Array 1 50140-51956 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSGH01000001.1 Collinsella sp. AM41-2BH AM41-2BH.Scaf1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 50140 32 100.0 33 ................................ TGCAGCTCCGTGAAGAACACGACATCATATGGC 50205 32 100.0 35 ................................ CAAAACGACGAGAACTTCGAGATAAACTCGACGTC 50272 32 100.0 34 ................................ GGCTCATGCCCGATCGGGGGAACACGCAGGCCAT 50338 32 100.0 34 ................................ CGACGCGCTGGCAATCGATCAGATCGTCGTCGGC 50404 32 100.0 34 ................................ TTGGTCATGCGCCCCTCGTGGACGAGCTCGTCAG 50470 32 100.0 34 ................................ GTGACGACGACCGCGGTATTGTCGATCGTGACAG 50536 32 100.0 34 ................................ CAGATGACGGCAGCAACACCAACAGGCACGCCGG 50602 32 100.0 34 ................................ GTCCAAAAGTTGCACGGTTGCACTTTTTTAAGTC 50668 32 100.0 36 ................................ CCCTGCTTCAGGGACCGAAAAGGGCTCGGTTGAGTT 50736 32 100.0 33 ................................ CTGTGGTCGATGCTCTCGATGACGTCGTTGATG 50801 32 100.0 34 ................................ GATTTTAGAGCCACGAAATACGCGAGGGCATGTC 50867 32 100.0 34 ................................ TCATCGTGCTCAAAAAGACCCTTGAGCCGATCTA 50933 32 100.0 34 ................................ ATCTGACAGGCAACGACACGATGCCGACGGTGCA 50999 32 100.0 35 ................................ ATGGGCGTTATCTCCCAGCAGTACGATCGTGCATA 51066 32 100.0 34 ................................ AACGACAGACAAATCGCTTAGGAGGCGTTATGGC 51132 32 100.0 35 ................................ ACCTGCCACGTTCCCGGGTCTCGGTCCGGCGCGTA 51199 32 100.0 34 ................................ TTACAGCCGCGAGGAGCATCCACTAGAACAGGAT 51265 32 100.0 33 ................................ GTGGTCAAGGGCACCATCGCCCCGACCGCCTAG 51330 32 96.9 33 ............T................... CCGGCGGGCACCGACATCAGCGTCTTGACCGAC 51395 32 100.0 35 ................................ GAGCGAGACGACGTCTCCTACAACAGCTCCGACCT 51462 32 100.0 35 ................................ AACCTGCTCCCCATCATCGTCGGCATCCTGGTCGT 51529 32 100.0 34 ................................ TAGCGCACGTGCGCGGCGGCACAAGCGCATCAAC 51595 32 100.0 33 ................................ ACGCTATCGTTGTAGTTGGCGGTCTGCACCCAA 51660 32 100.0 34 ................................ TTTTGATCGAGGAAGACGCCGGCTGCCACGAGGA 51726 32 100.0 35 ................................ CTAAACATTGTATGCGTAGCAATGGAAGTGTCTAT 51793 32 100.0 34 ................................ TCTTTTTTGAAATCACCCCAAGTGTAGGTGCCGA 51859 32 96.9 34 ..........A..................... CCCGAGGTGAAGGACTACATCGTGAAGGGAACCA 51925 32 78.1 0 ......T...A................TGCCG | ========== ====== ====== ====== ================================ ==================================== ================== 28 32 99.0 34 GTCGCGCCCCGCGCGGGCGCGTGGATTGAAAC # Left flank : GGGGATATGAATGACTATCCCGCTTTTTGTTGGAGATAGCCATGTACGTTTTGGTTTCCTACGACGTCTCGACATCGGATTTATCGGGCACCTCTCGGCTTAGGCGCGTGTCTAAAATATGCTTGCGCTATGGTCAGCGCGTTCAGTGCTCCGTGTTTGAGTGCATGGTGGATTCCGGACAGCTTGAAAAAATGAAAAGCGAGCTCCGGTCTGTTATTGATGAGTCAAAAGATAGCCTGCGCGTATATAACCTCGGGAAGAATTGGCAAAGAAAGGTGGAGCATTTTGGTGCGAAGAAACCTTATGACCCTGAGGCTTCGCTAATTGTCTAGCTCGATGTCGCGCGAATGGTAAGTGATGTCGATTTATTACGATGTTCGCGCGCGTTCCTTGACAACGGAATTGAGGAACCGCAGGTCGCGTAATCTTCGTTAGCTTTGTTGCGGCTTGGATGTAAGATTGCTTTGTCGAATAGTTGGTATTTGTCCAGTTAGGAGACA # Right flank : GGTGGCGACATGGCTGTCGTGTGATATCGAAAGGCGGATCAATAGGCACGCAATAGACATTCTCAATCTGTAACAACTGGGGAAATGACTGTCTAGCCGTTACAGAATGAGATAAAGATCTTGTCCGGTCAACAAATGTCTCAATCTGTAACAGATAGGAGAGGAAAACCGTTCTTACTGTTACAGATTTAGATAGATGGTTGGGTTGGTTGGTAAATGTCTCAATCTGTAACAGATAGGAGAGGAATGGGCCTCTTGCTGTTACAGATTGAGACGGAAGCGGTGAGATGTCTGAATGCTCTGCGTGAGCGAGGATTTTCGGACATGCGAGCGTGGAAAATCTCCCGCTTAGTGAATGAGCGTGGATAATCTGCCACATTGGGCCCAGTGGCACGTCAAAAGTGGGAGATTATCCACGCTCGATTTCAAACGGAAGAAAATCCACGCTCGATTTTGCCTGGAAAGAGCAATCTTCTGTCTGGGAAGCCCGATCTCGACCT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGCGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCTCGCGGGCGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.40,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //