Array 1 40-604 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHZTX010000010.1 Streptococcus oralis strain E665 NODE_10_length_22728_cov_78.119763, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 40 36 100.0 30 .................................... GAGGTAAAATGGCACACTTAATTATCAACG 106 36 100.0 30 .................................... ATGGGTGTTCCTAAATATGCCTCTGGTATC 172 36 100.0 30 .................................... TGTCTACAATGACCAAGTTGAGTTCTTTTA 238 36 100.0 30 .................................... CATGCAATCAACAGGACTCAAAGATAATAA 304 36 100.0 30 .................................... TAGAGTACTATAAGAATCTACTCAAAAGAT 370 36 100.0 30 .................................... AGTTAACTTCAATAATCCGTCTGGTGCTTA 436 36 97.2 30 ...........T........................ AACAAAGGTATTATGGTGAAACAAATTGTC 502 36 100.0 31 .................................... CGATACGACTGGATTCAAGTTTGGCACATCA 569 36 88.9 0 .............................T...TCT | ========== ====== ====== ====== ==================================== =============================== ================== 9 36 98.5 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : TTCCAAAACATGGGTGTTCCTAAATATGCCTCTGGTATCG # Right flank : TACAAAAAAAGCTACTCATTTTTTGAGTAGCTTTCTAACTATCCCACTCTTACACATAACTCATTCCTTTGTAGAAAAGGAAAACGGCTAGTGCGACAAAAAGTAGGGTTGCTCCAATTCGCTGGCTGGTACTATACATCTTTCTCTCCCATTTGACTGGAAAAATGACTGCTAGAAAGGCACCGCCTACTGCGCCGCCAATATGCCCTGCTAGGCTGATTCCTGGAATCAGAATACTTCCAATGATATTTATCACGAAAAGTGTCAGATAGGATTGCCCCAACTGCTGGATATAGGGGCTGCGAGTTGCGTAGCGCAAAACGATAATCGCAGCAAATAGTCCGTAAAGAGAAGTGGAGGCCCCTGCTGCTAGGACTTTCGGTGTGAAAGCAAACACAAAGAGATTGCCCATCATTCCTGATAAGAGATAGAGAAAGAAGAACTGCTTAGAGCCGAAAATCTCCTCCACCTGTCGTCCAAGAAAGTAGAGAGAAAGCATA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 16773-17930 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHZTX010000011.1 Streptococcus oralis strain E665 NODE_11_length_17930_cov_63.845085, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 16773 36 100.0 30 .................................... TGTCTTGTCTTCGACAAAGATTATTCTTAA 16839 36 100.0 30 .................................... TCCTAGTTTCAAAGATATTGAAATCGCAAC 16905 36 100.0 30 .................................... GTTGCATCACCGTTCGTGGTTCAGTATGGA 16971 36 100.0 30 .................................... AATGCACAGAGCGCTGTTTAACCATGTCTG 17037 36 100.0 30 .................................... GGTCAATGTTTAAGAACAAGGAGAGAATCA 17103 36 100.0 30 .................................... AACTATTAGAAGAGATCCTTAGTAAAGTAG 17169 36 100.0 30 .................................... TAATTTCTTTAGAAGTATATCCTAAATAAG 17235 36 100.0 30 .................................... AAGATATTAACGATAGCGTCCCACGCACCT 17301 36 100.0 30 .................................... GTAGCTATTCATCTTGAAACTGGAGAAACT 17367 36 100.0 30 .................................... TTCTCCTTTTAGTTTTATTCGTTCCCGATG 17433 36 100.0 30 .................................... TTGATCCCTCAATTTTAAAAACTATTTCTT 17499 36 100.0 30 .................................... AGGAGCTTCGGCTTCATGCTCAAAAAATGA 17565 36 100.0 30 .................................... AATAACATTTCAGACGGTCTTACTCAAATT 17631 36 97.2 30 .....................G.............. GTACAGACCTAAAAAATTCAGTGATGTAGT 17697 36 97.2 30 .....................G.............. GGCGCGTAGTAATCAGAAGAGCCAAGAAGT 17763 36 97.2 30 .....................G.............. TTTAAAATCAGCTTACGAGCGTTATATTCA 17829 36 97.2 30 .....................G.............. ATGGGTGTTCCTAAATATGCCTCTGGTATC 17895 36 97.2 0 .....................G.............. | ========== ====== ====== ====== ==================================== ============================== ================== 18 36 99.2 30 GTTTTAGAGCTGTGTTGTTTCTAATGGTTCCAAAAC # Left flank : ATCAGCTCAATGACAAACCCGAAGTCAAGTCCATGATTGAAAAGTTGGTTGCTACGATTACAGAATTGCTGGCATTTGAGTGTTTGGAAAACGAGTTAGACCTAGAGTATGATGAAATCACCATTCTAGAGTTAATCGATGCACTTGGTGTCAAAGTCGAAACTCTGAGTGATACACCTTTTGAAAAGATGCTAGAGATTGTCCAGGTTTTTAAATATCTTTCTAAAAAGAAACTCCTTGTTTTCATCAATGCATCAGCCTATCTATCAAAGGATGAGTTAGTAAATCTGATAGAGTATATCCAACTAAATCAACTAAGGGTTTTATTTGTCGAACCTCGAAAAGTCTATGATTTTCCGCAGTATGTGCTGGATCAAGACTATTTCTTGAACCCTGAAAATATGGTATAATAAGAGTAACAATTGGAACCTAACGAGCTGAAGTCAGGCTGGGACGAATGGCGCGATTACGAAATTTCGTGAGAAAAATCTTTCTACGAG # Right flank : | # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCTAATGGTTCCAAAAC # Alternate repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //