Array 1 104845-104084 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHVLI010000014.1 Escherichia coli strain BECS5 NODE_14_length_121466_cov_83.631, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 104844 29 100.0 32 ............................. TCGGCTCGTAGAAATGCAGATTCGCCGGATTA 104783 29 100.0 32 ............................. ATAAAACAACAGGTGAGTTGGGTTTTGAGTAT 104722 29 100.0 32 ............................. ACAATCAGATCACGATCGATGCCTCGCGTGAG 104661 29 100.0 32 ............................. ATTTTCGCAGCGGGTAACCGCGCCCGGCGATC 104600 29 100.0 32 ............................. TTTATGTGGAGTATCAGTGCCTGGGTGGAAAG 104539 29 100.0 32 ............................. TGGGGCTGAGCATGGCTAAACAACCGAGGCGC 104478 29 100.0 32 ............................. GTCAACTGGCACCACAGGATGATGGCGGCGAA 104417 29 96.6 32 ............C................ CAGGCGCTCGACGCGGCACGCAGTCGGGCACA 104356 29 96.6 32 ............C................ CAGGTCGACCGACTGGAGGCGGAGATTGTCGG 104295 29 96.6 32 ............C................ TGTTGTTTTTCTGCCGGATTAACGCGGTGCGA 104234 29 96.6 32 ............C................ TTGTCGGGCTTGTTCGGCGCGGGTTGTTAACT 104173 29 96.6 32 ............C................ CCAGCGAAGGACTTGCTCGTGTGGTTAAAGCC 104112 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 13 29 98.7 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGCGATAGCGGTCACCGGGGACGCGGCGGATGAGTATGGTCGTCGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCGATCTGGCTCCTGGAAGTGCGTGCCGGTGTTTATGTCGGAGATACGTCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTGGTAATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGGTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCTGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GACGCACTGGATGCGATGATGGACATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAGCTCTCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCTTTCACCAGCGGTAGCATTATCCGTATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGTTGTTGATTATCAAGCCTGACATCGTGCCAGCTTGTTCCCGCAGGGAAGGCGGCGGTTTTTGCACGTTGCTGATAGCCATCCTTATTCCCAAGATTCCAGTTAGTTGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCAAAAACTTCCGCGTCGTTACAGCACCCGGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 42900-44087 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHVLI010000030.1 Escherichia coli strain BECS5 NODE_30_length_53396_cov_86.7052, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 42900 29 100.0 32 ............................. TTTGCTGAGTGTGCATACACACTTGAACATCA 42961 29 100.0 32 ............................. CTATCAGTAACAACCTGGTAAATATCGGTTTT 43022 29 100.0 32 ............................. TGCACGCCCTGCCGGAATCTCCCCTCGCTCTC 43083 29 100.0 32 ............................. AGTAAGCCGGTTGATTATCGCCAGGGATATTA 43144 29 100.0 32 ............................. GGAAAATAAACGCGTTATTCCTTGATGGGTGC 43205 29 100.0 32 ............................. AGCAACAGGTATTTCATATGGCCTGCCGTGCT 43266 29 96.6 32 ............T................ GCCAGCGGCGCTGAGTACGACGACCTGATTAA 43327 29 100.0 32 ............................. TGGGCGCAGCTCATGTATTCCAATAAGGATAT 43388 29 100.0 32 ............................. AGATTCGCGCAATGTACGGTAAAGACAGCACC 43449 29 100.0 32 ............................. GGATTCTGCACTCTTTGATGTAATGGTACTGC 43510 29 100.0 32 ............................. TTTGTTTTGATGATTTATCAGTATATGAATTG 43571 29 100.0 32 ............................. ATTTTTGCGCGGCCTGCATGAAACCAGTGGCA 43632 29 96.6 32 A............................ GTACCGTTGAGCAATGGTGGGTAAATGGTGCT 43693 29 100.0 32 ............................. ATTTAGATACGGCACACAGGAATGCGCTGGAT 43754 29 100.0 32 ............................. CATGGGAGTCCAGATTACAAATTCCAGAATGG 43815 29 100.0 32 ............................. CGCCAGTCTGAGGTTTTCCGGTCATACATCGT 43876 29 100.0 32 ............................. ACCGTTGCTACACATATGATCAGGCATGTGCC 43937 29 100.0 32 ............................. GACGATGAGACGCCCTGGTGTGCCGCGTTCGT 43998 29 100.0 32 ............................. CGTTTAGCTCCGCAATGTTGGATATCACTGAT 44059 29 89.7 0 ...........A........A.......A | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.1 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAATTGCTTGCGACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATTACACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTCTTTGTCGCCTCTAAAAAACCTCCATTTTGCCCATCCTGGACTAATCATTATCATTTTCTACAAATTCTGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTACGTCGGAGTTTGGTGGATTTTAGTCGGTATAGAATTACTTTAAATATTTGGCTTTTCAATCAATGAATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGTTTCTGTTAAGTTGGTAGATTGTGACTGACTTAAAAAATCAATAATTAATAATAGGTTATGTTTAGT # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTCGTATTAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGCTCTCCATATATGAGAAGTTCACAATTATCGATACAAAAAATCAAATTTAATCAAAGTGTTATTTGTATAATCCTTAAACCGTTAAGAAATTTTAACATATTATTTTTTTAATATTAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTGTATTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGGAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAATCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //