Array 1 1-366 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUOC01000143.1 Neisseria bacilliformis strain 914_NLAC 327_384_23973, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1 36 100.0 30 .................................... AAGATGATGATAACGGCGTGTTGTACCACT 67 36 100.0 30 .................................... TCATATTAACAAAGCTCTCTTTACTATCCG 133 36 100.0 30 .................................... CAAGATTTAGAAATGCTGTATAATGTGAAG 199 36 100.0 30 .................................... CTTGTAATTCTGCGCCGCTTTCAATACGGC 265 36 100.0 30 .................................... GGGGTTTGAAGGTAAAGGGGTAGTCTGATA 331 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 100.0 32 GTTGTAGCTTCCTCTCTTATCTCGTAGTGTTACAAT # Left flank : | # Right flank : CTTAACGCGCGATTTTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTTCCTCTCTTATCTCGTAGTGTTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTGTAGCTTCCTCTCTTATCTCGTAGTGTTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 12-509 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUOC01000047.1 Neisseria bacilliformis strain 914_NLAC 101_536_27042, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 12 36 100.0 30 .................................... CCTCGTCGCAATCGTACAAATTGCAAACGC 78 36 100.0 30 .................................... CCCACAAGCTGCCGTCGGGGGCGGTTTTGG 144 36 100.0 30 .................................... TGCCGGTGTTATTACGGGCAATATGTCTTG 210 36 100.0 30 .................................... CCTAACACTTGAAACTTGCCAATACTGATA 276 36 100.0 30 .................................... ATAGTGAGTTATGGGATGATTTGCACCCCA 342 36 100.0 30 .................................... CGCTATCCAAAGATATTGGAATGGCAGGCA 408 36 100.0 30 .................................... TATAAACGTCAAATTTACCGAACACATGGT 474 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 100.0 30 GTTGTAGCTTCCTCTCTTATCTCGTAGTGTTACAAT # Left flank : CCCGCCGCTGTG # Right flank : AAGATGATGATAACGGCGTGTTGTACC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTTCCTCTCTTATCTCGTAGTGTTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTGTAGCTTCCTCTCTTATCTCGTAGTGTTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [3.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 5790-4896 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUOC01000115.1 Neisseria bacilliformis strain 914_NLAC 251_5800_169527, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 5789 36 100.0 30 .................................... GAATCAGGCCGCCGCGCCCGCGAACAGTCG 5723 36 100.0 30 .................................... ACACCGCGCGACGGCCGTCCGCATACTCCA 5657 36 100.0 30 .................................... ACTCCCCAACGCCCATCTGCAGCACGCCGC 5591 36 100.0 30 .................................... TAATCAATACAGCTACATCATCCGCTGGAA 5525 36 100.0 30 .................................... CGTTTGCGAAAGGACGGGATAATATGTTTG 5459 36 100.0 30 .................................... CAAGAATACCATATTGCCCGCATCAGGTTT 5393 36 100.0 30 .................................... AAAGTCAAAGGCCGGTGGACGTTAGATACC 5327 36 100.0 30 .................................... ATCGGACATTAAAGATGACACAACTCCGAT 5261 36 100.0 30 .................................... CCAGCGCAAAAGGCAGGCGCAGAGCGTAGA 5195 36 100.0 30 .................................... CATTCTGATCGACCTGCGCCATTTCATAAG 5129 36 100.0 30 .................................... ACTACAAAATACACAAAATAACACAAATAT 5063 36 100.0 30 .................................... ATTTATCCGCATCTCGTGCATGATGCCGGA 4997 36 100.0 30 .................................... ACAGAGTTTAATTCATAATCTTATAGAATT 4931 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 14 36 100.0 30 GTTGTAGCTTCCTCTCTTATCTCGTAGTGTTACAAT # Left flank : CCCGCCGCTG # Right flank : CCAAACAGGATAAATCATTGTTAAAAAATGGTTTATCCTGTTTTCTTTATCTAAAAAACACATTCAAAACAGCAAAAGCTGGTCTGCATTTACCTTTTTTTCACGAATTTGCCGCGTGCCCACCAACACGTCCATGCTCGCATATTGCTTCTCCGTTATCGTCAAACAGCGTATTGAGCCCTCCGTTGGCAGTGCTGCACACAATCGGTTGTAGTGTTTTTGCAACGAATCTCTACCACGCACGATGCGGGTGTAAACAGACAATTGCAACATTAGGTAACCATCTTGTTTTAAAAAATGTCTGAATTGGTTTGCTGCCCGTCGTTTCGCTTCGGTGGTAACGGGTAAATCAAACAATACGATTAGTCGCATAAATTTTTCCTCACTCATAATAATGTACTTTCAATTCTTGCATTTGCGGTAATTTTAAGATTTTGCTGCCGCTTTCTGATAAGGCAGCCTGAAAAGACTGCACGGTTCTATCGATGGCAGCAAGAACG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTTCCTCTCTTATCTCGTAGTGTTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTGTAGCTTCCTCTCTTATCTCGTAGTGTTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //