Array 1 29291-27009 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCOR01000032.1 Candidatus Korarchaeum cryptofilum strain WS Ga0080004_1132230, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ========================================== ================== 29290 24 100.0 42 ........................ GAATCTATATCGAAAATCTGTATCGAAATCCATAACGATCTA 29224 24 100.0 37 ........................ GGCTTCAGAGGGATGGGGCTAATAAACAACGTCTTGC 29163 24 100.0 38 ........................ TCGCTATTGTGTATGTTTTTGAAAAAATTAATTCTTAT 29101 24 100.0 40 ........................ GTAGCACTTCCACTCATGCCCGCGAAAGTAGCACATCCAT 29037 24 100.0 42 ........................ TCATAACTATCATCGGCATCATATTGCTACTCGTTGGTCTGA 28971 24 100.0 39 ........................ AGACTTCGAGAAGGAGGAATTATTGGCTGAGCTGCAAAA 28908 24 100.0 39 ........................ AGATTACCAATCTCTAGAGAGTATCCCTATATACCCCCC 28845 24 100.0 40 ........................ ATTTCCTTACAGCTCTCGTCGCGACTACGGACATAACACC 28781 24 100.0 37 ........................ ATTTTAAAAAGTCTCTCCAAACTTTTTAATAGTAATA 28720 24 100.0 38 ........................ TTATAGACCGACGATAGACTAATCGAACTTGATGAACA 28658 24 100.0 37 ........................ GTACATACAGCAGCTGAGAAGGCAGCTGTGACTTTTA 28597 24 100.0 40 ........................ GAGCTTCAGCTCCTCCGCGACCTCGAGGACCCACCTATCA 28533 24 100.0 39 ........................ TTTTTATGGCCGATTTCTTCGGTTTAAGGAAAATGATTA 28470 24 100.0 39 ........................ TCGCTCCCGAGTCGAGCCCCGCATACATTGATAAAACGT 28407 24 100.0 40 ........................ AGGGCCGCATTAGTCGCTTGTTGCTGTCCCCCTCCTAAAA 28343 24 100.0 39 ........................ TCGCCTGTCAGCAGCCTTATTATCACGCTATCACCATAT 28280 24 100.0 39 ........................ TCTTGAGCCCATACTCAATTTAGGCAGGAGACTCAAGGA 28217 24 100.0 36 ........................ CCATTACTATCTCATGAGTACTCATCTTCGGGAAGA 28157 24 100.0 38 ........................ TTGCGGCTGCGATTATTCGTTTTATATTTTCATCATCT 28095 24 100.0 41 ........................ CAATTATCCGCTTAACTTCGTTCTCGATCTCCTCCTCGACT 28030 24 100.0 40 ........................ CAATCCCTCCAGCACTTGTTCCCTATCCAGTAATGCGTGA 27966 24 100.0 37 ........................ TTGGTATGAATACGAATGTGATGAGCAACCCGCCGCT 27905 24 100.0 35 ........................ GCAACGGGGGCGCTGACGGACTTCTCGGTCGTCAT 27846 24 100.0 39 ........................ TTCACTGTGATCGTCCCATTGAACCAGACTATAGCATAA 27783 24 100.0 39 ........................ GGAATTAACCTGGATCTGAACAAATTCGATTATAACAAG 27720 24 95.8 38 ...C.................... ATCTTGAACGGAGCACGCTGAGGCTATCAGATCCATCA 27658 24 100.0 41 ........................ ACCTAAAATGCGTACACTGCTCTACTGTGACCAAAAGAGCG 27593 24 100.0 37 ........................ TCATTCTCTCCTCTGATCTCTCAATTCTCACTTTCTT 27532 24 100.0 37 ........................ ATTTCTTCTCTATGATGTTCGAAATAATCTTATCTAA 27471 24 100.0 38 ........................ CAATCGCGACTTCAGGAGTAACCGCATAAGTATTCTCA 27409 24 100.0 39 ........................ TCACTAGATCCTGGCCATCACCAGGAGATCCTCATCACT 27346 24 100.0 39 ........................ CTCTTTTTTGATTTCTATTATAACTATTGTTATATCCGT 27283 24 100.0 42 ........................ ATACATTTAGAGTGCGCGCAAAAGGAGTCTTACATTTTTATG 27217 24 100.0 38 ........................ ATTTAGCGAAAATAAGCTGAGAAAATGAGAAATTTGGG 27155 24 100.0 39 ........................ GCTCTCTTTTTAGCGGCAACATATTCGTCGAGAGAAGCG 27092 24 100.0 36 ........................ CTAAGCTTAGCCAAGCGCCCTGCCGCCTTTTTGTCC 27032 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ========================================== ================== 37 24 99.9 39 GAATCCCGGAAAGGGAGTTGAAAG # Left flank : TCTAGCCCCGCACTCAAGACCTCACCCG # Right flank : TCTCGAAGATCCTCCTCAAGTCTCTAGAGGTCTGAACAGGTCTCGATGAAAAGAGGATTGAAAGGCTCTCTTGACCGAAAATCCTTTTGGGTAAAATGCCTTTTCATTCGGGATGAGCTCCTAGAAGTTCCGTCCGAAAGCCTCCATATGCGACCCAAATATACGAATCTTTGAGTTACACATGGCTCAAATTTCGTTTAATTCTCTAAAATTTCTGGCCATATACATGCTAAAACTATACCATATTTCCGAAGATCTTCAGTTTCCCTTACCACTCGAAACGCTTAACGAACTCTAAGGTTATATCTGGGTAACAATTCTGTTACCCCGATTGAATGATGCATCTCTACGAGATCAAGGAGCTGTTAGAATCTTCTGGCAGGCTCGTGGTCGATGTGAAGCAGCTTTCCGTCCTGCTGGGGATACCTAGGAGCCATTCGAAGGTTTATGCATCTCGCCTCGTCTCTAAGAATTGGGCCTGGAGGCCGAGGAAGGGCGTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATCCCGGAAAGGGAGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA // Array 1 10669-15705 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCOR01000004.1 Candidatus Korarchaeum cryptofilum strain WS Ga0080004_1072407, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ========================================= ================== 10669 25 100.0 38 ......................... ACCTGTCCCTCCCCTCTTCAATGAATTGTCTTGCCCGA 10732 25 100.0 38 ......................... AGATGCGACGAACAGAGAAATCGTTAAGCTCGTGGATA 10795 25 100.0 39 ......................... ATAATAAGCTTCTCAAGTACTTCCATCACATATTCGTCT 10859 25 100.0 39 ......................... CTCGTTTGCACGACTTTAAGTTGGCCGGCTACGGTGTTC 10923 25 100.0 37 ......................... AGCTGGAATAACACAACTGCTGAATGAAGATGTGTAA 10985 25 100.0 38 ......................... ACGGTTGCATTCGTCGAATCGGAGCTAACTAAGTGGAA 11048 25 100.0 39 ......................... TTCCTCTCTCCCTTCTTCTCCTCATCTTCTCCTTCCCCC 11112 25 100.0 36 ......................... ACTGAGAGCAAAACTTGTTGCGGCGGGCCTGATGGC 11173 25 100.0 38 ......................... ATGGCTTTACTATCGCATTGTACATTTCTCCTTCCTCA 11236 25 100.0 40 ......................... AGAGCTCTCTTCTCCTCCTCACGAATCTTCTCCAGTTTGT 11301 25 100.0 38 ......................... CCTCTCGAGTCAGCTCCAGCTTCTTCTGGGCGAACTGA 11364 25 100.0 37 ......................... GGCTTATCGAGCATTATCCACTTCCCAATGAGCACCA 11426 25 100.0 39 ......................... TTTTTCATGCTCTCACTTCCTCCTTGGGGCTAAGACGAA 11490 25 100.0 37 ......................... CATAATATGCAATAAGATTCTCTAATGGTACGATATA 11552 25 100.0 39 ......................... ATTTTATCCTCAACTCGTTCTTCCTCATCTATAACACCT 11616 25 100.0 38 ......................... CATTCTCATACCCCTGCTGTCCAATGTCCAATCTTGAA 11679 25 100.0 39 ......................... TTTATGCAATAATTACTATATTCGTTTTCACGCGTTGGT 11743 25 100.0 39 ......................... TAGGCTATCGGGTCCAATTCTGGCGATAGAATAGCTAAG 11807 25 100.0 37 ......................... TCTCTACCAGCTCGCTCTGTGCATCGCTAATCATAAC 11869 25 100.0 39 ......................... ACGCGAGAGTTCCCAGGAAATTGCTCGGGAACATGTGAT 11933 25 100.0 38 ......................... TTAATGATCTTCTTCGTCCTCTCAACCCTAAAAGGCAG 11996 25 100.0 39 ......................... CGAACGGATCCAGTCACACCATCCTATCACTTACACACC 12060 25 100.0 38 ......................... CGAACTCGAAGCTCTTAGTCTCACCAGCTCTCATACCA 12123 25 100.0 39 ......................... GTCGTCATGCTCTCACTATCTATACTATACAAGCTTCAA 12187 25 100.0 37 ......................... CTCCGTAAAACGCCTTAAAACTTCGCTACTGAACTCA 12249 25 100.0 39 ......................... ACTCTGCCCTACCGGAAGTCAAAAGTTTAGGTAACTTAT 12313 25 100.0 38 ......................... ATTAAACGTGAAGCCTCTCCACACAATCTCTCAGCATC 12376 25 100.0 35 ......................... TACTTATCAAGCATGTCGAGATACCTGAGCACAAG 12436 25 100.0 39 ......................... AGCTTGTCCTCATACGTTACGGGCTTCTTCCTCTTTTCC 12500 25 100.0 38 ......................... GGAGTTCGACCGCGATATTGTCAGCTGTTATCGTATCC 12563 25 100.0 40 ......................... TCGAATTCGGTCTCGGTAACTGAGAAACGGGTCTTCCTTC 12628 25 100.0 40 ......................... CTCTCTCTTCCTTAAGCTTCCATACGCGGTAGGACATTTT 12693 25 100.0 40 ......................... GATGGCCTCCTTGAGGGACTCATAGTTGTATTTTTCTGTT 12758 25 100.0 40 ......................... GTTAGATAAGGATTACCAGCTAGCAATATGTCAAGATAAG 12823 25 100.0 39 ......................... GAGGGTACAAGTGACGTCAGAGTGTGGCAGGATTTCGAG 12887 25 100.0 40 ......................... TGGATTCAGGCATTTTGAGCTTCGTTAGGAGCGATACTGT 12952 25 100.0 40 ......................... TGAGATAACTGAGAAGGATTTGAGGAGGATAAGGAACATA 13017 25 100.0 38 ......................... ACGAACCATGCGCATTTTTCTCGACAAAAGGCCGCATT 13080 25 100.0 41 ......................... TCCTCCGCGAACAGCTCAATTTCAAATGCACCCGGTGTCTT 13146 25 100.0 39 ......................... ACCGATCTCAGCAATCCGGCTTTTTTTCCGTCCCCCCTC 13210 25 100.0 38 ......................... TTTGGAGCTGTGTAGCCCGTTTTCTTCACATACATCTT 13273 25 100.0 37 ......................... TAAAATGTAAAGATGTGGCAAGCTTTGGAATTGATGA 13335 25 100.0 36 ......................... CCTCAATTTGTACCTCGTACTCAGATACAAGTGGGG 13396 25 100.0 37 ......................... TCTTTTTTCTGATCCTTAAGTAGTATTATAGCAATAG 13458 25 100.0 41 ......................... GGGTTCAAGTCGCTAAGTTTTATTCTCAGTTCTTTTTTCTC 13524 25 100.0 40 ......................... CACACCAGCTTCGTAGTCGGGCCCAGCGATCTCAGTTCTC 13589 25 100.0 39 ......................... TTGATTATATCGTTCTGATACAATTGGGAGAGGAGTTCC 13653 25 100.0 38 ......................... AGTGATGAAATCCTCATCCAGTGGGGCCCGGTGTGGAA 13716 25 100.0 39 ......................... AGGTCGGCCCATGACTCAGCTTCAAGAATAGTATAGTAC 13780 25 100.0 39 ......................... AGTATCTCCTCTCCTCCTCTTCTTCTTCTCGACGTCAAC 13844 25 100.0 38 ......................... GTAAGGGAGGTGGAAGAGGATGGATAAGGAACTATGGC 13907 25 100.0 39 ......................... CGAGTAAAAACTATCGCTTCCGTCCGAGCCGGAAGCATT 13971 25 100.0 36 ......................... ATAAAATCAGCGGAGCCGCGATAACGTCCGGAAAAG 14032 25 100.0 37 ......................... CGGAATTGCGTTAATCCACGCTCAGTGAGCTCTTTCG 14094 25 100.0 40 ......................... TTATAAGCTTTACTCGTATTATGTCGAAGGTGAATTCGAC 14159 25 100.0 39 ......................... ACCCTTACTTCATAATCTGGGATGTGTGGGGAGCTCGTG 14223 25 100.0 40 ......................... CATATGAGCGCCACCGAGACACCCGTCCAGACCCCCCAGC 14288 25 100.0 36 ......................... GGTCTGGATTATACTTATATCTCGTCTCTACTATTA 14349 25 100.0 39 ......................... GTGTTGTAAGTATGACTATATTGATCGCTCTGGTCTTCA 14413 25 100.0 38 ......................... TATGACGCATGAACTTATGACGAAATGCACTAAAGCTT 14476 25 100.0 39 ......................... TCTATTTCCTCCCTCTTATCCATGATCCCACCCGGAAAA 14540 25 100.0 36 ......................... TAATAGGTGTCCGCTGCAACCACGAGGCTGAGTAAG 14601 25 100.0 39 ......................... CTCAATGCCCCCACGACGGGGGCCGGGAGCGGGGTCGGC 14665 25 100.0 39 ......................... AAGAATAAACGGTTTCAATGAGTCGTTTCTCCTCCTGCT 14729 25 100.0 40 ......................... TTAGTAGCGAGTGTACCATAGCTCCAACCACTACTAGATA 14794 25 100.0 40 ......................... CTGGATTCTCGGTCGGCTCTGGTCTCAATGTCTTTACTAT 14859 25 100.0 40 ......................... CTCGGGCGGGATCGGACTTATTGCCAATCCTGTAGCGATC 14924 25 100.0 38 ......................... TAATCACAAGGCGGGATATCTCCTCGTGGGTTCACAGG 14987 25 100.0 38 ......................... TTGTTTGTGAAGGTGAAAGTGATATCCACATTGCTCGG 15050 25 100.0 39 ......................... AGGAAGACATTGAGTTGTTCAGGGAAATCTGCAGGATAA 15114 25 100.0 40 ......................... ATGCCAGCCCTGGAGCCTGGTGGCCTCCCTCTCCTACTTC 15179 25 100.0 37 ......................... ACATATTTTTTATTTTCCTCGAATATAAAGTTAATAA 15241 25 100.0 38 ......................... CCGCCCTCTCCCCCGTTTTTGCCGTTCGTAAATGGCGT 15304 25 100.0 39 ......................... ATGAGCCTCAGGAATGGCCGTTATGAATATGATTTCACT 15368 25 100.0 39 ......................... AGCTTGGGGACGCTCGATATCAAGCTATATACCGTCTCA 15432 25 100.0 37 ......................... TTGTAGACCGCTACCTCCCCGATCCTCCGGTCTTGAA 15494 25 100.0 38 ......................... GGCGGAGAGATTAAAGATGATAAAAACGAAACTTCATC 15557 25 100.0 37 ......................... AGCGTTGAAAAGCGTTGGTTTTCCAGGAATATAATCT 15619 25 96.0 38 ................T........ GTAAGTTAAAAGGACGAGCAAGTTCATGGCGTCCTCCT 15682 24 80.0 0 ..............-.CTG.A.... | ========== ====== ====== ====== ========================= ========================================= ================== 80 25 99.7 38 GTCTCGATGAAAAGAGGATTGAAAG # Left flank : AATTCGGTGATGTTATAGATGAATTTTACAAATTATATTTAGATATATAGGGATATGTTTTATAAGATTAAGAATTTTTTATAAAATGGAGCGTTGGCAATTTTTGTTATCCCTGATGAACTCCTATTGATCATCGATACAGCTCATCTTCAGATGACTTTAAGGAAAAGAGAGCTCCTATTACTCAAATATCCCTAGAATTTACTGACAATATCCCATATACTTCTCAATTATCTCTTATTTCTCGCCATTCTAATATGAAAAGGCGGAGAAGCTCATCTTAATCCCTACAATTGCTCCTCCATAATACGATACCTCTCGAACATTCGAGCCCCTAAAACTATCGTGAAGACAAATTCGACGAAGATATATAAACTTTCCCTCGAACATTCTCGAGATGCCCCTTAAACTTTTCCCTCAGCTGCTTATGTTCGGGGAGGGGGTCCGTGGAAAAGGTTAAATAGAAGTCTTGAGCTACTATATGGATTGTTAGAGTATAG # Right flank : GCATTCAATAACCTCAGTTCACTCATCGAGAAATCAATTGAAAGGATAGAGGCCTATGAAGTTGACTATTCATCTGATAGACCTATGAAAGAGGTCTCTAAGCTTTCGAAGTTTCTTCTAAAGCTAACTGCTGGAGAAAAAAGCATATATGCCTGTCTCAGTGGTGGCATGAGATCTATCATAGCAATAACACTTCTTGCCCTTCTTAAGCTCTCAAGGGATTATTTAAAGGAGATATGGATGGAGATTGACTTCGAAAACCTTCTTGGTTTCTCAAGATTTCCATTAAATGTTATAAATATCCCACGTAATGAGAGATTTATCGCTATATTGGAATCTCTCAGATCATCAAAGCTTTCTGTGAGAAAGATTGGAGAAAAGATAGGACTATCACCGGCAGCAGCCCACAGAATTATGAGAAATATGGTGAAAATTGGTCTCCTAGATGATAATTTTAGGCCTACTGAAATGGGATTAGCTTATCTGAGTCTCTATGAGGA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCGATGAAAAGAGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 9453-6681 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCOR01000039.1 Candidatus Korarchaeum cryptofilum strain WS Ga0080004_1143443, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ====================================================================== ================== 9452 24 100.0 38 ........................ TCATGTTGAGCATAGTAACGTAGAACAGAGTACTGACG 9390 24 100.0 40 ........................ TACCAACACACCTTATTTTATACCTAGTGCACAATATAAG 9326 24 100.0 40 ........................ TCTCTTCCCCCATCTGCCCCCATCAGGTGCTAGCATCTCG 9262 24 100.0 40 ........................ CTCAGATCTAGCCGAAGGGAAGCCCACGAGCTGGAGGGCC 9198 24 100.0 39 ........................ GATTCAGATAATTCCAGGCTCATCCGTGCCCAACTGGAT 9135 24 100.0 40 ........................ GTTCATAGTCGAGGCTAAAAGCCTCTCCAACTTTTTAGGA 9071 24 100.0 42 ........................ TTTACACTAATACGTCCTCTTACAATTTCGTTTTCAGAGCCA 9005 24 100.0 39 ........................ CCCCCCAGGATGCTGATGAGGATTTGACTGATGATAGAC 8942 24 100.0 39 ........................ CGGTCGTCATGCTATCACTACTATACTATACAAGCTTCA 8879 24 100.0 40 ........................ AGATAAGACAGTCGCGTCTATTTTAGAGAAGAAACTCTCG 8815 24 100.0 38 ........................ GCCGATACAGACGATGACTGTGACCCAGACCGTCGCTA 8753 24 100.0 39 ........................ GCAGCACATGTGTATAGTGTAGCTACGCGTTCAACTTCA 8690 24 100.0 39 ........................ ATTCCCCACGCCTTATTGTTGACTTACGGCCCTAAGTCA 8627 24 100.0 39 ........................ GCCAACCGTCTCAATAGCCTCCGTTTCTCCTTCCTCCAT 8564 24 100.0 40 ........................ ACTCTGGCAGCTTTGAGAGTATCTCTTTGATTACTTCCTC 8500 24 100.0 38 ........................ ATCAATATCACCTCGTTTCACAGCGTTTCACAGGTCTT 8438 24 100.0 40 ........................ AAAAGATTGTAGAGGGAGGGGGCGAATGAGACTAGAGCTC 8374 24 100.0 38 ........................ ATATCTGATGAAAAGAATAAAAATGGACCTTTTTGAAA 8312 24 100.0 36 ........................ GTATTGCCAGCCTGAGAGCCCAGCTGCCACGAAATT 8252 24 100.0 39 ........................ CTCTAAAAAATCGAGGAGAGAAACTGATCGAGAGGATTT 8189 24 100.0 38 ........................ TCAATACCCCCGTTGCGGGGGCGACTGGGGAGCGCGGG 8127 24 100.0 39 ........................ CTAATACTTCGCACTTCACCATCTCCTCCCTCTGCTCAA 8064 24 100.0 38 ........................ CTTACTTATCTCTTTCCACGGCCAGCCAAAATCATCTT 8002 24 100.0 37 ........................ TATTTTTGTAACTTGATTTTTCTCTGGTGTGCGGCTG 7941 24 100.0 38 ........................ TTCTAGGATTTGGTATTGTTTCAACCGGCCCCGGCAAA 7879 24 100.0 49 ........................ TTTATCAGGAATTCATTTTCCAGTTATCAGTTCTATCTACCGTTATTAA 7806 24 100.0 40 ........................ AACAGAAATAGAAACCAAAATAACAGATTTAAACGAGATA 7742 24 100.0 39 ........................ CTTATCCATACTATCACCTGAAAAAGAGAAAGAGACGAG 7679 24 100.0 39 ........................ CGCACTTATAATAACTGTAAGTGACGACTGGTCGCGTGG 7616 24 100.0 39 ........................ CTCCCTGATCCCTGGATAAAACAGCAAGGGTTATGGCTC 7553 24 100.0 40 ........................ CTGTTGCCTTCCTACCCCACTTCAGCCTCATATTACTTAC 7489 24 100.0 37 ........................ TAGTGTTGAATAGAGGATCCAAGATCCTTACTTCTAT 7428 24 100.0 38 ........................ AGTTTCGGGTGGTGGTAGTTGGTCATTTTTGTGAAAAA 7366 24 100.0 42 ........................ CTCTAAAAAATCGAGGAGAGAAGCAGATTGAGAGGCTTTCAC 7300 24 100.0 40 ........................ TGTGTCTTTGCAATAGAAAGAGTCGCCGCGTCCGTCGCGC 7236 24 100.0 39 ........................ TTCTCTTCTTGCGGTATATACTCATAGTAATCCATTTTG 7173 24 100.0 43 ........................ CTTCAGGAGGGGGGAAAGGAAAGGTGAGAGATATGGAAGATAA 7106 24 100.0 39 ........................ AAAAGCTGCTCTAGATACTTACTCTCAATGCCAGTATCG 7043 24 100.0 35 ........................ TGAGAACAATCTACGCGAAAGTTCCCAGGAGATTG 6984 24 100.0 41 ........................ AGCATGAAGTAAGGGTTGAGGTGATTTATAAATACGAGCCG 6919 24 100.0 35 ........................ TTAATGCGGTATCTGAGAGCCTCAATATTTCTTGG 6860 24 100.0 38 ........................ ATAAAATATTTCTAGTCTTTACTGTGGAAAGAATAAGC 6798 24 100.0 70 ........................ AAGAGTTGGATGGAATTAAGTTAGAAGGGAGGGATTTGAAGGGGGCAAGAGAGTTGCCAGGGAGGGCGAG 6704 24 87.5 0 .G.......G...........G.. | ========== ====== ====== ====== ======================== ====================================================================== ================== 44 24 99.7 40 GAATCCCGGAAAGGGAGTTGAAAG # Left flank : GCTACAGAAACATGCACCTGATGGAACTATCCACTTCGATTGGAGACTTCCAGCCAGGTATATCCCGTTGAGCGTACAAGGAAACCCCGAGCTGGAGGAGGTATGGAGACATCTGAAACAAGAACGTATTGATGCTGTGGTCTTCACAGAGAATGAGATAATCCTAGTGGAAATTAAGGATGTAGTTCGTAAGAGTGCGATCGGTCAGTTGATTCATTACAAAAAAAGATTCGAGGAGGAGTATAAACCGGACAAACCTATCAGATTACAGATAGTAGCAGGTGAGGATGACCCCGTCGTCAGGAAGACTGCGGAAGAACAGGGCATTGATGTGTTAGTCCTTAACATCCCCTCCAGAAGGAAGAGAATCCTTGGGTTCTAAGAGTTCAACTTTATACTTCCACCCGCTCCAGCTCTTAGCTAACTTAGTTATCTTCACCTCAACATCCTTTAAACTTCCCTTCTCTTTTTGTATAGACGCGATCTTGTTAGCTAGGTCT # Right flank : GCAGCAATTTCTGGAGGAAGTAGAGAACCTCTCCAGATTCCTGAGCGTACCTCCGGCTAGGGAGATACCTGAGGAAGTTTCTATAAGCGAAGTCCCCAAGGTAGTGCATGCCAGATCCTCCTCAATAGATGGGAAGCTCATAATATCGAGGGAGTTCGAGGGTCACATCCATCTCATACTGAAGAAGGAAGCTTTTTCCCTCTTCATCCCTGAGGAAGCTGACTCAGTCCCGCAAGTCTACGATATGTCCTGGATATACGCAGAGGCTCCCAAGGACCTTTGGTACGATTTGAGAGCTACCCCGCCCAGGTTGTTCTCGAATTACGATCCCGTAAATCTCTTCTCCCAGCTGGGTGAGGGGCATAGGAAACAGGTACTCAAGAGCTTGCTCCTATTCGTCAGAGCCTCCGCCCTCAGGGGGCAGCTCACCTTCTCCACATACTTCGCCCTCCTCCTCAGGTTCCTGAGGAGGGAGTACAGGCTGAGGGGATCGGAGAGGA # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATCCCGGAAAGGGAGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 1 10841-12652 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCOR01000040.1 Candidatus Korarchaeum cryptofilum strain WS Ga0080004_1144990, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ============================================ ================== 10841 25 100.0 40 ......................... ACTTCTGGGTCGGCTCTGCGCTATTTCACGTCTGTTATAC 10906 25 100.0 40 ......................... AGCATCATGCTCTCACTTCCTCCTTGGGGCTAAGACGAAC 10971 25 100.0 38 ......................... TTCATCTCCCAAACACCTGCGGGGCTCGAGCTAGGAGC 11034 25 100.0 38 ......................... CGATCACCACCTCACCTCAAAGAACGATCCGAACGGCT 11097 25 100.0 38 ......................... AGGAAGTGGCAACTCGTTTTGTTTGAGCCTATAGACTC 11160 25 100.0 40 ......................... CGACAATGCATATTTTAACTCCATATGTTCCGGAGGATAA 11225 25 100.0 38 ......................... ATATGACCGGAGGTAGGAAGAGACGCAGGAGGTGAGAA 11288 25 100.0 40 ......................... CCAGTATCTCTTAGCGATGGGGACGATCGAGAGGGTGAAG 11353 25 100.0 36 ......................... TTATTTCAGCCCTGTCCATTGCTTTATTGTTAAAGT 11414 25 100.0 41 ......................... AAATTTGGTTGGCTTAGGGCCGTAAGTCAACCGTTAGGTGC 11480 25 100.0 35 ......................... TTTTAGACACAGAAACGTGGCAGCATAAGAATAAG 11540 25 100.0 39 ......................... CTTTTTACCAGTTCCCATGTGAAGAAGTCTCCCAAAAAG 11604 25 100.0 39 ......................... CCGCGAGCCTTAAGAGTTCCCTGACAGTACTGTAGAGCT 11668 25 100.0 38 ......................... TGATCCTCGCTTACATTTTAGCGAACGCGAGAGATAGA 11731 25 100.0 39 ......................... TGTACTTGACTGTTATATATAGGTTTGATGGAAGTTCAA 11795 25 100.0 38 ......................... CTGGGAACAATTTTTTATGTAGTTTTTGAGCTGTTCCC 11858 25 100.0 39 ......................... ATCATCTGGGCCAGGTTTCTTGGACGTTCCAATTGTGTC 11922 25 100.0 40 ......................... TCTCTTTGCTTCCATCAAGCTTGGTAACGTCCGCTCCGAA 11987 25 100.0 39 ......................... TACCGTTCGGCTTATACTTGGGCGTTATCACTACGTCCT 12051 25 100.0 39 ......................... TTTATTCCCCTCAGTATTTTGAGCCAGACAGTCGTATTC 12115 25 100.0 36 ......................... CTCTTATCTGAATAGTAACGCCTCAAAAAATCCTCA 12176 25 100.0 39 ......................... ACCAGGACATCCTGCATCACCTGAGCATCACCAGGACAT 12240 25 100.0 44 ......................... CTAAAAATGTACCGTGCCGCGTGATGAATGAGATGCAATCCCGC 12309 25 100.0 38 ......................... ACGATAACTACTGCGGGGATGATGAGGCTATCCACTTC 12372 25 100.0 39 ......................... TTTTTGTCGTCCTTTAGGCTTATTATAATTAGTGCCCAC 12436 25 100.0 39 ......................... TTTTTTCGTAGAAATAATAAGTGTACACACGTCCGTCCG 12500 25 100.0 38 ......................... ATTGATCTTTATTGACCAGCTCTACGACTTCATCGAAC 12563 25 100.0 40 ......................... AGCAGCTTACCGGGGCCGGTTGAAACAATACCAAATCCAA 12628 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= ============================================ ================== 29 25 100.0 39 GTCTCGATGAAAAGAGGATTGAAAG # Left flank : CCCAGCTGAGGAGCTCCCGCGACCTTGGAGATCTTAAATAAGAGAGCGAGAAAGAGTACTATGGCATTATTCACTAAAAATTAAAACAATTTAATGTAATACATTTAAACTTTAAAACCTCAGATGGATAAAAAGGAAGTCAGAATGAATTGAGGAGATCTAAGAAGTCAGGAAGATATTCTCTACCTAATCCTTAATTTATATACTTCTTCGATATTTCTTCGCTTCTTCTTTTCTTTATCTCTCGATATCCTTATGTCAGAAGGCGGAGAATCTCATCTTAATCCCTACAATCTCTCCTCTATAATAAGATACCTCTCGAACATTTACGCCCTTAAAACTATCGTGAAGCTGAACTCAAAGAAGATATATAAACTTTCCCTCGAACATTCTCAAGATGACCCTTGAACTTTTCCCTGAGTTGCGTGTGTTAGGGGAGGGGGTCCGTGGAAAAGGTTAAATAGGAGCCCTGAGCTACTATATGGATTGTTAGAGTATAT # Right flank : ATCTAAATCGGACATTCTCCATCCTTAGCTCTTTCCAGAATCTCTTTAAGCGTTTTAAATCTTCTGCTCTCTGCAAGATTCTCTAAAAGTCTGTAAAATTTCTCATCGATTCT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCGATGAAAAGAGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA //