Array 1 1699930-1700077 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046509.1 Erwinia sp. J780 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1699930 28 100.0 32 ............................ TTTATGCAGACGAAATCCAAGCTGGCAGAACG 1699990 28 100.0 32 ............................ ACCTGAGCCGAAGTTGTAGCTGCAATTGCGGA 1700050 28 96.4 0 .....................C...... | ========== ====== ====== ====== ============================ ================================ ================== 3 28 98.8 32 GTTTACTGCCGCACAGGCAGCTTAGAAG # Left flank : CCGCAGCTGGCGCAAGAAGAAATATGGGACTTCTTGCGCCCGAGGACGTTTCGTGGATACCCGTCACACTTCAAAATGGATGGACTGTTACGCCGGGAGGCAGGGCTGCTTATAGAAAAGTTTTGGGATTATTACAGCTCGATGTGACAATAAATCCAGGAACGTCTACAGACTGGACTTTGCTTTTTTCATTACCTGTTGGGTTCAGGCCTCCATTTACTTTTAACCAGGTTGTTTTCAGTAATGGTTCGAATACTACAACACCGCCGCGTGTATCAATTGGATCAAACGGAATTGTATCCTGCGTTAACATATCATCTGGCGCAGGAATATCTTTTAATATCACAATTCCGTTGCAGTGAATTCTTGCTCGTGCGACAGACCCTCTTTTTTAGCATGTTTTTATCTGATTGATTTTTATAATGGTTAAAAAGAGGGTCTGGACGAGGAAATAAGGTAAAAAGCTAAAGAAGTAAATGGGTTAGCGCGGTAAGATAACG # Right flank : GTGATAGTTGTCGCCGCCAGATCATTGCCCTGACCTTCAGGCACAAAAAACCCGGCGCGGTGGCCGGGTTAATCTTTAGATGGTTTTGATGAGGGGAAAAGCCCACGTATCACACCCAGGAAGGCCGCAAAAACATTCAGTGTTACCGCTGTAGTGATAGCAATCATTACTTCCTTAGGGAATAATTCAAATCCAAATATTTTTGCGTATCCATAACAAAAAAGAAGTATTGACCACCCATAAAGCGTTTTCCTAACGACTTTATAGGCCTTTTCTCCGAATTTGTCTCTTAAAGCCCTATCAGCTTTTCTATCCTCAACTTCTTCATTTAGAAGTATCAGGTCTTTTTCACTGGATTTTTCTTCCCGGACTCGTTCGCCTGCAGGTGGCTCGTCGACTTGAGAAAGAGTCTGGCCAGTTGGTGATGCCTCATTAGATAGCTCCGTTGTGTGCGGCGGAGCTATCTGACTTAATATGTCCTGATTAGTCTGCCCTGACAT # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACTGCCGCACAGGCAGCTTAGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTACTGCCGCATAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1876011-1876638 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046509.1 Erwinia sp. J780 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1876011 28 100.0 32 ............................ GTCTTGAGAAATGGCGCAAAGAACTTGGTGTG 1876071 28 100.0 32 ............................ CGCTGCCGCTGCCTGCCTTTCCTCAACGTTCA 1876131 28 100.0 32 ............................ AGGCGAGTTCACGCGCCCGGCGGTTCTCAATA 1876191 28 100.0 32 ............................ TTTTTAGCAAAGGCGCGGATCTCGTTTTCAGG 1876251 28 100.0 32 ............................ AATGACGGCAATCAGCAACTGCACCGCATCAC 1876311 28 100.0 32 ............................ CGTAGCGTGTGGGAATCATGCGGGAAGGAACC 1876371 28 100.0 32 ............................ CTCAGGATGGCGCAGCAGAGAACATGCCTAAG 1876431 28 100.0 32 ............................ AGCCTGGATGATGCAGCCAGCCCCCGACTTAC 1876491 28 100.0 32 ............................ CCGGAGAATGGTGAATTTCCCGGCCTGCCACA 1876551 28 100.0 32 ............................ CTTACGTGGGTTAATCAGCTCAGACTTAAAAC 1876611 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 11 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAG # Left flank : TGTAGTTGAGGATAACGATGGACGGCGCAGCACCCAAAAGGCACTACAAGAAATGGGATGGGGAAAAGTGGGTGACAGATACCGATGCGCAGCATCAGTCGCTAGTATTAGAGGTGCTTTCAAAGCAAGCATCGCTGCTTGATGAGGCTACTAAAAGAATCGCTGTATGGCAGACAAAATTACTGATGGGGCGGAAACTATCTGATGATGATAGCGCAGCTCTTAATGCCTGGATGGATTACATTGATGCCGTAGAAACTATCGATGTATCTACTGTGGACGCTGACATGCATATTGCATGGCCTGCTGAACCCGCTGGCACTTTCAACGTCACAATTCCATTGCAGTGAATTCTTACTCGTGCGACAGACCCTCTTTTTTAGCATGTTTTTATCTGATTGATTATTATAATTATTTTGGCAATAGTTAAAAAGAGGGTCTGGAGGAGGAAATAAGGTAAAAAGCTAAAGAAGTAAATGGGTTAGCGCGGTAAGATAACG # Right flank : GTACCGGCTATGGTGCAGATGGCAATCAGCTCAGCCAGATTAGTAAACTCATCGAAACGGAACAATTAAAGCCAGTAATTGACAGGTATACCCCTTTGCAGAAGCAAAGGATGCTCTTGCCTGCCTTGCTCAAGGTCATGCAATTGCCTTGGAACCTTTAATGCTTTCTCTGTGCAGACTAATTGAGCGAATGTTCTTTGCATTATAATCTGTAATGGCTTGTTTTTTACATGAGGCGTGTTCGAAATAAAATGTCATTATTATCAATATTAAGATATATAATATTTAGTGTTTATGACTATCGTAAAATTAATATTAGCAATGCCCTTGCAAGGCTTGTTGTTATTCATATCCCTGACCAGATCGGGGATGCTATGTCAGTTTTTCCGGTAATTCGCTCTCTGGAAAAATATCAGATAAAACATTTGATTATTGTCGCATCTGAGATGAATAAACCCGTATTCGAGGCCCTGACTCTAAAAAACACCATGCTGACATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 2386716-2386087 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046509.1 Erwinia sp. J780 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2386715 28 100.0 33 ............................ ATTACCATTTTTATTTTCGATTCGCTCAAGGGC 2386654 28 100.0 32 ............................ TTCATGCCGCTCCGCGAACGTAACGGAAGTAT 2386594 28 100.0 32 ............................ TGGGCGTTTGCTGATGTTGCTGATTCTGAAAA 2386534 28 100.0 32 ............................ CGATTAACGGGTACAATCATACCCTGCGCAAC 2386474 28 100.0 32 ............................ ACTCAGCTCTCACCCCAAGGGTTTTACTCAGC 2386414 28 100.0 32 ............................ GCATGAAAACGCGCCTTTAGAGCCTGCGGCGT 2386354 28 100.0 32 ............................ TCCTGTCAGAGAGGAACAATCCCATCGATTTT 2386294 28 100.0 32 ............................ AGAGAGCTGGCATTCCCTCGCGATCACTGGGA 2386234 28 92.9 32 ...........TT............... TGAATACTGATCATTGATACAAGCGAGGGAGG 2386174 28 96.4 32 ...........T................ TGGGCGCGAATCCAGAGAAAACCCGTAATTTG 2386114 28 85.7 0 .........T..........T...AT.. | ========== ====== ====== ====== ============================ ================================= ================== 11 28 97.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAG # Left flank : GTCAAATTTCGGAGGGAGTACAGAAATATGCTGCGGATGCAGGCGACAAACCCTCTGACGCGGTAACCATCAGCAAAACACCTGAGGGTACACGTGAGACCACCACCCGTTGTGACTACCAGCAGGGCGTGCCGGTGGCTTGCCGCTTCACTATTAAAACCACGCCGGGTGATAAAATTATTGAGCGTCATGCGCAGCTGACCACAGAATTTTATTAAGCGTAGAAATCAAGCTGGTGCTAATCAAGCTGGTGCTTCAGCGTTTGAACACCGTTTCTGCCCCCAGGTAGCTAAAAGATGCATGCGGGCCTCGTCACGCGCCATCCGTGGTGCGTGACGCCCCCTTTAAGCTCACTGCACCATTGTTAAGACCCTCTTTTTTTAGCGTTTTTTATCTGTTTGATTATTATCACTATTTTTATAGCGGCCTAAAAAAGGGTCTGGAGCAGGAAATAAGGTTAAAAGCTAAGGAAGTAAACGGGTTAGCGCGGTAAGATAACG # Right flank : TGATTTATCCTTAATTAATATTAATAATCCACAAGCCAACCTTAGTGCTGGCTTTTTTTATGAGAAAATATAGCCACTAAAATCACACAACGACTTTAGGTGCAGTGCTGAACTATCGTTTCGATATTGGAGCAGATGGGGTCTCTATTTATAATGGGAACGCGCTCGTCAGAAAATATAACACCTGGCATCCGGAAGATCAGATACAGACAAACAACGGTTCATTAAGAGTCGGGCTGAGAATTGCAGCAGATGGGAGAGGTATTCAACTTATTTTGAACGGCAATCCATACCCGGTCGCAGAGTCATCTGCTAATGCGCGTTCAGTCGTTATTCTGGCCGATAAAGATGCGCGAGCTTGTATGCAACTTCAATTTTGCCACCTCCGCTCTCGCGATGCTGTCCCATACGCTAAAGGGATTAAGATTATGACTCTTGGCGACTCAATAACCGTCGGGGCACGAGCGTCGAATGAATGGCCTGCAATCTTAGAAAATTGC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 2768940-2767169 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046509.1 Erwinia sp. J780 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2768939 28 100.0 32 ............................ AATTGAAAATCAGTGTTGCACCGTCACCTTCC 2768879 28 100.0 32 ............................ TCCAGCGGTATCGGTGGTGCTGGCAATCGAAC 2768819 28 100.0 32 ............................ AGGTGCAGGCGGGTGTGATACTGCTTGAGTCG 2768759 28 100.0 32 ............................ TTCGTCGCAAAAAGTTTCATCGTGATTTCGTT 2768699 28 100.0 32 ............................ GCGTAAATCTGGTAAGAAACCCGACGGATAAA 2768639 28 100.0 32 ............................ AGAGATGGCTCAACAGTTTGCAGGCAAGGGTA 2768579 28 100.0 32 ............................ TACAGCTTTTAATGGTTCTTGTCCGGCAGCAA 2768519 28 100.0 32 ............................ GCCTGGCACCAATGGCGGCACCACAACGCAAA 2768459 28 100.0 32 ............................ GCTGGGCGGCAGGTAAGCAACTCAGTGATAAC 2768399 28 100.0 32 ............................ AGTGAAATGAAGCTGGGCGCACAGCCTGATCC 2768339 28 100.0 32 ............................ AGTAATACTTGATGCAATGGGATTGCCCAGAG 2768279 28 100.0 32 ............................ TGCGTGAATCGGGAGCCATCGAGCAGGATGCC 2768219 28 100.0 32 ............................ TCTGGTTCCTGCTGCCATTCAGGTTGCAGCAG 2768159 28 100.0 32 ............................ TGTCGCCGAACCTGCTGTAGGGAAAGACAGTT 2768099 28 100.0 32 ............................ ACGTCCGCAAGTCAAGATCGTCGAAAATCGCA 2768039 28 100.0 32 ............................ TGAGCGGATGAGGTTGCGAATCGCGCGCGCGA 2767979 28 100.0 32 ............................ TGGTAAAATGAATGCGCGTGATGAAGTGTTTT 2767919 28 100.0 32 ............................ CCGACCATGCTCATCAAGTCCAGCATCTTTAC 2767859 28 100.0 32 ............................ TGATAGCAAAAGCACGGCAAATACCACACCAT 2767799 28 100.0 32 ............................ GGGATGGGAGTGTGGAAGAGGCCTGATGTGGC 2767739 28 100.0 32 ............................ ACGTTGTCGCATGGGTGCAGATGCGGCCATCA 2767679 28 100.0 32 ............................ TGAACATGGCGTGGTAGTCGGACTGAACGGGG 2767619 28 100.0 32 ............................ GCCGGCTGTGCTACTACAACAATGCGAGCAAA 2767559 28 100.0 32 ............................ AGGATGTCTAACACCCACCTGCGAAAATCTTT 2767499 28 100.0 33 ............................ TACTTCAGAGTGAAGGATTGCGGCTGGGATCGG 2767438 28 100.0 33 ............................ AACAGAGGCATTTTAATCACCTCTGGATCAGTT 2767377 28 100.0 32 ............................ AATGATGTCTGGTGACGTGAAGCAAATGAAAG 2767317 28 100.0 32 ............................ CGATGATGAAGGTCAGTTATTGGTTGATGAAT 2767257 28 96.4 33 ..........................C. TTAGGCGAGGCATGCCTCGCCCCTACGTATCTG 2767196 28 75.0 0 ......A.............TC..TGCT | ========== ====== ====== ====== ============================ ================================= ================== 30 28 99.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAG # Left flank : TCATTGAGGCGGTGGGCTTGCCGGAATAGATCTGATAGGCAGAAGCGCTGATCCCGTCGAGGCTGTGTGCGCCGACAATGATACATCCGGCCTTGGTGACGCCGGTAGGTTCGGGCACCAGGCAAAGAGCCGTGGCGCTGGCCAGCTCCAGCACGCTGCCGAGGAATCCCACGCTGCCCCAGATACGATGAGTAAGTACCGATTCATTCGCCATTACCGCAGCCAGCTGGGCGGGGGCCATTGCAATAGTAAAACCGTTTTCCATAACGTCTCCTTGTTGTCCACTCTTCCTGCGCCCGAGGTTGGCAAGCGAGAAACAATCATGGTGATGCTGGCGTTTAATCAGGCCAGCCCGCCACCATTATTCAGACCCTCTTTTTTAGCATGTTTTTATCTGATTGATTATTATCATTATTTTGATAATGGTTAAAAAGAGGGTCTGGACGAGGAAATAAGGTAAAAAGCTAAGGAAGTAAACGGGTTAGCGCGGTAAGATAACG # Right flank : CTTCTGGTAAGCAACAGGGCGCTTTTATTGACCAGATAATAGAAGATGACACCAATTATCAGCGTGAGTGAAAGGTTAAGGGCAAACATCATCAGTAATTTAGCTGGCCACGGCATTTTTATAATATGTACCACTTGATATAACAGCGATGCGCCGATTCCTTGTGCCATATAGAAGAATATTGCTCTTTGTCCGATCCATGATAAAGGTGTTTTTTTGCTGGTAAATATCCCTGAAAAAATTACGCACACTGATATTAGCGAAGCCAGAACGTATGGCAGGGAAAGGTTAAGCTTGAATTTCTGTAAGTTAACTGCATCCGGGTTTGTTTTGTAGAGTATGAAAAATACCAGGATAAACACTGTTGCTATAAGCAGCCACACCTTTTTACCCTTAAAATTATAAAGATGGTATCCGGCGATAATAAGCGTGACATAAAACAGCAGTGAATTAGCGCTGACGCCGAGCATCTGATAATCTATCGTGCTATGAGTAATATA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 5 2771313-2770385 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046509.1 Erwinia sp. J780 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2771312 28 100.0 32 ............................ CAACGTGGTCAGGAAAGCTGACGGCAGGTAGG 2771252 28 100.0 32 ............................ GTCATCGCTCAATATTGGCACCGGTGCTACTC 2771192 28 100.0 32 ............................ TTCAAATACAACGTTCAGCATGTCGGCATCGA 2771132 28 100.0 32 ............................ CGATACGCGCTTCCCCGTTTCCGCGCTGAGGA 2771072 28 100.0 32 ............................ AGGGGATGTATTCTGTGGAGCAGACGGGGCAT 2771012 28 100.0 32 ............................ GTGATTAAGCCAGTTGTGAACGATGTCGCCAA 2770952 28 100.0 32 ............................ GGGCAGGGCTGGTTCGCTTACGTGCATGTGCT 2770892 28 100.0 32 ............................ TGTTCCTGGCTTCTGCCGAGCTGTCAGCGGTA 2770832 28 100.0 32 ............................ TTACTCACAACACCCCTTTGCGCGAAATCGCC 2770772 28 100.0 32 ............................ ACTCGCTATTAGCTGCGCCGAAGGCCGCCAGC 2770712 28 100.0 32 ............................ ACTAACGTCGCGAAGGGCGTTGCGTGGGTCGA 2770652 28 96.4 32 .........T.................. TGCTGTAATGTTTCATCGAAAGCACCAAAAAC 2770592 28 100.0 32 ............................ CGATGAAACCATCGCGCTCACATCATTCTTTC 2770532 28 100.0 32 ............................ GCCGTGCAGACGCGCGGCGTGCCAAACGGCCA 2770472 28 100.0 32 ............................ AGTTTCCACGGCCAACGCCCCGCAGGGGTGTT 2770412 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 16 28 99.8 32 GTTCACTGCCGCACAGGCAGCTTAGAAG # Left flank : AACGCAGACGGAATCCCGTGCTCAGGCGCAGGATTTCCAGATGGGTAAAGAGGGCGTTTCACTGAATGACGTGATGGTTGATATGCAGAAGTCCAGCGTGTCGATGCAGATGGGGATTCAGGTGCGCAACAAGCTGGTCAGCGCCTATAGCGAAATTATGAATATGCAGGTGTAGTTCAGATACATTTTTTGCGTAAGAAGCAATATATCTCCCGAAAACAGTGTGACTCGCTGATACCAGAGTGTCTGGTTTGGCTGGCGAAGTTCCGCGGGGGTAGCTGCCAGCTGGTGCTTAAGGTCTGCTGCCGGTTTATGCCCCCCCCCCGCGCGGGTAAAAGACGCCGCCATGCGAGCCTCAGTGTTATTCAGACCCTCTTTTTTAGCATGTTTTTATCTGTTTGATTATTATCACTATTTTTATAATGGTTAAAAAGAGGGTCTGGACGAGGAAATAAGGTAAAAAGCTAAGGAAGTAAACGGGTTAGCGAGGTAAGATAACG # Right flank : AGATCTACGATCTATGGGCGGTAAAACCCTTACTTGTGGGCGCCCAGCTTTTGAGTTTCAATTCAGGAGTGAGGGCGTTGTTACTGCGCTTCACGCTTCTGCTTAAGGTATGCAGAAAGCCAGATGAGAAACTCCACCGGGGAAGGGCGGAGATAGGACATGCCGCCGCAGAATTTTTCCAGGGCGGGCTTCGCTGAACTGTTATCAGGATAGCAGGCTAAAAAATCATCGACTTCAACAATAAGTTGCTCATCAACGCCATCCTGAAAAACAACGTATGCATCAATAATCTCCTGGTAAGTCTCACCCCATACTTCGGCATCCTGACCAAAGAATATTTTGAAAAAAAGTCTCATCGATTCGTATTTTTTCATTGGGTCTAATCCAGAACAGGAAATGCGGTAAGAATATAATATGGACGATTATTATATTGTTTTTTATAAAGCACAAATTCCAGCTTATTAGTTTCAACCCGCTTTCCTGAGCGCACTTTGATAACG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 6 3810511-3809767 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046509.1 Erwinia sp. J780 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3810510 28 100.0 32 ............................ AATCAGCAGTATGCGTAAAGTGGACTGGGAAA 3810450 28 100.0 32 ............................ TTGGTCAGAGGCAGGAGCGGCTTAACCGCATC 3810390 28 100.0 32 ............................ AACTGGAAGCGGCAGTACGTGAGCGCGACGAG 3810330 28 100.0 32 ............................ GGTATCGATAGCCGAGGGCTTCCTATCACGCA 3810270 28 100.0 32 ............................ GAACGAGTCCTTGATCTGCCCGCCCTGCTGAA 3810210 28 100.0 32 ............................ CCCACCTGAGCATGAGCAGCCTGCCGCTGATT 3810150 28 100.0 32 ............................ TCATGCGGCGTTAATTTTTATCGCGGTGACGC 3810090 28 100.0 31 ............................ ATGACCCATGTAAGTGTGGGCGATGTGCCGA 3810031 28 100.0 33 ............................ TGGCGCATCGTAACAGGGCACGAAGACTAGGAT 3809970 28 100.0 32 ............................ AAAGTCTCACTCCAATGGCTCAGAAAGTAACA 3809910 28 100.0 33 ............................ TGAAATAATCCAGCCCTTATCCTTGCTGCTTTC 3809849 28 96.4 27 ...........T................ GTCAGTATCACCGTCGGCCATAATGGC 3809794 28 82.1 0 T..........TG...........A..A | ========== ====== ====== ====== ============================ ================================= ================== 13 28 98.3 32 GTTCACTGCCGCACAGGCAGCTTAGAAG # Left flank : CGGTAATATGGCTGGGATGGATCATGGCAATATGTCCGGAATGAAACACGGCGATATGGCTGGGACTGATCATGGCAATATGGCCGGAATGAAACACGGTGATATGGCTGGGATGAATCACGGTAAGCCAGCCAAAGAATATGATTTCCATGATGGAAACCGTATTAACGGCGTTGCATTTAATATGGATAAACCGTCGTTTGAGGCAAAGCAGGGTGAATATGAAAAATGGACTATCTCCGGTGAGGGCGACATGATGCTGCACCCATTCCATGTTCACGGCACCCAGTTCCGCATTCTTTCTGAAAACGGAAAACCCCCGGCGGCCCACCGCAGCGGCTGGAAGGATATCGTTGAGGTAGAGGGCGCGCGCAGCGAAGTGCTGGTGCGTTTTAACCATAAAGCTGATGCTGCTAATGCCTATATGGCGCACTGCCATCTGCTTGAGCATGAAGATACCGGCATGATGCTGGGCTTTACTGTAGCGTAATTTTTATTAC # Right flank : ACATCGGGGCGAACGCCCCATAGATGTTAATGTCTCTGTGATTTTTGTCGCCCCGATCTGTCCTGCCTTCCCCATATCGTTTTTTTCAGTGATTTTTGATTATATCGGGGCGCACTCATTGTTATTTTTATTATTTCAGCTTAAATGACAGCCAGGATATTGAGGTGTTGATATTCAAAAATATGTGGCTGGTATGTTGTTTAATTTCGTGGTTGTTGGTTCGGTGTTGATTTTTTATTTAAATGAATGCGTGGAAGTAATTTCTGACAAGGATGACCAGATTGAAATCGATTACACCTTCGGATTTAAAAACCATTCTACACTCTAAGCGTAGCAATATTTATTACCTGCAATATTGTCGTGTGCTGGTTAATGGCGGGCGGGTTGAGTATGTGACCGATGAAGGTAAACAATCTTTATACTGGAATATCCCGATAGCTAACACCACCGTGGTGATGCTGGGAACCGGTACTTCAGTGACTCAGGCGGCCATGCGTGAG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //