Array 1 782-31 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABTWZ010000034.1 Acinetobacter baumannii strain KAB16 MRSN570369_contig00034, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 781 30 100.0 30 .............................. GAAAAAAAGCATCATATTGTTCGGGGCAGG 721 30 96.7 30 ............................A. TTTTTCTGTTAACTCTAAAATACCCTTCCG 661 30 96.7 30 .............................A AAAGTAGAGAGTGGCGGTGATTCACTAAGA 601 30 96.7 30 ............................G. TGTCTGATCCGACAATTTGGCTGAGTACGT 541 30 100.0 30 .............................. GTACAACAATATGACCCGTATCGATGTAAC 481 30 93.3 30 ............................AA CAATTGCCTGAGTGGTATGAGCCACCAGTA 421 30 100.0 30 .............................. TTATTGCTGGGAATGAAACATCAAAGCAAA 361 30 96.7 30 .................T............ CTCATCGTGAAGGTTTTGCAAATATGCCTT 301 30 96.7 30 .............................G TCCGAAATTCAGATGGTGAAGTGACATATG 241 30 100.0 30 .............................. CAACCTACGCAAGTATTATGGGAACTATTT 181 30 96.7 31 ............................G. CTTTATCAGTTACGATGGCATGAGTTTTTGT 120 30 96.7 30 ............................A. AGCACGAGCAAGTTCTTGAGATGCCAAAAA 60 30 96.7 0 ............................A. | ========== ====== ====== ====== ============================== =============================== ================== 13 30 97.5 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : | # Right flank : TATCTCGCAGATTTGGACAAGGTCACGAATA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.49, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [31.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1441-31 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABTWZ010000035.1 Acinetobacter baumannii strain KAB16 MRSN570369_contig00035, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================== ================== 1440 30 96.7 30 .............................C ATCAAAGGCTTTGAGGGTAAGCGCCTTTGG 1380 30 96.7 30 .............................G TTGCGCTGTTTTTGAACGTGTAATTGGATA 1320 30 93.3 30 ............................CC AAAGCGGTTAAGCCTCCAAGATTTGCATAC 1260 30 96.7 30 ............................A. GGTAATACAATTCAATCTCACTACAAGAAT 1200 30 96.7 30 ............................A. ATATTTTACGTGTTGATTCAACTACGGGTG 1140 30 100.0 30 .............................. TGGGGTAACTGGTGCCTTTAAGTTGTTTTG 1080 30 100.0 30 .............................. CCAAAGTCTTGTTCAATATCTTGTTGTTGA 1020 30 100.0 30 .............................. GCTCATCAATACAGCTACAAGAAAATTTGT 960 30 93.3 30 ............................AG CATAAGCATAAAAATTATGTGTGAATATCA 900 30 93.3 30 ............................AA TATGCAACAATAGGAAATTGCTCAGCATCT 840 30 93.3 30 ............................AG TTACATCATTGCTTTTAGTCTTTTCTATCT 780 30 96.7 30 ............................A. GGGCCGCAACCATACGGTCTATGACTTCCA 720 30 96.7 30 .............................C ATGATCATAGCCCTTATAGATATCGTATTT 660 30 96.7 30 ............................C. GCGAAAGCGGGGTTTTTTATTGCCTGAAAT 600 30 93.3 30 ............................GC ATAGGCATTTACTCCCGCTGTGAGTGAAGG 540 30 96.7 30 .............................G TGGCGTAGCGTTTCCAAAGTTGCCCATTGG 480 30 93.3 30 ............................CC AAGCGTGACCAACTCACCAGTTGTCACAGG 420 30 100.0 30 .............................. TTGAAACTTATAGGCTTGGCTTGGGTTATC 360 30 96.7 30 .............................G AAAGGGATTTAAAAGCAGTTACATAAAATT 300 30 96.7 30 .............................G AATTGGATTTCGTAAATCATTGAGCAAGTT 240 30 93.3 30 ............................AG CATCAAGTAGATCAGCAGTTACCTGTTCAG 180 30 100.0 30 .............................. CTGTATTAGTGGCCTTCATGTGCATTAAAA 120 30 96.7 30 ............................A. ACATGCCCACGTTGAAAATCGGGTACCAGT 60 30 96.7 0 ............................G. | ========== ====== ====== ====== ============================== ============================== ================== 24 30 96.4 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : GGCAAATGGCTAGAACGATTCATTGATTATGTACATATCACTCAACCGAGAGAAGTGCCTCGAGCCAAGATTACAGGTTATGCGCATTACTATCGAGTTAATCATAGAATGAGTGTTGAGGAACGTATAGTTCATCAAGCACAACGTCGTAATATTTCTTTGGATCAGGCTAGACAGCATTTTAAACAATATGTTGAGCAACCAGTGGTTGAACCATACGTAAGTTTAAAAAGTCTCAGTGCAAAACGTGAGGAAAATGTAGATCGCCCCTATCGTTTATATATTGGTAAATCACTTGTTGATGAGGCAAGGGATGGGATGTTTGGAACTTATGGACTAAGCCGAATGACAACAGTCCCAGAGTTTTGACCCAATATTTTTTCTATTCTTTAACAGCTCAATAAAATCAATAAGTTACAATAGGTCTTTTTTGATTGGGTAAAATGCCAAAATCCATGATAAACACTTGTTGTAACTTATATTTTTACTATAATTTTATA # Right flank : TATTAAAACTGCTTATAAACTTTCTTAAATC # Questionable array : NO Score: 5.37 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 29900-29089 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABTWZ010000033.1 Acinetobacter baumannii strain KAB16 MRSN570369_contig00033, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 29899 30 100.0 30 .............................. GGATGTGCAATTTGGTCAAGATGTGGGGAG 29839 30 93.3 30 ............................CG AACACGACTTGAACCAAAGTTAGAAAAATA 29779 30 93.3 30 ............................CA ACTAAAAGCTATTTATGGGGGTAAAAATTT 29719 30 96.7 30 .............................G TCATTGGCCGGCCATTCACAACCCCGATAA 29659 30 93.3 31 ............................CC AAAAAATGAGGAAATTGGACAATATCCAACA 29598 30 96.7 30 .............................G TTGAACGAGTTATTCATAAGTGCCCGAAAT 29538 30 93.3 30 ............................AG CGGAAATCTTTTCAAGTGCGTAGGGGATAA 29478 30 100.0 30 .............................. CTCCAAGTAAAGAATAAAACAATATACCGC 29418 30 96.7 30 .............................C AAGGCGATCCACCTCCCGTCACAGTCATTT 29358 30 93.3 30 ...........T.C................ TGCTAAAAGGATTTATGCTTTAAAATACTT 29298 30 86.7 30 .......A.....C...T..........G. TGGCGTACGGATAACGGAAGAAAGCATAAG 29238 30 86.7 30 .......A.........T..........AA ATAACCACGGTTGTGGTAAGTCACTTTTAC 29178 30 80.0 30 .......A.A.....T.T..........GC GTTCAGGTTGAGGAGATGAAGTGATGTGAT 29118 30 70.0 0 ...T...A...T.....T..C...AGCG.. | ========== ====== ====== ====== ============================== =============================== ================== 14 30 91.4 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : ATTGGACAAAGATTATGACTGAGAAAGACGAG # Right flank : AAGATAAAAAAACAAATGATCACTGCTTAGTATTCTTTATCTTTAAATTTTAAAGAAGAAAATATATTCTGAGCTCAAGATATTTAGTGGTGAAATTTTTATGCGCGGTTTATACCTCATTACCAATGATGACCCAATCCAATTATTATTAGAAAAATTAGACGCCGCACTCGCAACCCGTCAAATCGCAATTTTACAGTACCGCCGTAAAAAAGTAGACAAAGCCGACCAACCTGCTGAAGTTGAACAGATCAAACAATTATGTGAAAAATATCAGGTTCCTTTTGTCATTAATGATGACCTAAAACTGGCTGCTCAGTTTGGTTTAGGTGTGCATTTAGGTCAAAGCGATGGCGAAATCACCGATGCAAAATCGCAGTTACCAGAAGGTGTTATTATTGGCCGTACTTGCTTAAACTCATTAGAACTTGCCCAAAAAGCTATTGCCGATGGTGCAACTTATGTTGCCTTTGGTGCGGTTTATGCAACTGCCACTAAAC # Questionable array : NO Score: 5.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.57, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.24, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [20-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //