Array 1 730-30 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV799842.1 Corynebacterium sp. HMSC072A02 Scaffold92, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 729 29 100.0 32 ............................. TCTCATCCATACGGCCTGCCACTGCATCCAAA 668 29 100.0 32 ............................. GCCATCGCTCAAACGAATATCGCGGTCGATGC 607 29 100.0 32 ............................. TGGTGGCTATCTACCTGTGTGGTGCGGAGCGC 546 29 96.6 32 ............................G GGATGTGCCATAACCCAAACGGAGAAAGACGA 485 29 100.0 32 ............................. AACAGCGAAACCAGGCCGCGACGGGGCAGCTC 424 29 100.0 32 ............................. CAGGTCGTGTTCTGGCCACCGTGCTGGGAGAG 363 29 96.6 32 ............................G TTTTCATGTTTGAAACTGGGCGAGGTGGGCTA 302 29 100.0 32 ............................. ATCAGCCTCAAAAGGGAGCTAAGCCAATGACC 241 29 96.6 32 ............................G ACCTGCGGCTGCGGGCGAAGGGTGAGGACCCG 180 29 100.0 32 ............................. GCCCGCGACTTCCAGCGATACAGCGGAATACT 119 29 96.6 32 ............................G GGGTACAGCCCCCGCCGTATAGCCGAATCCCT 58 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 12 29 98.9 32 GTGCTCCCCGCGTGAGCGGGGATGAGCCC # Left flank : AACTCGAAGTCATTGCTTCAGGAGTGAATTGGGCCGAAGAGGAGACACTTTCGTGATCGTTCTTGTCATAACTGCATGCCCCGCTGGGCTTCGGGGTGACTTATCAAAATGGCTGATTGAACTAACGCCGGGTGTCTTTGTCGGCCGCCCTTCCGCACGAATTCGTGACTTGTTGTGGGAGCGAACCGTTGAACTGTGTAAGGACGGTAGAGCATTACTGGTCTATTCGGCAGCAAACGAACAGGGTTTAGAATTCCGGACTCACCGGCATCATTGGCAACCACAAGACTTTGATGGTGTCACGCTCATGGTTCGTCCTGCTCCTGGAAGCAAGAAAGTTCAAAACAGGACTGGTTGGTCACAAGCCCGACGGATTCGTTCGGCATACCAGAAACAGAAACGAAAATAGCTGAGGAACTCTAGACAGGTTCTGTGTCTCTTCCGAGAAGAAGCCGTATGTAAACTGAGGGTTCGGCTCCTTTATACGCTGCTCAGCAAGT # Right flank : CGGAACCCCCCCGCTGGAATGTTCACAGGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTGAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [16.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 6-466 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV799843.1 Corynebacterium sp. HMSC072A02 Scaffold97, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================================================================================== ================== 6 29 100.0 32 ............................. CGAAGAACTGCACGGCGGCGTTGATGTAGCAG 67 29 96.6 33 ............................C CACTCGGGGGCGTCTGCGAGGTACACGGGTAAC 129 29 100.0 32 ............................. CTGCGCAGCACGTAGGGGTTACTACATTTGCG 190 29 93.1 32 ..............T.............C AACTAGGCCCGCGCCCTCACACCACTCGCTAA 251 29 72.4 158 .........A.C...C..C...A.C..TA GGACGACTACAGTCTGCTATAGTCGGATCTACTGTCGGGACGGCGTCCGTGCAGTTGTCGGAGAGTACGCCCCACGCACGTGGGGATAGCTCGTCTCGGGTCACTGACTTCGGGTCAAGCAACATGTATGCCCCACGCATGTGGGGATAACCTAGGTA 438 29 65.5 0 .C....A..A...A.A.A..T.....TTT | ========== ====== ====== ====== ============================= ============================================================================================================================================================== ================== 6 29 87.9 58 GTGCTCCCCGCGTGAGCGGGGATGAGCCG # Left flank : ACCTTG # Right flank : TGTATAGACCGTTGGAAGCGTTGTGTCCAACGTGGAGTCGAGCGAGTTTCCCAGTCGTTGTTGTTTTCGATATGGCGTGCACTCCGTTGCAGAATTTCGCGCTTTTCTTCGCTGGAGTTTCAACACTGTCCTAATTTCGTAGTTTTTCTTTTCATGAGAAAACTAGGTCTTCTCCTTTCGCAGTACGCTAGGGTCAGTATCTGTGATTCAGGACGTCGACCCGCTCATCCATTCCCTGTACCAGGTCTTTGATCTCATCGGTGTGGTACTCAACGGCATTATCGGTGGCACGATTGCACGCCGTAGGGAATTCGACATTATTGGCTTCGTCTTTCTGGCGCTCTTTTCGGCGCTGGCTGGCGGCATGATCCGTGACATGCTGATCGCCAGCGGTCCGGCTGCGGCTATCTCTGATCCGCTGTATCTCACGCTGGCGTGTGTGGGCGCGCTCATTGCTTTCTTGACGGACCTGAAGGGCAAGGCCTGGGAAATCTTCCTCG # Questionable array : NO Score: 2.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.40, 5:0, 6:0.25, 7:-2.74, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTGAGCGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [5.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 520-3 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV799891.1 Corynebacterium sp. HMSC072A02 Scaffold431, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 519 29 100.0 32 ............................. CGACGATGACCGGCAACCAGCGGAGCTCAACC 458 29 96.6 32 ............................G TCCTGCTCTGTCGGGGTGAGCTCTGGGTCGCC 397 29 96.6 32 ............................G GGATGTGCCATAACCCAAACGGAGAAAGACGA 336 29 100.0 32 ............................. AACAGCGAAACCAGGCCGCGACGGGGCAGCTC 275 29 100.0 32 ............................. CAGGTCGTGTTCTGGCCACCGTGCTGGGAGAG 214 29 96.6 32 ............................G TTTTCATGTTTGAAACTGGGCGAGGTGGGCTA 153 29 96.6 32 ............................T CCAGACTGTCACCCCGGCCCGCTTCAACCCAG 92 29 100.0 32 ............................. GAATACGGCTGTGGCGGCGAATAGTAAGGCGA 31 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.5 32 GTGCTCCCCGCGTGAGCGGGGATGAGCCC # Left flank : CCGAGTGCTCCCCGCGTGAGCGGGGATGAGCCCGGGCCACGGGGCACGGAGCCTAGGGGGAGAGCGTGCTCCCCGCGTGAGCGGGGATGAGCCGGCAAAGTCGCAGTCCTCGCCTGCGGCTACCAAGTGCTCCCCGCGTGAGCGGGGATGAGCCGGAGTTCGTCATCGGAGCCAACACCACCGGTCGGTGCTCCCCGCGTGAGCGGGGATGAGCCCGACGCCACGGATTGCACCACTGACATGAATACGTGCTCCCCGCGTGAGCGGGGATGAGCCGACACCATCGACCCCATCAACTGGAACGAAATCGTGCTCCCCGCGTGAGCGGGGATGAGCCGCTCTTCTCGTAGCCGGAGCGTTTCTTGGGCTAGTGCTCCCCGCGTGAGCGGGGATGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGA # Right flank : CCG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTGAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-1.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2053-682 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV799891.1 Corynebacterium sp. HMSC072A02 Scaffold431, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2052 29 96.6 32 ............................G AACGTTGAGCTGGCCCGTCGCGTCGGACTTAC 1991 29 100.0 32 ............................. CTCTGGGATGGGGAGGATGACGAGTTGGGCGA 1930 29 100.0 32 ............................. CGTGGGGCGGTCAGAGGGTCGCACGAATGTGT 1869 29 100.0 32 ............................. GTCAAATAGCGCCAGTCGTCTATCGTGTCGTC 1808 29 100.0 32 ............................. TAGAAAGGACCCCCAACAATGCAAATCATTAG 1747 29 100.0 32 ............................. GTCAATCCACACGGGCAGGTCGCGGCGCCCAC 1686 29 96.6 32 ............................G TCAATGTTTCTGCGTTGCGACATCATGCTCCT 1625 29 100.0 32 ............................. TCCCCGAAAACCACCCCTGGCTCGACGAGACA 1564 29 100.0 32 ............................. CGCGGCGGCGACCGCGTCCTCGTCGGTGTACT 1503 29 100.0 32 ............................. CAGGTTTGGCGCGGTAAGCAGATGCCCTCTTT 1442 29 100.0 32 ............................. GTGATGACCTGCGCGGCCTGGTCAAGGTTAGT 1381 29 96.6 32 ............................A TGAGGAGCGGGCAACAAAGATCCTCCTATCCG 1320 29 100.0 32 ............................. TCCTCACGTGAGTGCCAGAGGGGTGATTTTTT 1259 29 96.6 32 ............................G GGCTACCAGGCTGTTGTGGTCGTGCCGACCAC 1198 29 100.0 32 ............................. TTGTTCTCGCAGCACCAGACGATAAGACGGCG 1137 29 100.0 32 ............................. AGACGGCGAGGACCAGAACTCCGGCTTAATCG 1076 29 100.0 32 ............................. CAGGCCGCCGGCGTATTTACTGGAATCACCGA 1015 29 100.0 32 ............................. GGGCCACGGGGCACGGAGCCTAGGGGGAGAGC 954 29 96.6 32 ............................G GCAAAGTCGCAGTCCTCGCCTGCGGCTACCAA 893 29 96.6 32 ............................G GAGTTCGTCATCGGAGCCAACACCACCGGTCG 832 29 100.0 32 ............................. GACGCCACGGATTGCACCACTGACATGAATAC 771 29 96.6 32 ............................G ACACCATCGACCCCATCAACTGGAACGAAATC 710 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ================================ ================== 23 29 98.8 32 GTGCTCCCCGCGTGAGCGGGGATGAGCCC # Left flank : ACCT # Right flank : CTCTTCTCGTAGCCGGAGCGTTTCTTGGGCTAGTGCTCCCCGCGTGAGCGGGGATGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGAGTGCTCCCCGCGTGAGCGGGGATGAGCCCCGACGATGACCGGCAACCAGCGGAGCTCAACCGTGCTCCCCGCGTGAGCGGGGATGAGCCGTCCTGCTCTGTCGGGGTGAGCTCTGGGTCGCCGTGCTCCCCGCGTGAGCGGGGATGAGCCGGGATGTGCCATAACCCAAACGGAGAAAGACGAGTGCTCCCCGCGTGAGCGGGGATGAGCCCAACAGCGAAACCAGGCCGCGACGGGGCAGCTCGTGCTCCCCGCGTGAGCGGGGATGAGCCCCAGGTCGTGTTCTGGCCACCGTGCTGGGAGAGGTGCTCCCCGCGTGAGCGGGGATGAGCCGTTTT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTGAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [35.0-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 25-236 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV799892.1 Corynebacterium sp. HMSC072A02 Scaffold465, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 25 29 100.0 32 ............................. CTTGCGCCGCGCTGGCCTGGAACCATCACGGA 86 29 96.6 32 ............................C ACCGAAGAAGGCCGCATTAACTTCGGCGTCGA 147 29 96.6 32 ............................C GGATTTGCCTGGGTGCCTTGCGCGATGACCTT 208 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 98.3 32 GTGCTCCCCGCGTGAGCGGGGATGAGCCG # Left flank : CCCCCCCGCTGGAATGTTCACAGGG # Right flank : | # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTGAGCGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [13.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //