Array 1 239199-238976 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB907245.1 Paenibacillus fonticola DSM 21315 G358DRAFT_scaffold00001.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ========================================= ================== 239198 25 100.0 41 ......................... CTTGGCTGTGTGGTGGAACAAGCATGAGTCTGTCGCCTTGA 239132 25 100.0 41 ......................... TATTCTGATAGGAGATAGGCTATATCCTTGAGAGCACTTAG 239066 25 100.0 40 ......................... GTTGAAGCTTCGTCTTCAGCCCTGTGTACGCTGGGTCTTG G [239049] 239000 25 80.0 0 .A.A....C.A.....A........ | ========== ====== ====== ====== ========================= ========================================= ================== 4 25 95.0 41 ACCGTAACAAGTGATGTATTGAAAT # Left flank : ACGCTAAGCGATATGGAAACGCAGAAACAACGCATCATCGACCGTCAAACCGAACGGGATACTTGGAAGCTGGAGCATTGGGACGATTTCAAGCACCGCGTTCAGTTTGTTCCAGAGATAAATTGGGACATTCCAAAGTCCTCGATTCTTGTGTTCGATAACAGCGGCGATTTGACGAAGGAAAAGATTGAAACTGTGTATGAGTTTGTGAAGGCTGCTAACCGTTAAGCAGGATAACGCTGCCCTATTGGGGTGGCGTTTTTTTGTTGGTATGGGGGTGTCGATTTAGTAGTTATAAAGTAGATGAGGAGAGCATTGTTTTTTCCCAACCGCAGTTGGCAGATTAGTTTGTAAAAGCCTTGTGTATCAAGGACTTCAATTGTTATTCTCTTAAATTTATACAAAAGTACTTTCGGTTGAGAAAATTTTGCGAATCCCTTGCGGCTGTAGTAGACTTTGTATATCGAGGTTTTTAAAAAGCTTGATTTTACTAGTCTTGA # Right flank : TCATTATTATCTGAACACAGGGGGAAATAACTCCAAGCTAGCAACCTCAACCCTAAACAAAAAAGAGGGCCGAAGCCCTCTCCCCTAGCACTTACTCCACCGCCGCAGAGCGCGTAACCAGCAGATCATGCCCCTCGTGGCCCTCATTCTCTTTATCCTTCATGGACGAACTGCCTGCTGCTTTCATTCTCCATTTCATATGCTCCGGATATCCATAAGATCCATGCTCGCTGAGGTCGAGGCCCATGACCTCTTCTTCTTGCGTTACGCGTAGGCCCATTAGTTTTTTCATTGCCCAAAGGATAGAGAGGGAGAGAATGAAGACGAAGGCGAATGTGCCGACGACGCCAAGGATTTGCACACCCAATTGCCCGAGTCCGCCGCCGTAGAATAGTCCTGCTTGGCCGACTCCGGTGCTTTCCACCAGCTTCGGAGTAGCGAATAACCCTGTGGAGATGGCCCCCCATACTCCGGCAATACCGTGAACCGAAGCAGCGGCG # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:0, 3:3, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCGTAACAAGTGATGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 142902-143181 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB907256.1 Paenibacillus fonticola DSM 21315 G358DRAFT_scaffold00012.12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================ ================== 142902 24 87.5 27 ...CG..............C.... TCGCCTCGCAGTGGCCAGGTGCAGGCA 142953 24 95.8 27 .............G.......... AGACCCTGCAGTGGCCAGGTGCAGGTA 143004 24 100.0 27 ........................ ACACGCGCTTAGTGGCCAGAAGTAGGA 143055 24 95.8 28 ...................C.... TCACGCGCATGGCGGCTGGCTACAGGTG 143107 24 100.0 27 ........................ CACCTCCGTAGTGGTTAGATACAAGAA 143158 24 83.3 0 ....G.....G....T...C.... | ========== ====== ====== ====== ======================== ============================ ================== 6 24 93.7 27 TTGTATATGAAAAATCATATACAA # Left flank : CAGCGCAAGCTGCAGCCCGAACAGTGGAGTGTCGTTTTGGATGAGGCTGACCGTCCGGTGCTGCATGTCCAGAGAGCGGGCGACAGCACGTCCTATACGATGCCGGAATAGAAGGAGATGAGCGCGTGAGCAATTTGAACGAATGGGAGAACGCTGAGCCGGGAGTTAAACGCAAAATTTTTCCTCCGGGGGAGAGCGTCATGATGATGGAGGTTCATTTTGAACAAGGGGCGAAGGGCTATTTGCATCGCCATGTCCATGAGCAGTTATCTTATTGCCTGGAGGGCAGGCTTGAATTTACTATAAACGGCGAGAAAACGACTGTATCTGCGGGGGAAACCCTGTTCATCCCCAGCATGGCGGAGCACGGCTGCGAGGCGCTTGAGCCTAGCAAGCTGCTGGATACGTTTACGCCGCTGCGCGAGGATTTATTGAAATAATTTTGGTTTTTTTAACACAAAAATCATAACAAACACGCGTGCGGTAGCTGGAAGCAGGGA # Right flank : ATACTCCAGCAGCAGCCAGGTCTAAGCGGAAAAGATCTGAAATCCACTGCGGATTCGGCAAATAATGGGGACGGAGGCTGCTCTGTTCCCATTATTTTAGTCGAACTTCCCTTTTTTGCTGTTCCACCCTTTACATATCGATTGGCTGGCGTTAGCTGCCTCCACAAGTCATTGGCGCTACTCTTCGTCACGCCCCTCTCTGCTCTCCGCCACTCCCCATCACAACTCTCAGCAAGTGATCGTCGCTACCTTCGCCACTCCCCATTGCAGCTCTCCGCAGTGATCGTCGCTACCTTCGCCACTCCCCATTGCAGCTCTCCGCAGTGATCGTCGCTACTTTTGCCACTTCCCATTGCTGCTTCGCAAGTCATCGCCACTAACCTTCGCGGCTCTCCGTAAGTCGCACCAACCTTTCTCCACAAATCATCGCTTTTACCTTTCCGCCACCAATCCCTCGCAGCCAATTCCTCGCGGCCCTGGGAGCTAATTCCTCGCAGGCT # Questionable array : NO Score: 2.53 # Score Detail : 1:0, 2:0, 3:0, 4:0.69, 5:0, 6:0.25, 7:-0.10, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGTATATGAAAAATCATATACAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.70,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 1 79804-83214 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB907250.1 Paenibacillus fonticola DSM 21315 G358DRAFT_scaffold00006.6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 79804 33 97.0 38 ................................C ATCCTACTGCCGATTGTTTTTACAATCTCTGGGTAACC 79875 33 97.0 35 ................................C TGCTTCCGGAGGAACCCGCCTGCATAGAGGGTTGC 79943 33 100.0 33 ................................. TGACAATGTAGCTGGGGAAACTCCTGATACATC 80009 33 97.0 34 ................................G CTTTATTTGAACTTGACCCGAAGAACGCTAACAA 80076 33 97.0 34 ................................A AGACACAATTCTCCTGGAAATCAATTTATTGCAG 80143 33 97.0 32 ................................A TAACCGCTCCTTCGGGGGCGGTACATTTTATG 80208 33 97.0 35 ................................G GTCGGGACGATGGCGGCATGCGCCGCAAAATACAC 80276 33 97.0 36 ................................C TCATTGTCTAGATAAGTGACAACATCAAAAAAGCCC 80345 33 100.0 35 ................................. GATTTGATTCAAGGAGTCGAGGATGGCCGTGCTAA 80413 33 97.0 35 ................................C GGGATGCGGCAATATTCTTCTATCTTGCCAACGAG 80481 33 97.0 35 ................................G AATTCTCCCTCATCGAGCCAGCAGCCGTCGCCGTC 80549 33 100.0 36 ................................. ATGATACTCTCCGAAGACTCGGCCACGATGACATTA 80618 33 100.0 35 ................................. CCGAGAGAAGGCCGTAACAAACTTCGGGAGTTTTA 80686 33 100.0 34 ................................. CAACAAAAGTTAAACTGCAAGATAATCAGAATAA 80753 33 100.0 35 ................................. CCGCGCCGATGATGTCGAGCGCCGACTCCGGAATC 80821 33 97.0 32 ................................A GCAACCGCTCACGGTACGGAACGACGTTCTTC 80886 33 97.0 35 ................................A ATATTTCAATCACCGTGTTGTTGTCCATGTCTCAC 80954 33 97.0 35 ................................A ACAGCCTTCGCAAGTATCTGATCATCTTGCTGTCC 81022 33 100.0 33 ................................. TGTGGCGAGAAGATCATCTTTATCTGCTCGGAC 81088 33 97.0 32 ................................C ATGTGAATGACCTCCTTGCTCTATGGTTGGAG 81153 33 97.0 36 ................................A AATGTGATTGCCCGGATGAAGATTTCAAAGAATCCC 81222 33 100.0 33 ................................. CTTAGGGACTTGTCCAACAATGGAACGACTAGC 81288 33 100.0 34 ................................. CTGCTGCGGCTTGGGACTCCCAATATTCTGCTAA 81355 33 100.0 35 ................................. TCGCAATATCATAAATGCGGTATTATCTTTTCTAG 81423 33 100.0 34 ................................. GGCAAAGGATGAGGCAGTGTCAAGGGCAAAGAAA 81490 33 97.0 35 ................................G ATTAGCACCACAATTTCTCCTAAGTCATTCTTTGC 81558 33 97.0 36 ................................A TTCAGTTGTTGGCACAGTTCCATATCCTTGTGCCAA 81627 33 100.0 34 ................................. CCAAGATGCGTTCAGGCTCAATATCAAACCATTC 81694 33 97.0 36 ................................C CATGTACTCCCTGTGCTTACCCACCAATCTGACCAA 81763 33 97.0 34 ................................C TCCCAATCTCTAGGGTCTAATGTGCCATCTTCCA 81830 33 100.0 35 ................................. TTGATGTGATAGTTTTAAATGGTTCATCTAAAGTG 81898 33 97.0 34 ................................G TTTCTTCAGCCTCGATCTCTTGCATCCTTTGTAT 81965 33 97.0 37 ................................A AGTCATCGCTTGTCACAATCGGTGAGAACATATCATC 82035 33 97.0 33 ................................A CATCGTCGCTACACAAGGGGTCACAGCTAGAAT 82101 33 97.0 35 ................................C GGTTACTACACAAGAACGCGTTTTTGAGGATTTGG 82169 33 97.0 34 ................................C ATCCATCGCTAACATAAATTCGCCAGCTTTATGA 82236 33 100.0 32 ................................. CGGATGAAGATATTGAAGAAAATGGTACTGAA 82301 33 97.0 32 ................................G ACGGTCGGAATCGAAGAGGTTTATATGCCAGC 82366 33 93.9 32 ..T.............................A TCTTGTACGTTTGACCGAATATATCCCCTGTA 82431 33 97.0 34 ................................A TCAAAATAAGGAGGTGTAAGATGAGAGATAAAAA 82498 33 97.0 35 ................................C TGACTATCCTCTTGATGTTCATGGATATATTAACA 82566 33 97.0 35 ................................A TACAAATTAACGACTTTATTGATTATAATATGTAG 82634 33 97.0 38 ................................G TTGAGTCGCTGCAATTACTGGCTGAAATGGGATTTATC 82705 33 97.0 33 ................................A AAGTAGAGAATATTTTTGTCGTTAATGTCCTCC 82771 33 100.0 35 ................................. GGGGCGATGGCAATACAGTGGCGGCAGCTAATAAG 82839 33 100.0 38 ................................. ATCCCGGACAGGAAGAACAGGTGCTACAGGCCGTACAG 82910 33 100.0 35 ................................. GCTAAGCGTATCCTGTGTTGGGTTCGAAGGCGGCG 82978 33 97.0 36 ................................G TCCAGTATTTCGTGGGCAATCCGGGTGTACCCATCC 83047 33 100.0 34 ................................. TTTAATTCGTTGAACTTTTTATTGTACATATCGT 83114 33 97.0 35 ................................A ATATGCTATGGAGCCTAGTCGCAGCAGAATCCAAG 83182 33 97.0 0 ................................G | ========== ====== ====== ====== ================================= ====================================== ================== 51 33 98.0 35 GTCGCATCCCTCGCGGATGCGTGGATTGAAATT # Left flank : TTAGATGAGTACCCTCCATTTTTATGGAAGTAGGTGTGAGTTGTGCTAGTATTAATCACGTATGATGTAAGTACGGTTAACAGTGCAGGACAAAGGAGATTGCGCAGAGTTTCAAAAGTATGTCAGAATTACGGACAGCGCGTTCAAAACTCAGTATTTGAATGTGTTGTAGATGCAACTCAATTTGCTGTGTTAAAATTAAAACTTATGGACATTATTGATCCAGACCAGGACAGTCTCCGCTTCTATCAGCTTGGTAACAATTACAAGAATAAAGTTGAGCATGTTGGTGTAAAGGAATCATTAGATTTGGAAGGCCCTTTAATATTGTAGTGCGAATGTAAAGCGAACATGATTTCCTTGGGACATTCGCACCGTAAAATTATCACTAAATGCATTATTTTACAAAATATTCATGTCTTTTTATTCCATAATACTATTTAAATAGTATATTTGTTGTTTAAATGTGACCTTTGGGGTGTTTTAACCTAAAAATCGCA # Right flank : GGGCAAATGTCTGATCAGATTTTCAATCCATTAGTCGCACCCCCCGCTGATGGATTGAAAATGGATGAGATCGCTAGATTGGTTAGTATTTTAAAGTTGTTTCCCTCGTGAACCCACAATCAAAACACCAAAAAAGGCGCTACTCCTCCTGAGCAGCGCCTCCTTTGCGATATTGCAGGGGAGAAGCCCCGGTGGTGCGTTTAAAGGCCGTGCTGAAATAATGCTGAGTTTCATAGCCGACTTGCCTAGCGATTTCGGCAATGGTCAGATCGGTGCCGTTAAGCAGTTGAGAGGCCCGGCGAATGCGGATTTGCGTCAAATAGCTGTTGAACGATGTATCCAGCTCCTGCTTGATCATCCGGCTTAAATATACCGGGGAGGACTGAAGCTGTTGGGCCATGGACTCCAGGGTCAGCGTGCAGTCGCCGTAGTTCTCCAGCATGTACTGTTTGGCTCTGCGCACCAATGGGGAAATGGCGGTTTCCTTCAGCACAGAGGAT # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCTCGCGGATGCGTGGATTGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.00,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //