Array 1 54935-56368 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP065036.1 Pectobacterium parmentieri strain PB20 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 54935 29 100.0 32 ............................. TGAATAAATAACAGAAAACTTTCGAAAACGAG 54996 29 100.0 32 ............................. GGATTAATTTTCATTGAGGATTAAACAATGGC 55057 29 100.0 32 ............................. CAGATCGTTAGTATTGGAAAAGAAATAGCTAT 55118 29 100.0 32 ............................. TATCTACTGAAACGACAAACCCGATTTCAGTG 55179 29 100.0 32 ............................. AATTTTCAACTCTTATGTCATTTGTTACTGGT 55240 29 100.0 32 ............................. CATTTACCCGACAGGAATAAATAATATGGCGA 55301 29 100.0 32 ............................. CAACTTGCTTAGCTAAATGCGCTAGCTCGTCG 55362 29 100.0 32 ............................. CTACGGTAAATCCATGATTAGCCGCGCGGACA 55423 29 100.0 32 ............................. CAATTGCTGGCAGAAACCAAATCCGGACGCCA 55484 29 100.0 32 ............................. CCCCCTGTAATGCGCGTCAATCTCGCTTTCCG 55545 29 100.0 32 ............................. ATAATCATTACGTCTCGCTTGGCATATTCTAT 55606 29 100.0 32 ............................. TCCGGGTATGCACATAGTCATTTTCTCCTGTG 55667 29 100.0 33 ............................. CATTCATCAGGCAGCGTGCGCGGCAGCTCTACT 55729 29 100.0 32 ............................. ATTCAATTTCCGCACTGATCGCTGAGGTCGTG 55790 29 100.0 32 ............................. GCGAGGATGGCAGTGATGCCCATACGCCGCCC 55851 29 100.0 32 ............................. GGCTAACGCGCACCTATTTTTCTACACCGTCA 55912 29 100.0 32 ............................. GTGTTCATTGCGTTGTAGCTCCTTTGGATAGT 55973 29 100.0 32 ............................. GAACGTAGACCTGTCGCCGTTAATCCATCCAG 56034 29 100.0 32 ............................. ATTGTTATGGGTTAACAGTAGAGGATTTGGGC 56095 29 100.0 32 ............................. TGCGCCTGAATTGGCTTTAAGCGGTGTTGCGA 56156 29 100.0 32 ............................. TACATAATCACAGTCGGCGTACAGCAACGCAT 56217 29 100.0 33 ............................. TGCTAATTTGTAACCTTCCGGTATTACCGGAGA 56279 29 100.0 32 ............................. TTCCAACCCTTTCAGCAAGCTCTACCTGAGTA 56340 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================= ================== 24 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAAGAGGTATTGTCTGCGGGAGGGATTACGCCACCGCTGCCACCGGACGATGCTCAGCCGCCTGCGATCCCTGAACCGAAACCGTTTGGTGACAGCGGCCACCGAGGACAGGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTTCCGCCGCGTTTACGCGGCAGGCTGGCGGTGTGGTTGCTGGAGGTTCGTGCGGGTGTTTATGTGGGTGACACCTCGCAGCGGGTGAGGGAGATGGTCTGGCAGCAGATTATCGAACTGGCAGAACAGGGCAACGTGGTAATGGCGTGGGCGACGAATACGGAGTCCGGTTTTGAATTCCAAACCTGGGGTGAAAATCGCCGAATGCCGGTAGATCTGGATGGCCTGCGGTTAGTCTCTTTCTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTGGGATTTTTTCTACCGAAAAAAGTGTTATAAAACAACTCTCTACTTTTAGA # Right flank : CTAATCCGTGGAAGCGGCTACAGGATTAGCTGTTCTGGTTCGCAGTGGTACAGCTTAGCCAGCTTTTCTCGGGTGCGCTTCTGCGGCCTTGAATCTGGGGATTCAAGCTGAGAGACGGCCGCTTGGGTTATGCCAAGCGCGGTTGCAACTTCTTGCTGAGAGAAGCCTCTGAAAATTCTCCAGGCTGCCTGTAAGCTGACGTCTTGATCAATGTGGATGCTAACCACTTCATGAGGAATAGAGACGTCATCCTCTGCGCTATGATCGTAGGGAATGCTCTCATAGAGGGCGGGGTCGTCAGCATTTTCAATAAGTTTCTGATATAACTCGTACGGAACAACAGCATATTCAGGTTTACCGCTTTTATCCCGAATGACTTGTATGCTCATAGTGTATTGCTCCAACATTTTCTTTCGATGGGTGAAAATCAGTTGTGGTGTAAAGAAGGACGCATTTTCCTCCTCAATATGTCGTCGTTGTCCTGCGTTTGATTTCAAGTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 58145-58844 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP065036.1 Pectobacterium parmentieri strain PB20 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 58145 29 100.0 32 ............................. ACGCCCCTGATTTGAGCGAATCATGCTGATTC 58206 29 100.0 32 ............................. CCGTGCTCAATCGGTATTGCGTGCGTGTTCTC 58267 29 100.0 32 ............................. GAGGAATCAAAGGCATCTGTCGCGCTGCATAA 58328 29 100.0 32 ............................. ATCACCTGTTAGCGGCTGCTTTTCAGGATCTA 58389 29 100.0 32 ............................. GCTCGCTGTTCGTGGTTGGTGCGAGGCCAAAA 58450 29 100.0 32 ............................. TTAATAAAAAAAGAGCAAGTGAGGGGATACCC 58511 29 100.0 32 ............................. ATAATATAAAAACATTGAGAGGCTATGATGTA 58572 29 100.0 32 ............................. CCCCGCAATTACACTTATGCGCCGATCTGGAG 58633 29 100.0 32 ............................. TACGGATGATTTAGCGAAATTAACAACAATTA 58694 29 100.0 32 ............................. CTGTGCTCAGTGCGTCGAGAAATACCGCTGAT 58755 29 100.0 32 ............................. ATTGGGGTTATCTGAAAGAACGGCCAGCCTAA 58816 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 12 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTTTGTAGCTTTCAACGAGCGTATTAAAGCGCTCCCTGCTGGTATCGCTTTGCTGCGCATACTTATGGATCAGCATGGGCTAACGCAAAGTGACTTTGAAGCTGAGATCGGTAAAAAATCTCTGGTATCCCGAATTCTAAATGGTGAGCGTACACTAACGGTTGATCACATGAGCGCACTTGCTAAACGATTTGATATTCCCGTGAGTGCTTTTGTTGATTAGTACGATTTTTGCCAAGTACAGCATGATGCGTCATGTAATAAAGACTGCCGTGCTGGACTGTTATCTGAATAATCCCTGCGTTAGCAGGGATTACTTTATGGCTGAGACGCATTGTAAGAAATTATTGAAAGGAATGCCGGTAGATCTGGACGGCCTGCTGTTAGCCTCTTTTTCATCTATTGAAAATCAATAAGTTGGCGATATTTAACAACATGGAAAAATCGGTGGGATTTTCTCTACTGAAAAAAGTTTTATAAAACAAACCTCTACTTTTAGA # Right flank : GTACCACGCGGGATTCATCTTTAATCCGACTGAGTGTTCCCCGCATGCGGACAAATCCCGCTTCTAGCTGGCGCGATGGCAAATTGCGTGTCAGTATTACAGAACGCTGTTTTTGTGCTCACCGTACTGGTGCGGCACGATATCCATAATTTTTTGTCTTCCATACGTTACCCGTAAGGAGGTGGTATGAAAGTTGAAGCCGCAGAGTCCTCCGTTTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCCACAGAGCATGCGGAGAAAGTGGCGCTGTCCGAACAGCTTCAGCCTTATCAGGCGGGCAGCGGTGCCGTTCCTGCTGGTCAGACGACACGCTATGATTTTACCCGCATCAGCCCTGCCGAACTGTATGAAACGGTAGAAGGTCTTGTCAGCAGCGGACAACTGGGGCGCGAAGAGGGCTCCGCACTGCTGGGTTTTATTTCGTCGCCGCGAGAGAATATCGGCAGTGTGCCGCCTTCTAATGTGTTCCAGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 3370802-3372210 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP065036.1 Pectobacterium parmentieri strain PB20 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3370802 28 100.0 32 ............................ ATCCGCTGGTTTAAATTCAATCGAGCCAGTAA 3370862 28 100.0 32 ............................ ATCTAGGCTTAATTGCGGTTTGAACACTACGC 3370922 28 100.0 32 ............................ ACACCGATCGGCGGCATCACCGCCGTCATCAA 3370982 28 100.0 32 ............................ CACCCATCCGTGATATAATCCCCATCATAACC 3371042 28 100.0 32 ............................ AGAGGTTAGATTGACGAACTCGCCATTTAAAT 3371102 28 100.0 32 ............................ ATCAACGAAACCCTCGCAATATTCATCACTTC 3371162 28 100.0 32 ............................ TGAGCCAGCAATCAGCAACCTACGCGGCAAGC 3371222 28 100.0 32 ............................ GGGTGTAAATGCCGAAACAGCCCCCGCAGTTA 3371282 28 100.0 32 ............................ GCGAAATCCCACCGCTCAAATAAAAAAGGCTA 3371342 28 100.0 32 ............................ GCCCGGTGCCTGCGGCGGTGCCAGTACCACAC 3371402 28 100.0 32 ............................ GAATGGCCCAACTACAGCATATGCAGTTCCAG 3371462 28 100.0 32 ............................ TGGATCAACAGCGCCGAGTATCGACCAATCAT 3371522 28 100.0 32 ............................ TAAATGAAACAGAGGGTGTATTTACTGAGCCA 3371582 28 100.0 32 ............................ TTTGCAGTGTATGACCAGTTAGCAACAGAACT 3371642 28 100.0 32 ............................ GTTCAGCCATCTTCTTTCTCCTGTTTCAGTAA 3371702 28 100.0 32 ............................ AACTCCCCCCGGCGGTCGAGTGACTTGCTCTA 3371762 28 100.0 32 ............................ TCATCGACCACGTCGCAGCCCTTGAGCAGCAG 3371822 28 100.0 32 ............................ GCGCCCAAGCAATGTCGGAACGACGCCAAAAA 3371882 28 100.0 32 ............................ AGACGACGCCGACGAGGTAAAGCACATCATTC 3371942 28 100.0 32 ............................ AAGCCAGCCGTATTGAACAGCACTGATCCCAC 3372002 28 100.0 32 ............................ AAATCGGGATTGCTGAAATCCAGAAATCAATC 3372062 28 100.0 32 ............................ ATCTGCATCAAAATAGTTAGTACTGGTATATC 3372122 28 100.0 32 ............................ GGGCGCGCTGTCATGCTGCGCATCGAGCCAGC 3372182 28 85.7 0 A...........GC..........A... | G [3372207] ========== ====== ====== ====== ============================ ================================ ================== 24 28 99.4 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CGCCTGGCGAACTGCATGTTTCCATATTGGTGGGCGTAGCGATGACCACTATCGGCATCGTGAAATATCGGCACGCCCAGCACAATTCGAGACCTCATAGCCCAGTGCGGAGCAAAACCGTTACCCAAAAAACGCTCTCCACAAAAACAATCACCGCCAAAACAATCGCCGCATTCGTACTGATCGCGCTTTATCTGGTACTCCCACTGCATCTCTATCTGCGTGAACCTTTACCCTACTGCGCCTTTAGCCCCAGCGGGCAGCAGCTAAGTATCTGTCTGGGAGAGGATGACGAACGGATCATTGTGGAGTGATGCAGATTGGAACAGGCCGAGACAAAGAATAAAATCTACAACGCGCTTCCTCCAAGACCCTTTTTTAACGGCTAGTCGTAATTTACTGATTTTTAATCACCTACAGCCTCGATTGTAAAAAAGGGTTTTTCCGAGAAAACAGGGTATTCGCTTTAATAATCTGGTAATTAGCATAAAACTCTTACG # Right flank : ACAAAACGTTCCGGAAATCAGCGATAAAAAACTCATAGGCAACGCGGCTTAAAAAGCTGGTAGTCTGTTTGACTGACTATCTGACACTGTTTAGGGAACGCGATGTACAACATTGATGATTTCGATCTGAAAATTCTGACGCTGCTGCAAATCAATGGCCGCCTGACCAATCAGGAACTGAGTGAGTTGGTCGGGCTTTCCGCCTCACAGTGCTCCCGCCGCCGCATCGCGCTGGAACAGGCACAACTGATCCTCGGCTATCATGCCCGACTGTCACCGAATGCCGTTGGTCTGGAATGTCTGGGGTTAATTGAGGTGCGGCTGATCAACCACACCAGCGAATACGTTGAACGCTTTCACCAGATGCTAGGGGAAGTGGATGCGATTATCGATGCCTATAAGACGACGGGTGATGCCGATTATCTGTTAAAAGTCGCCGTCGCGGATCTGCCAGGGCTCAGCACGCTGATTAGCCAGATTCTGTCGCAGAACAAGAGTGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 3390299-3395547 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP065036.1 Pectobacterium parmentieri strain PB20 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3390299 28 100.0 32 ............................ TATACTTGGATTTGTCGGTAGGCTGGTAAAAC 3390359 28 100.0 32 ............................ TAATGTCCTTTTTAGGCTAGAACATCGGATTA 3390419 28 100.0 32 ............................ AATGACGCCGGAATCATGCTACTGATTGTTTG 3390479 28 100.0 32 ............................ AGCAACTGCAACGGCGGCGGCTGGTTCTGCGT 3390539 28 100.0 32 ............................ TAATAGGGGTGCACTAGGCTAGCCAATTACAC 3390599 28 100.0 32 ............................ AGTCCGTGCATGAAACAGGTACTAACGGGAAA 3390659 28 100.0 32 ............................ CTGAGATAGCTGAATAATAGCGGCTTCCGCTT 3390719 28 100.0 32 ............................ GTCCTTGTAGACCCATCTGAAAGCGATTTATG 3390779 28 100.0 32 ............................ TGATAAGCCCCGACGATAACGCGGGTTGCCGC 3390839 28 100.0 32 ............................ CTCTGGCGGCGTTTCTGACGGCCACATAATAA 3390899 28 100.0 32 ............................ GTTCCGGCAACACCAGCCGCGCCGATCATTGC 3390959 28 100.0 32 ............................ AGCGTGTCAGCAAATGAAATATTGAGATTGCG 3391019 28 100.0 32 ............................ AACTCTGGCAAGGTCGAAGACTTCAATGACTA 3391079 28 100.0 32 ............................ GAACGGCAATTACGCGAAAACAACCCCGTTCC 3391139 28 100.0 32 ............................ TGCAATACGCACACAAGATCATCGTTTGTATC 3391199 28 100.0 32 ............................ CGGCCGTGGCGTAATTTCTGCCGCGCCGTTGT 3391259 28 100.0 32 ............................ TTTTCCACGCTATCGATCGCAGCTTCAATTAC 3391319 28 100.0 32 ............................ GTGGTGATAAATCAAAAGATCATCCGACACCA 3391379 28 100.0 32 ............................ TCTGCCGCATTGAGAAAATATTCACTGAGGAA 3391439 28 100.0 32 ............................ ATCAGCACCCGTTAGCTCTGTTCGGTTTTTCA 3391499 28 100.0 32 ............................ GCCACTCATCAGCATAAAGGGGAGTAAATGAG 3391559 28 100.0 32 ............................ CGCAACGAAATAGCTTGGCGACACGTCAGCAC 3391619 28 100.0 32 ............................ AGCGAAACGATCCCCCTCACGCGCGTTAACGT 3391679 28 100.0 32 ............................ ACGCTGGATTACGCAAAGTAATGCGTTTCTAG 3391739 28 100.0 32 ............................ AGTAGCATCACGCCATACAGCGCCATCCCACC 3391799 28 100.0 32 ............................ CAGTGCAATCATCAGCAGCAAGTGAGCCGATA 3391859 28 100.0 32 ............................ ATTACGAGACTCTCCGTAAATATATTGCCCCC 3391919 28 100.0 32 ............................ TGAGCAAAAGGCATCAACTGAACAACAAAATA 3391979 28 100.0 32 ............................ ACGCTGGATTACGCAAAGTAATGCGTTTCTAG 3392039 28 100.0 32 ............................ TGCAATACGCACACAAGATCATCGTTTGTATC 3392099 28 100.0 32 ............................ AGATTGAAGGCAATGGATCCAGAAGAAGCACT 3392159 28 100.0 32 ............................ AAGAATGAAAACGCGGTCAGGGTGAACGCTTA 3392219 28 100.0 32 ............................ CGAATTCGTCTACCACAGTTTCGGTTAGACTG 3392279 28 100.0 32 ............................ GCTGGCGCGGGGAAGTATGACTCAGTCGTCCG 3392339 28 100.0 32 ............................ GATAATAACAAACTTAGGCATGTTATTTATCC 3392399 28 100.0 32 ............................ CGCATTTCGGTGATGACCCCGTGAAAGTTTTC 3392459 28 100.0 32 ............................ GCGTCATGGAGAGCCTGAAAAAAGATGGTTTT 3392519 28 100.0 33 ............................ CGCTTGCGCAGAAGTCCAATAAAAATTGGTCGA 3392580 28 100.0 32 ............................ CGTCGCTGTCCCGCTGTGTTAGCTATGACCCG 3392640 28 100.0 32 ............................ GTTGGGCTACAGCACATGAGCAAGCTAGGAAC 3392700 28 100.0 32 ............................ ACTAACACTCCAATAATCGGTGGGGAGCAGAT 3392760 28 100.0 32 ............................ GCCAGATTATCCAGTTACGCGACCAAGAAACC 3392820 28 100.0 32 ............................ GCACCCAGATTGTTGGTTGGCGCTTGGCATTC 3392880 28 100.0 32 ............................ TAACTGGTGGCAATACTCGATCTTGTGGATGC 3392940 28 100.0 32 ............................ AGCACAGAGGCGGCAAAGCTTATATCCAGCCT 3393000 28 100.0 32 ............................ AGATAGCGCGGATATCAAACCGAATCCAGCTA 3393060 28 100.0 32 ............................ AAGCAATGTCGGAACGACGCCAAAAAAAGGCG 3393120 28 100.0 32 ............................ ATCACATCGGTTATCGATAGTGAGTCACTTGC 3393180 28 100.0 32 ............................ AGAACACAAAAAATCGACAGCGAATTCAGGTA 3393240 28 100.0 32 ............................ TCGCAATAGCGGGGCTTATTTTTGGAGATGAA 3393300 28 100.0 32 ............................ GCGCATGTGTCGTCGGCTACGAAGGTCAATCA 3393360 28 100.0 32 ............................ TTCTCTGGTGAGACCATTCCACCATTCAGCCA 3393420 28 100.0 32 ............................ TGAGTGGGCTACATTTACGCACTATCCCTGGC 3393480 28 100.0 32 ............................ AGCAACGTTAGATACAGCGCAGACAGTTACCA 3393540 28 100.0 32 ............................ TCGCAAAAATATCTTGTTTCGCTATTTCGCGG 3393600 28 100.0 32 ............................ CGATGCGATGCCGTTCGCACAGAACCGGCTGA 3393660 28 100.0 32 ............................ AGTGTGCGTAAGCGGAGAAGTTCCCCACCTTT 3393720 28 100.0 32 ............................ AGCCATTTTATGACAGGAACAGCCATAGAATT 3393780 28 100.0 32 ............................ AGCGCATCCTCAAGCGTCGGAACTGGGTCAAT 3393840 28 100.0 32 ............................ TGATAATCAACCGGTGTTCCACTAAACATAAA 3393900 28 100.0 32 ............................ AGTCCGACAAACAGCACCACCCGTTCAACCTC 3393960 28 100.0 32 ............................ ATTTGCCCTGCACTCTCTAGCCATCGATACAT 3394020 28 100.0 32 ............................ AGCAGAGAAGACCTTAAATCTCTTCACATCAT 3394080 28 100.0 32 ............................ TACGGGCAGAGCTGATCGCCAAGTTTGGCCGC 3394140 28 100.0 32 ............................ GCACAGGGCGGCGCGAATGTTTCCCGCGAACT 3394200 28 100.0 32 ............................ AACTAAATCCAGAATTCGCTTTAAATATTTGG 3394260 28 100.0 32 ............................ GGGTTAAATGTCACAGCGAGATTATACGTACC 3394320 28 100.0 32 ............................ GAATTTGCTGCATCAGGCAACAGCATATCAAA 3394380 28 100.0 32 ............................ AATATCCCGATCCTGCTCGTGCTGGTGAAACA 3394440 28 96.4 32 .............T.............. CGCTTGCTGTTTTGTACCTGATGGCATCAGGA 3394500 28 96.4 32 .............T.............. AGTACGTGAAAGATAACGCCCCACCACTGCCT 3394560 28 96.4 32 .............T.............. TCTATACACTTGAAACTGATTACCCAAATCCA 3394620 28 96.4 32 .............T.............. AAAGCTTACCGGAATCGAGTTTTGACCAATGA 3394680 28 96.4 32 .............T.............. ATATAGGCTCAATGATGAATTGTTAGATACCC 3394740 28 96.4 32 .............T.............. TCAATCGTCCCGTCAATCCACCCCTCATACTG 3394800 28 96.4 32 .............T.............. AGCCTGCTAACGATGCGATGGGCGATCTGACC 3394860 28 96.4 32 .............T.............. GGGGAAATTAATCCTTTCTGAGGTAAAGAAAG 3394920 28 96.4 32 .............T.............. GTATAGGCTCAATGATGAATTGTTAGATACCC 3394980 28 96.4 32 .............T.............. ACGCTACAGGTTCTTTCGCCGCCCTGTCATAA 3395040 28 96.4 32 .............T.............. CGATACACGAAAACCCAACGGTGATGATGGCC 3395100 28 96.4 32 .............T.............. CACTTAACGCAGTCGCTATCGCAGCAACCGGC 3395160 28 96.4 32 .............T.............. TCAATACGCTACAGCAGACAGTCGCGACACTG 3395220 28 96.4 32 .............T.............. GCCAGGCGAGGGAGCTGCACCGGACAGCGGGT 3395280 28 100.0 32 ............................ ACCTGATAGAAGTTCATGCTTGTGGAAAGAAT 3395340 28 100.0 32 ............................ TCTAGCCAGTTATGAATTTCAACCGACTTTGA 3395400 28 100.0 32 ............................ ACTGTTATTTCATACGGCACATCAGGTGGCAG 3395460 28 100.0 32 ............................ AGATCACAGTGAACAGGAAAACGATATTCAGC 3395520 28 78.6 0 ............G.......T.C..TGT | ========== ====== ====== ====== ============================ ================================= ================== 88 28 99.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCGTGACGGAGGTGCCGGTTCCCAACATCACAACGCTGGTATTGGCGATGGGAATATTCCAGTACAGCGACTGACTTCCCTCTTCCGTGACATATTCGACACGGCCACCGTTGACGAGAATGCGACAATGCTGAAGATAATAAACATTGGCGCGTTTGGAATGCAGAATTGTTTTTAAGTCCGAAGGGCTAAAAGCGTTATCCATAATGTATTTTCTGCCGCGATCGATAATAGGTGTTGATGCCAGCGAAATTAATCGCAGACTAATTATTTAATAAATAAAATATAATCTTCAGAAAACTAACGAAAATCAGCCTATCACAGATAGCTTGGGAAAATGATGGCTACAAAAAATATTACCCAGATGCAGACCCTTTTTATTTGGTCTATTTCACAGGATTAAAAATCAATGAGTTACAGTTAGGCTGAAAAAAAGGGTTTTTGCGGCAAAAACGGTGATTGCTGCTAATAAAACAAATCGTTAGAGTGATCGGGCTACA # Right flank : TTTATCGAGATAAGTCGCTGGTACGATTCGCTTCAAGGGAGCTATTCCCCATTCAGCGTAACGACCAGCGAGCGGCTACCGCCGTGGTTGCGGTGTTCGCACAGGTAGATACCCTGCCAGGTGCCGATGTTCAGGCATCCGTCGGTGATGGGGAGCGTGAGGCTGTTTCCCAGCAGGCTGCCTTTCAGGTGCGCGGGCATGTCGTCACTGCCTTCATAAATATGGCGGTAGTACGGTTCATCCTCCGGCACTAACCGATTAAAGAAATTCTCGAAATCCTGCCTCACCGTGGGGTCCGCATTCTCATTAATCGTTAGCGCCGCCGAGGTATGTTTGATGAACACATGCATCAGTCCGGCTTTTATCTGACGCAGCGCAGTGACCTGCGCCAGTATTTCATCCGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCGCCCACATGATTTGGCCTCTCGCTATCAGGCTTCGCGTGCCAGAATC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //