Array 1 1123868-1120931 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGSQ01000003.1 Avibacterium gallinarum strain NCTC11188, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ========================================================================= ================== 1123867 32 100.0 35 ................................ TTATTTCTTTGCAAGAATTGAAGATCTGTTTTTTC 1123800 32 100.0 33 ................................ GGCTTGTAAAGTTAAATAATAACTTTTGCAGGG 1123735 32 100.0 34 ................................ AAGAGTCATTGCAATATTGCCTTTTAATTTGATA 1123669 32 100.0 33 ................................ GTTTTGAGTGTTAAAAGTTAAAAATTGCCATTT 1123604 32 100.0 35 ................................ GATGACCCTATCGCATTCCAGCCTTTCAGGTCTTA 1123537 32 100.0 34 ................................ AAACCTTAACACGTCAAAACCTAAAAAATTTTTA 1123471 32 100.0 34 ................................ CCGTTATCAACTTAAGCATCAGAAAACAGCTGTT 1123405 32 100.0 36 ................................ CCTCGGGTATCTAATCCTTTAGATAGTCTTTTGATG 1123337 32 100.0 35 ................................ TAGTATGGATATTTAGATGAGGACTATAGATGCAA 1123270 32 100.0 35 ................................ CCATAGGGGGGTGTGCCGCCCTACCGTTCAACCGC 1123203 32 100.0 36 ................................ ACGCCTTGCAATTGTGCAGAAGATATGCTCTTTAAC 1123135 32 100.0 35 ................................ GTCAATACCCAAAAACTAAATTTCTAAAAATTTTT 1123068 32 100.0 36 ................................ TAAATAGATAACGAAAAAAACTATAAAACAGTGTAA 1123000 32 100.0 35 ................................ AAGCATCAGAAAACAGCTGTTTTTTAATTAGATAA 1122933 32 100.0 35 ................................ TTGTTCGCTTGTTTTTTGTACAATTTCCATCTTTT 1122866 32 100.0 34 ................................ CCGTTATCAATCCAAGCATCAGAAAACAGCTGTT 1122800 32 100.0 37 ................................ ATAGGATGATACTTCACCGCCTGTCGATCCCACATAC 1122731 32 100.0 34 ................................ CCGTTATCAACCCAAGCATCAGAAAACAGCTGTT 1122665 32 100.0 34 ................................ AATTGCCAAGCCGTGCAAATTTTGCGAGATTTTT 1122599 32 100.0 34 ................................ GTTATCTATTAAAAAAACAGCTGTTTTCTGATGC 1122533 32 100.0 36 ................................ TTAGGGCTGGCAATCCCCGCAAGGATTGTACCTAGG 1122465 32 100.0 35 ................................ AGCTTGCAAAGTTAAATATTAACTTTTTATTGGGT 1122398 32 100.0 34 ................................ ACAGCACGGATCGGCTTTTCCTTTCTATTTTAGC 1122332 32 100.0 37 ................................ AGAATAGGCATTCTTTCAACAAGAGGCTATTTCTTGC 1122263 32 100.0 35 ................................ CATTTCCAGCTTTTCAATGCCAAGATCGATGGCAA 1122196 32 100.0 35 ................................ TTAAGTCTGGGCGTAATATATTAATGTAATATAAA 1122129 32 100.0 35 ................................ AAAATCAGATTTTATTAAGTGATGAGCGAACAAGA 1122062 32 100.0 35 ................................ GCCTTTTGTTAGGGTCGCGATATGCTCGCCCACGT 1121995 32 100.0 35 ................................ TCTCATTTCGTGCCTTTATTATATTTTATTCTGTC 1121928 32 100.0 35 ................................ AAGAGGCAACAAATAATGGCAATTATAATTGATAA 1121861 32 100.0 35 ................................ TAAACATCCTATCATCAACACAAAAGCAAAAAAGG 1121794 32 100.0 36 ................................ AAGAGGCAACAAAAAACGGCAAGTAGAATAGATAAC 1121726 32 100.0 34 ................................ TCTTGGTGAGCAAATGGCGGTGATTGGTCAGCTT 1121660 32 100.0 34 ................................ ATCAATAATAAATAATGTTTTATCATACCTCGTT 1121594 32 96.9 33 ..........A..................... ATCTTCACGTTGTAATCGCCCTTTTTTGCCTAA 1121529 32 96.9 33 ..........A..................... TGCAGGCGGACACTGTTTTTATGCGTCCAGCGA 1121464 32 96.9 35 ..........A..................... GTGGACAAAATGTAAGCCCCGACCAAATGACTGCC 1121397 32 96.9 73 ..........A..................... AATGGCAAGCGTTGTATCAATTATTGCGTGAATTGAAACAATATCCTTGTTGGCTTTGTTGATGTTACTGCGT 1121292 32 96.9 34 ..........A..................... GCTGTTTTTGGCTCTCGACCGCCCTACCAAAAAT 1121226 32 96.9 33 ..........A..................... AACCCAATTTCTCGCCGTGATATTAATTTAGAT 1121161 32 96.9 34 ...T............................ TACTTTACTCTTTCCCCACACAGAGCAATGATGT 1121095 32 100.0 34 ................................ ATTACCTCTCGTTGCGTTAGCCCGATATAATCTT 1121029 31 93.8 36 ...........................-...G AACATTCACATCCGCTACTCTAGAGAAAGCCATTAC 1120962 32 75.0 0 ...TT...C.TT....A...C........C.. | ========== ====== ====== ====== ================================ ========================================================================= ================== 44 32 98.8 36 CGGCCATCTCCCAGATGGCCGTGAATTGAAAC # Left flank : TGCGTTAGGATAACAATATGTTAATGCTGATTACTTATGATATTTCTCTTGATGATCCACAAGGTCAAGCGCGTTTGCGTCGTATTGCGAAACATTGTCTTGATTATGGTGTTCGCGTGCAATATTCCGTGTTTGAATGTGATATTGCCCCAGATCAATGGGTAGTATTAAAATCCAAACTATTGGATACTTATAACCCTGAAACTGATAGTTTGCGCTTTTACCATTTAGGAAGTAAATGGCGCAGAAAAGTAGAGCATCACGGTGCCAAACCATCAATTGACATTTTCCAAGATGCCATAATTCTATAATCGCTAACCTATTGTTCTCATCAAATCCCTGCTAGCTTAGCGAAGTATCATTGTTCTTTAAAAATCAAATAATTAATTCTGAATTTTATTTAGCAATGATTATGCTATAATCTATCTTCGCACAGAAAAGAATGATTAGCGAAATACCAAGGTTAATACCTTATTTTTGTTATATTTTTTCCCTGTGCT # Right flank : ATTGTAACTAAGAACACTATTAATCTTTATACAAAAAGTAGTAATCATTTATTCCCATTTTAGTTTTTAATGTTCTCTTGTTTTAAAGAACGCGACATCAGGATAACGATCTTGGGCAAGATTGAGATTGACCATTGTTGGCGCAATATAAGTGAGATTATCTCCCCCATCTAGCGCAAGGTTTTGTTCATTTTTGCGTTTAAATTCTTCGAATTTCTTCGCATCATCACATTCCACCCAACGGGCAGTGGCAACATTTACGGTTTCGTAAATGGCTTCCACGTTATATTCCGATTTTAAGCGCGCAACTACCACATCAAACTGTAGCACCCCAACCGCACCAACAATTAAATCATTATTAGTTAATGGGCGGAAAACTTGCACCGCACCTTCCTCGGAAAGCTGCACCAAACCTTTGAGCAATTGCTTTTGTTTGAGTGGATCTTTAAGACGAATGCGGCGGAATAATTCTGGCGCAAAGTTTGGAATGCCAGTGAATT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGGCCATCTCCCAGATGGCCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : NA //