36 100.0 30 .................................... AAGCAACATATCAATCAAGCCGAAAAAAAG 42946 36 100.0 30 .................................... TGATGACGAAGTGAGTTTGCCCACCGCTTG 43012 36 100.0 30 .................................... ACTCGGGTATTGACAAAGATCGACGCGGCA 43078 36 86.1 0 .......................AA.C....T...G | C,G [43104,43110] ========== ====== ====== ====== ==================================== ================================ ================== 29 36 99.5 30 GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Left flank : GAGCTGGATTTGGACAAGTTATTTCAACGCTTGATCATCAAAAAGGTAAGCCAATTGATAGAGGATCAGCGGCTGATTGAGTTGATTGAGCAGTCACAACGACTGGCAATGAGCTTATTGAGAGAGCCGTTGTTAAGTGAACTTCCAGTCACAGTCGAACCTGGTGGAAAACTTGAACAAATCATGAAATACTGTAATGTTCATTTTGATGAGGAAGTACTCACGGAGCCTTTCTCGAAAGTTGAAGCGGCAATTCAGACTTTGGCGAAACTTGAGGAGAAACGTCTTGTCATTTTTGCCAACATCAGTCATTATTTAGATGTTGAAAGTCTGAGCAAGCTGTTAGATCAGGTTAAGAACACATCGTTGGAATTACTTCTCATTGAATTTTCAGATGTCGAACGCAGAAAGTTTTTTGAGAAGTGCCAGTATATCTATATTGACAGAGATTTTATGGATAGCCGAGAACTGATTGATTAAGAGGCTGTGTGAAAACACCG # Right flank : GACTCACCTCATAAATGCTATGCAAATCCCAAAAGAAGGCAACAGCAATGTCAAAAGCGAAACTAATCCTTTCGCCAGTATTTTACACTGATCTCAAAGAAATCCGTCACATGTACCAACAGGCGTTCAAATCACTTTACGGCAAATATCAAGATCGGGAAACCAATCCCTACTGTGAATCGTTGAAAAGCTTACAGAAAAAGTTCAAACGGCCTAACAATGCCTTCTTCTTTATAACCGTTGAAGATAAACACATAGGCCTGATTCGCGTTGTAACAGATCTCAAAAATTCGGCAGCCCGTATTTCACCATTTTTAATCTTGCCGTTTTATCAAGGAAAGGGATACGCTCAGCTCGGACTACAGTTGATTGAAGAACAGTTTCCGCTCATTCAAACATGGTATGTAGACACGATTGCGGAAGAACCCAAGTTGGTACATTTGTATCGCAAAGTCGGTTTTCAGCAGCTACCAGATCGGGAAACGACGATTAATGAGCAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //