Array 1 360316-362995 **** Predicted by CRISPRDetect 2.4 *** >NZ_WQLG01000001.1 Listeria monocytogenes strain Lmo5304 NODE_1_length_368276_cov_93.391312, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 360316 36 100.0 30 .................................... GGCGATTCTGTTGAAACTGCAACGAAACTT 360382 36 100.0 30 .................................... CCACGTCAGACCAAGAACTTAAAACTATGC 360448 36 100.0 30 .................................... CTAAATTCATGTTGCGGGATGTTGTGGATG 360514 36 100.0 30 .................................... GAACTTCTTCACCATCCTTCATTTCTGTTT 360580 36 100.0 30 .................................... TCAGACTTCTATATCCACAATAAAAGCCCT 360646 36 100.0 30 .................................... GCGAGTCAATTCATCAAACCCAATCAGAAA 360712 36 100.0 30 .................................... GTGTACACGATAGTCCAAGTCGGTATTTCC 360778 36 100.0 31 .................................... CTCACGTTGTCAAGGTCAAATTTTAGATATG 360845 36 100.0 30 .................................... GAGGTTCGTGGGGGTAATCCCGGCTTGCGA 360911 36 100.0 30 .................................... AGAGGCAACGAGACTACAGACGCACTTAGA 360977 36 100.0 30 .................................... TTTGGTCGAATTCTTCCGCATCTTTAAACT 361043 36 100.0 30 .................................... TTAATGAAGAACTAGAAACAATTGAAAACA 361109 36 100.0 30 .................................... GCACGTATGATCGTCTTCTTTGATGACCTC 361175 36 100.0 30 .................................... TACTCGTATAAAAATCAAGAGAGACGTATT 361241 36 100.0 30 .................................... CTTCCGCGTTACATGTTTGACATCAAGTAA 361307 36 100.0 30 .................................... GGTTGTGCCGTCACCCGTTGGTGGTAGGCT 361373 36 100.0 30 .................................... TTTTCTTTTTCACGATGCGATCGAACGTTT 361439 36 100.0 30 .................................... AGTGCAATATTTAGCGTACACATCTTTTAC 361505 36 100.0 30 .................................... TTGGTCAATAGATGACTGTATTTCTTGCTC 361571 36 100.0 30 .................................... TGAAACACACAACATTTCAGAATGGCTTAG 361637 36 100.0 30 .................................... ACTTACTGAACAACATTGATTACCACAGTT 361703 36 100.0 30 .................................... TAATAAACAAGAAATATTACTTCATGAATC 361769 36 100.0 30 .................................... CACTATCCACTACAGTGATTTGTATTGTGC 361835 36 100.0 30 .................................... GTAATCCCAATTAACCCCGCAGAGGGTGTA 361901 36 100.0 30 .................................... TGTCATGGCGAAAGGTAAAACGGTCGATTG 361967 36 100.0 30 .................................... AGTGTTGGAGACTGCAAGGATTTCCGGATT 362033 36 100.0 30 .................................... AACCTGCAGGTGCTGTGTTCACGTCAGCAA 362099 36 100.0 30 .................................... TTGATGAGAATCTATACAGGTACTTAACCG 362165 36 100.0 30 .................................... TGTTGTCAAAGATGGTAATAAATGGGTGAC 362231 36 100.0 30 .................................... TGTTGTCAAAGATGGTAATAAATGGGTGAC 362297 36 100.0 30 .................................... CATCGAATTGATACTTTTCGAGTGAAGCAA 362363 36 100.0 30 .................................... GTGGGAAACGTTAAATATTATAAAACAGAT 362429 36 100.0 30 .................................... GCATCGTACCCCAGTTCATGAAGCGCGGTA 362495 36 100.0 30 .................................... ACAAAACTCTCTAATTCAATTGCTCCATCA 362561 36 100.0 30 .................................... TTTATAAAGAATACTTGCGGGGCATAAATG 362627 36 100.0 30 .................................... GTCTAAACTTGGAATATAACTTAGGTCTTG 362693 36 100.0 30 .................................... ACTGATGAAAGTATTTCTCCAATGACAAGT 362759 36 100.0 30 .................................... TTAAATACGATGGAATTAATCTATCGATGC 362825 36 100.0 30 .................................... TCAAAGAGTTTATACCTGTTTTGATTGAGT 362891 36 100.0 30 .................................... TAATATTCTTCCCCCCCATCGCTAACAGGG 362957 36 86.1 0 .............A.....C.....T.A.......G | A,A,C [362982,362988,362991] ========== ====== ====== ====== ==================================== =============================== ================== 41 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCACTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCACTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATCTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAGTTTAAAAATCTTGTATGATTATATTCTAAATACGAGTAAAGATAATGACACGCTTGAACTATATACTGCTTGGAAAAGCGAGGAAGATTTCCTGCTATTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGATAGAGAACTATTAGTAATTAAAAAAGAAAACCGATATAACTTTTAGCACCATTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //