Array 1 1-179 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJIQ01000151.1 Mycobacterium tuberculosis strain AH26_26663 2888, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================== ================== 1 29 100.0 47 ............................. ACACCGCCGATGACAGCTATGTCCGAGTGACATCCTCCCAGTCGTCA 77 29 96.6 45 ...........A................. TTGAACCGCCCTTCGCGCGGTGTTTCGGCCGTGCCCGAGTCGTCA 151 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =============================================== ================== 3 29 98.9 46 GACCCAAAACCCCGAGAGGGGACGGAAAC # Left flank : | # Right flank : CTACGACGACTGGGTCGCCACCGCGTCTGTTGACCGGCATTCAGGATGAGCATGATGGCGGCGTTGACGGTGAGGACGTTTGGTCATGAAATGACCCCGCAGGGAGATGTCCGGCGGGGTCGGTGGTGTTCGGGGTGTCGGTGTGGTGTTCAGTCTGCCGTGACTTCGGCGATGGCGGTGCGGGTGGTGGATTCGTCGACGATGGCCTTGTCGGCGGCGAAGGCGGCGACGAGGGCTTGCAGGGCGAGGTTGTTGACCGCGCGGGGGTAGCCCCGGCTGGTCTGGTGGATCAACCCGATGGCGTCGTCGGAGAACAGGGCATCGTCGCGTCCGGCTAGCTTGAGGTGGTGGCGTAGGTAGCTGCCGGTGTTGGTGTCGGTCATGGGCGGCATGGCATATCGGAGTCCGATGCGCTGGTCAAGCGCGGCGAGCACGCCGAGTTTCATCCGCCGCCGCAGGGTGGGTTGGCCGATGAGCAGGCAGGCGAACGGGCTTGACGA # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GACCCAAAACCCCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,0] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 1-131 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJIQ01000277.1 Mycobacterium tuberculosis strain AH26_26663 3027, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================== ================== 1 24 100.0 29 ........................ GAGGAGCGGCGCAGATGAGTCGCGCCGGT 54 24 100.0 30 ........................ NNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 108 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ============================== ================== 3 24 100.0 34 GACGATGCAGAGCGAAGCGATGAG # Left flank : | # Right flank : GGAGGAGCGGCGCAGATGAGCGGAGCACTCGAGACCACCGAAGAATTCGGCAACCGTTTTGTTGCGGCCATCGACAGCGCCGGTTTGGCGATCCTGGTGAGCGTTGGACACCAGACCGGGCTGCTGGACACCATGGCCGGACTTCCGCCAGCCACCAGCATGGAGATCGCCGAGGCTGCGGGGTTGGAAGAGCGCTACGTTCGGGAGTGGCTAGGCGGCATGACCACCGGGCAGATCGTCGAATACGACGCGGGGAGCTCGACCTACTCGCTGCCTGCCCACCGCGCCGGCATGCTGACCCGTGCGGCCGGGCCGGACAACCTCGCCGTGATAGCACAGTTCGTTTCGCTGCTCGGCGAGGTCGAACAAAAGGTCATTCGCTGCTTCCGGGAAGGCGGCGGTGTGCCCTACAGCGAATACCCGCGCTTCCACAAGCTGATGGCCGAGATGAGCGGCATGGTGTTCGATGCCGCCTTGATCGACGTGGTGCTCCCGCTGGT # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GACGATGCAGAGCGAAGCGATGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.90,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 1 1-131 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJIQ01000278.1 Mycobacterium tuberculosis strain AH26_26663 3028, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================== ================== 1 24 100.0 29 ........................ GAGGAGCGGCGCAGATGAGTCGCGCCGGT 54 24 100.0 30 ........................ NNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 108 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ============================== ================== 3 24 100.0 34 GACGATGCAGAGCGAAGCGATGAG # Left flank : | # Right flank : GGAGGAGCGGCGCAGATGAGCGGAGCACTCGAGACCACCGAAGAATTCGGCAACCGTTTTGTTGCGGCCATCGACAGCGCCGGTTTGGCGATCCTGGTGAGCGTTGGACACCAGACCGGGCTGCTGGACACCATGGCCGGACTTCCGCCAGCCACCAGCATGGAGATCGCCGAGGCTGCGGGGTTGGAAGAGCGCTACGTTCGGGAGTGGCTAGGCGGCATGACCACCGGGCAGATCGTCGAATACGACGCGGGGAGCTCGACCTACTCGCTGCCTGCCCACCGCGCCGGCATGCTGACCCGTGCGGCCGGGCCGGACAACCTCGCCGTGATAGCACAGTTCGTTTCGCTGCTCGGCGAGGTCGAACAAAAGGTCATTCGCTGCTTCCGGGAAGGCGGCGGTGTGCCCTACAGCGAATACCCGCGCTTCCACAAGCTGATGGCCGAGATGAGCGGCATGGTGTTCGATGCCGCCTTGATCGACGTGGTGCTCCCGCTGGT # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GACGATGCAGAGCGAAGCGATGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.90,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA //