Array 1 1283607-1282357 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048875.1 Streptomyces albus strain CAS922 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1283606 29 100.0 32 ............................. TCCCACCACCGGCCTATGCGGGCGAAAAAAAG 1283545 29 100.0 32 ............................. GCCCCCTCCGCTGTTTGTCTGGCCCCGATACT 1283484 29 100.0 32 ............................. GTGCGCCTGAACACCAACTTGCGGTTGGGGTC 1283423 29 100.0 32 ............................. CGGACTGGCTACAACAACCGTGCTTTTGTGGG 1283362 29 100.0 32 ............................. AGCACCAGCTTGCCGCGACGCTGGACGCCTTC 1283301 29 100.0 32 ............................. GGCTCCGGCTCCGGCTCCTGGGCCAACTCGGT 1283240 29 100.0 32 ............................. CGGACTGGCTACAACAACCGTGCTTTTGTGGG 1283179 29 100.0 32 ............................. AGCACCAGCTTGCCGCGACGCTGGACGCCTTC 1283118 29 100.0 32 ............................. GGCTCCGGCTCCGGCTCCTGGGCCAACTCGGT 1283057 29 100.0 32 ............................. TGCCCCGGGCACGCATCGCATACGTACACGTC 1282996 29 100.0 32 ............................. AAACGCGCGCACGCCGTAATCGAGCACGCCCG 1282935 29 100.0 32 ............................. GACACCCCTGACCCGCCGTGGACGGAGGCGTA 1282874 29 100.0 33 ............................. CGAGGCGACGACCAGGTGCCACGGGCTCGCGTC 1282812 29 100.0 32 ............................. GGCCGCGAGAGGCCCCGTTTTTGGCGTTCTCG 1282751 29 100.0 32 ............................. CACCCTGCCAGAGATGGAGGGCTCCCGGGGCA 1282690 29 100.0 32 ............................. TGGGCGCCGCCGCTGTCGTAGAACCGCAGCTC 1282629 29 100.0 32 ............................. CAGTGGGGGTCCGGCATGTGCAGCCAGGCGCG 1282568 29 100.0 32 ............................. AGGCCGGGAAGGCCACCGTGGAGGCCGCCGGG 1282507 29 100.0 32 ............................. GGCCACCACCTGGCCACGGCTCACCCCTCCTC 1282446 29 100.0 33 ............................. ATCAATCTGCTGAAACAGCAGCAGAAGCAGACC 1282384 28 72.4 0 ..............T....TT-...GGAG | ========== ====== ====== ====== ============================= ================================= ================== 21 29 98.7 32 GTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : GGCGACGTCCACATCGACAGCGGACGCAACCACGGAGAAGAGCCCCTCTGGTGACCGTCATCATCCTCACCACCTGCCCCGCCGGACTCCGCGGTTTCCTCACCCGCTGGCTTCTCGAACTCTCACCCGGCGTCTTCCTCGGTGCCCCCTCCGCCCGCATCCGGAGCATCCTGTGGGACGAAGTCCGCCAGTAGGCCGGGCAAGGCCGCGCACTCCTCGCCTACCAGACCGACAACGAACAAGGCTTCGCCTTTGAAACCCACAGCCACCCCTGGCACCCCATCGACCACGAGGGACTCACCCTCCTCCACCGCCCCACCACCACCCCCAGTGCGCCGGCTGCCGCTCCCGATACCCCACCGCGAGGCTGGAGCAAGGCAGCCCAACGCCGCCGCTTCCGACGCACATAACCCGCCCAGAAACAGATGCCCTATATGCCCGACTCGGCGAAAGTGAGTAAAACCCGCCCCCACCCGCAGTAAAACCCCACGTCGCGCCCT # Right flank : TGCGTACAGCCTTGATGACGTGCGGGAGTTCCTGCGTCGCGTCAGGCTCGACCCGGACGAGGCGGACCTGCACGAGCAGAAGCTGATCGAGTGGCGTGGCGGCGGCCCCGACGTGTGGCGGCAAGGCGATGGTGCCTGAAATCCGGTGCACGTGCGGGCGGGCCGCCCCCGCCTGAGCCGGCAGCTTCGGCGCAGGCGGGGGCGGATCGGCGTCCGGGGCTCTACAGCCGAACCCTCCGGTGCCTACGCGAGAGGGACGTCCCGTTCGCGCACGCGACAGGGTGCCCGTCTTCACTGATGCCAACCTGACGGCCGCGACGCAAGGGCTTCCTCTCACGTGCACTTGGTGGCCCACTCAATCAACCGTTCGAGAGTCGTCCTGAACGAGCCGAGCTCGCCGAAGAGGTTGCGCCAGGGCGCGCGCAGCTATGGCGAGAAGGTCCACGAGCCAGCATGAACGCCTGTGTGCTCGTAATACGTAGGACCAGGGTCTGGTCCCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1295596-1294897 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048875.1 Streptomyces albus strain CAS922 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1295595 29 100.0 32 ............................. TTCGAGGCCTCGATCACCTCCCTGACAGAAGG 1295534 29 100.0 32 ............................. AGGAGAAGCGACAGCTCGGAGACGAAGTCCGT 1295473 29 100.0 32 ............................. CGCCGCCTCTCGCCCGCGTTCGCGGAATGGAT 1295412 29 100.0 32 ............................. CGTGAGGCCGGTCCGGCCCTATACCTCATTTA 1295351 29 100.0 32 ............................. GTCCACCTGTGCGCGTGGTGCGGCTCGCGCAT 1295290 29 100.0 32 ............................. GTCCACCTGTGCGCGTGGTGCGGCTCGCGCAT 1295229 29 100.0 32 ............................. GCGTCCACCAGCGGGGGCAGGATCGGCAGCAG 1295168 29 100.0 32 ............................. GAACCGCGCGTAGTGCCCTTGGAATGCGGTGG 1295107 29 100.0 32 ............................. GGCGACGCCGAGCCGCGCAGGTTGAACAGCAC 1295046 29 100.0 32 ............................. CTCAAAAATCTGACGGCCTGGACGCACGCGAT 1294985 29 96.6 32 .....T....................... GGCCGTGACCACACCGGCCCAGGAGATCCGTT 1294924 28 89.7 0 ................-.......A...G | ========== ====== ====== ====== ============================= ================================ ================== 12 29 98.9 32 GTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : GACCTCACGGCCATCGGCAAGGTCCAGACGTCCCCGATCAGCTGCAGCAGCTCGGGCTCGTCGTTGGCCACCCGCCGCGACAGCAGTGTCTTGCCGTCCGCGTTCAGGGCCAGGCCGTGATGGTGGCCCTTGCCGCTGTCGATCCCCGCCCATATCCGGCTCATCGTGCTCCTGACGTACGTGCTTGTTCTGCTCGTGCCACGGACGACCTCGCCGGCATTGCTCTACACAGCGACTTGTTCGCACTTCCTAATCGGCGGCCGAGTCGTCGTGGGGTGCCGGGCGGCGAAGCGTCGTATGCCACGAGACGGCAGCCGCCTGATAGCCACACCCAGCACCCCTGGGCGACCCAACCCTACGAATGGCTCGATCAACCCGATCAAGAAGGTAGAGCCGCCTGACGCTCCTCTCCGGCCGCTCGGGGCGGCAGCCGGTCGGCTGCCGCCCCGAGCGACACCCGTTGCACCCCATCCCGTACGAGAAGGGGCACCAGTGGCACG # Right flank : TGTCGAGACTGTCTTCATGCGGGAGAAGGCGTGCTCGATGCGAGGGCGGGTTTTGCGGTGGAAGGCATGGTGTTCCTCTTCCCAGGTTGGCAGTTCGGTCTGGCCATGCTCTCGTCGGCGTGCAGTCGTTGCGGCTGCCGGGCACCGGTCGGCCGACGGCGACGACCCGGCGGGCGCCGGCGCCGATGACGACCCGTTGGCTGGTCGAGTACCGGTAGTTCTTCGACTGCTCGGCGACGGTGTTATCGCGGGTGAGGACCAGGGCGCCATCCAGGACCAACCTGGTATCGCTGCATGAACGCCTGTGTGCTCGTAATGCGTAGATTAAGGGTTCGATTCCCTTAGGCGGCTCGGACGAAGCCCAGGTCACAGATCCTGTGACCTGGGCTTTTCTGTGGTTCAGTCCCTTCGTAGGTGCGGCTCGGTGATCCTTACCGTCCTGCACGGGCCCTGAGTGGACGAGCCGTGGACAAGCGTGCAGTGCCTGTGCGGAAGGACGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 2570333-2570483 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048875.1 Streptomyces albus strain CAS922 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2570333 29 100.0 32 ............................. ACTTGCCAGGTCTCGCGGAAGTGCAGCACCCA 2570394 29 96.6 32 .........................T... GCCCGGTGCATGGTCGAGCGGCCGTAGCCGGT 2570455 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 98.9 32 GTGGTCCCCGCACGCGCGGGGTTGGCCCC # Left flank : GGTACCGCTCCGCGCAGTGCCGGACATGATCAGCCGAGGCGGAGTGCGCTCGGCCAACGCCGTGGCCGCACTGCTGATGCTGCACCGTCTCCGGCTGAGCTGACCGGCCGGAGAAGTCGAAGATGCAGGACAGTCTTGCCGGGCACGCGGTGGTGGCATGGCTGCACCGGTCGTCGTCCATCCGCCCGACGTGCGGAGCGTCGGCCGTGCCCTGAGTGCCGGCCGCCCCCTCCTGGGCCGGCAGGCTTCGGCGGGCCGAGGGGGCGGGACGCGGGGCGCCTGGAGCGGGGTTTCCACAGGCAGGCCGGACAGTCATACCGGAAGCTCACCCCTGTGAATAACAGAAGCTCGCAGGGCCAGCCCCTGACGAGCCCGAAGCGGCCACGTGGCACCCTTCGGCGGGATTTCGACCGTACGAACGAGAAACACCCGGAACGTCCGAGTCGTGGGAAGTAGTTAGAATCGGCACTCGGCTGGCGAAACGCTGCTGGTCGGCGCCT # Right flank : CTGGAGCAGCGCCGACACGGCACCGGAGGTGCGTGGTCCCGCCGACAGACGGCTCGTTCCCCGTTATGTTGTTCGCGGTCCTGCAAGAGGGCTGCTGGCCTCCGGGCCCGGTATGACTGTTGCCCCCTGTCGAACAGATGACCCGGGGGGTGGTGTCACCGGGCCCGAGGGGTGCCGTCGGAGACGCTGATCAGAGGTCCGGCCGCCGCCCTGCCCGGCGCAATGCCGGGGCACTCGCGGGCGGCAGGTCTGCATAACGTGGATGCGCGCGAACGGCCCCGCCGCCGAGGCCGGCACGGCATCGACGCATGTGGGGGCACGGTGATCGACATCGACGAGACGGGCGTCTTCCTCGGTCTGGACGTCGGCAAGAGCAACCATCACGGCCACGGACTCACGCCGGCCGGGAAGAAGGTCTTCGACAAGGCCCTGCCGAACGGCGAACCGCAATTGCGGGCCGTCTTCGAAAAGCTCAAGGCCAAGTTCGGCACCGTCCTGGT # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCACGCGCGGGGTTGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGCCCC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 2822230-2821956 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048875.1 Streptomyces albus strain CAS922 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2822229 29 100.0 32 ............................. GGGATGCGGGCCTTCTGCGGGTCGATCCAGGA 2822168 29 100.0 32 ............................. GGCACCGGGACCGTCTCCCCGGTCACCGTGTC 2822107 29 100.0 33 ............................. GCCTCGTGCTCAGCAGCCGGTTCGGCATCATGA 2822045 29 100.0 32 ............................. GGCCGCAGCGCGGTGGGCGCCGGCTGCTGCGA 2821984 29 96.6 0 .............C............... | ========== ====== ====== ====== ============================= ================================= ================== 5 29 99.3 32 GTGCTCCCCGCACGTGCGGGGATGGTCCC # Left flank : CCGGCGTCGCCTTCCCAACGTCGTGCACCCCGGCGAGCCATACGGCCAAGGCACGGGCGTCGGCGAACCCACCGAGAAGGGCCTGGGCAACGAGGCGCTTCACCTGCTCGGGCAACCACCGGTCCCAGAGCAGCCCGGCCGTGGCAGCGCTGTCGGACATGTGCCGCCAGAGGGGTAGGTAACCGTCATCCGCATAGGACGACTTGGCCCACGCCGCGCGCGCCCCCGGGGACAGCCGCTTACCGAGCCGCCGCCCCCGTACTTTCTCCCCCACCGCCTACCTCCGCTGTTCCCGGCCCCGTCACACGAATGACGCCGGGCTCGAACGCCACCCCAACCGGCAGTATGCGCACGCGCGGAGCAGTCGTGGGGAGAGTTGACAATATGGACCGGAACTACTCAGCCTCGCGCCCCTTTTGAACTGTTGGTGAGGTATGCACCATTCAATGAAAGTGAACCCCACGGCCACCGGCGACGGATAAACCCGCAGGTCACCGAGT # Right flank : CTCCACGGGCCGGACCAGCAGGGCAAGTCCAGACCTGCGGAAACGCTCCGGAGGAACGTTTCCGCAGGCCAGAACGATTCTGCTGGGTGGGGCGGGTGGGACTCGAACCCACGGCCGACGGATTATGAGTCCGCTGCTCTAACCGGCTGAGCTACCGCCCCGTAACGGCGCGCCGCGCACGAATGTGCGCGCCGTCTGCCGCAGCATAACCGTTCATAGGATCTGCCGCCCGCGGCGGGGGAGATCTACGCAGGTGAGGACCCCAGGCAAGGGGTGAACGGTTCCCGCTCCCGCCGACTTCCGCGAAGATCGCCGGAAAAGGGCGGAAAAGCACCCGTCGGCTCCGCCCTCCCCGGCCGCCCCCTCGCCGCGCGGACAGCGCCGGCCGCATCACCGCGCACCGGCCCCGGCATACCACCGCGCACCGCCCCGGGCGTACGGCACCGCCCCAGGCATACGAAAAGGGCCCCCGAAGGGGCCCTTTCCTTCTTGCTCCCGCG # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGTGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGCTGGTCCC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 3073775-3073565 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048875.1 Streptomyces albus strain CAS922 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3073774 28 100.0 33 ............................ CAGCACGCGGCCCGCCAACCGCCGGGTGCCCGA 3073713 28 100.0 33 ............................ CTGCACCCAGTGGTCCCCGACGCTGTGGCCGAT 3073652 28 96.4 33 .........................C.. CAGGTGCCAGACGTCCGCGTCGGTGATGGTGAA 3073591 27 67.9 0 ....CG.....C.C...ATA..-..C.. | ========== ====== ====== ====== ============================ ================================= ================== 4 28 91.1 33 GTGCTCCCCGCACGCGCGGGGTTGGTCC # Left flank : TTCGGCGCAGGCGGGGCGGATCGGCGTCCGGGGCTGCCTTGTCCAACCCGCAGGCGCCTCCGCGACGTGACGTCCGACGCGCATACCCATGGGTTGCCGCGCCAGGCGAAACGGAACGCGTCTCGTTCGCTCCTACCGGCCGAATGCGGCCAGCTCCACGAGCAGCTGCGCCATAGCCACCAGCAGCGCCCACCGGCACCAGTCCACACGGCGTCGGTCCGCGCCCAGCTACCCACCTCCATGATCCGTTCCCGGGACCGTAGAACGGGGCGCGAGGTACCCGGAGCGGAGTATCCACAGACAGGCCGGATCGTCATACCGGAGGCTCACCCTTTGGATGAAGGGCTCGTCGGACTGGAGGCTGACCAGCCCTCGCAGTGGCCCAGCTGACACCCTTCGGCAGGGTTTTGACTCCTAATGGGAGAACGCCCGGAAGGTCCGAGTCGTGGGAAGTGGTTAAAATCAGCCCTCGACTGGCGAAACGCTGCTGGTCAGCTCCT # Right flank : CGCCGGCACCGCTCGGCGGGGCCGTCCATCCACAACAGTCAGCACGGTGGATAGGAGCACTCCCGAGCCTCCCACCACATACGGCCAGCCCCCGGAAACACGAGAACGCCCCGCCACCGACGATGGCGGGGCACCTCCACACCAGGAGGTGCCGCTACCGTGCAGCGAGTTCGTACAGCGTCAGCACCAGCGCAGCCAGCCCGGTCAGCGCAGCGACCGACGGAAGAGGCCACCGGGCACGCTTCAGGTCCTCGACAGCGGCCCGCAGGCCGGTGATGTCCTGATCGTGGTCCTCGCGCAGCCGCCGCACGTCCTCCTCGGCATGGTCGGTGCGCTCCAGCACCACGTCCAGGCGCCTGCCCAGCCGCGCGAAACCTGCCTCGCTCGCGATCGCTTCTCAGCTGTCCTGAACAGCACGTGCACGTAGGCGCTCGTCGCCGCTGACGAAGGAGATGACCGACGCCGCTCCCCGGTGGGCGCGTGCACCGAGCACGGTTCGG # Questionable array : NO Score: 5.41 # Score Detail : 1:0, 2:3, 3:0, 4:0.55, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGCGCGGGGTTGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACACGCGGGGTTGGTCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 6526436-6525562 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048875.1 Streptomyces albus strain CAS922 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 6526435 29 100.0 34 ............................. GGGTCGTCCTTGACCGGGGCGGAGCCCATGCCGT 6526372 29 100.0 37 ............................. CAGGGCGGGCAGGGGAGCGGATCGTGACCTCGCCCCG 6526306 29 100.0 36 ............................. ACCTCGGGCGAGGCGGCCTCACGGTAGCGGGATGTC 6526241 29 100.0 36 ............................. CCCAGCAGCTGGCGGACATCAAGCTCTAGACACGTG 6526176 29 100.0 37 ............................. GCCGTTCCTACGGAACTTGCCTACGTCACCGGTACAT 6526110 29 100.0 36 ............................. GGGCCCTGCCGCTTCCCGAGCCGCGGCACTCCGCGG 6526045 29 100.0 34 ............................. GGCGGCTCCTGTTCGGGGGGTGGGGTGGGTCCAG 6525982 29 100.0 36 ............................. GTTGGCCGCCCGGAGCGCAGTGGTGGGCGTAGTTCA 6525917 29 100.0 36 ............................. CTGCCGTACAGCGCGGGTCCGAACGGGCCGTCGGGG 6525852 29 96.6 36 .C........................... TCGAGGCGTACGTACTCGTACCGGGCCGATTCCCGG 6525787 29 96.6 36 .C........................... ATCCATGTCGGCTCGACGCGGAAGGCGGCGGCGAGC 6525722 29 93.1 39 .C..........T................ GCGGGAGCTGCGTAGAGGGGACCTTGCCGGAGGCGTCGA 6525654 29 100.0 35 ............................. GTGTGCGGTGTGGGCATGGGGGGGTCGGTGCTGTT 6525590 29 86.2 0 ........A.C.....C.......A.... | ========== ====== ====== ====== ============================= ======================================= ================== 14 29 98.0 36 GTCGTCATCAACCCTGGTGGGTTCGCAAC # Left flank : AACGGCCGCAAGCGATGACCACGCCAGCCCTCGTCATGCAACGCCCGGGCCAACTCCGCATCCGCTGCCCCGAGGACCTCATACGCCACACCCCGGGCAGCGCCGTGTACATCCCGCCAGGCCATCTGCGGCGCATCGGCAGCAACATCTACCCTGATCCGCACCTTCTCCCCTCCCCCACAAGGCCCTTCGACCACCCAGTCCATGCTCCGGCACTGTACGCACCTGATCCCGCCTTTTGGGTGAATACGAAAATATGGGCTCCTACTGCCAGTTCGCGTGCTATATGCGCCCCGTGGCCGACGGCCTTGCGCCATGGGAGGGAACCTAACGTCTTCCACTGACACCGCTTATCCTGGCGGGCGGACGGAACGATGAGAGTTGCGCCGCGCCTGCCGACCGGCCGCCTGACCTGCGTGTGTGCACTACCGGCGGGTCGCTGCAGAACAGGCCTTGTGAAGCCCGCCGAACCGCACGATAACCAGCGCCTTTACCCTGGG # Right flank : ACCCGAGTCGGCCGGCCTCGACGTGGCTGGAGTTCTGGTCATCATCACGGAGGGAGTCGGCCACCGGAAGAGACCAGTGCAGGCGGCGCCACCCGAAGCGGACTGGGAGGCCCCGGACTTGCTTGCCGCGCTCTCGGTGTGAGGACCGCGGCTCTTAGCAGTCCCTCCCGCCGTCGCAGGACAGCGCGGGGCGCCAGCCGGCACGGCCGGTCTACGGCGTGCCGCCGGAGTCGGGTGGGGCCGGTCGGGTGAGGCGGGTGAGGTGGTCGCGGACCTCGCGTGCCTGGGGGTGTCGGCGGTAGGGGGCGAGGGAGCGCCGCAGGGCGGTGAGTGCTGTCGTGGTCCGGCGGGAGGACGTGTGCGGGTAATGCGCGGCGGCCTGTCGGCACTGGTCCAGCGCGGCATCCAGTTGTCCGAGGTCCAGCAGCGTCCTGGCCAGTTGCGCGTGGGTGAGCAGGCGGGAGACGTGGTGGGTGGGTGGGCGTGCGGCCAGTGAGTCC # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCATCAACCCTGGTGGGTTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.30,-6.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 7 6535005-6535886 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048875.1 Streptomyces albus strain CAS922 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 6535005 29 100.0 40 ............................. CAGCCCTCACCCGGTACGCCGAGCACCTGCCCGGATACGA 6535074 29 100.0 36 ............................. CTGTGGTCCGAGCGGCGGGCCCGCCAAGCAGCCCCG 6535139 29 100.0 36 ............................. GCTGGGCGTGGCGGCGGCCCTACATCGGCTACGTGC 6535204 29 100.0 36 ............................. GAAGGCCGTGCGGCAGGCCGCGGCAGGCTGGTGGCA 6535269 29 100.0 38 ............................. TGGTGCAGGAGCGTGGGCTCGGTGTCCACGTCCGTGGT 6535336 29 100.0 36 ............................. GCGGGTGACGCGCTGGCTGAAGCGGATCGCGCAGGC 6535401 29 100.0 36 ............................. ACCGCAGCGTGGACACCCGCGCCGTGACCGTGCCCG 6535466 29 100.0 37 ............................. TAAATGCCGTCCTCCGGGGCTCTCAGTCTGGTGACGA 6535532 29 100.0 35 ............................. CGCCGCGCTCACGGCGGCCGGGGTGTTCGGCGTGC 6535596 29 100.0 37 ............................. AGCACACGCGCAGCTTCGCGGAGAACTACGCCAACGA 6535662 29 100.0 37 ............................. GTGGTGATCCGCCACACCAGTACGGGGACGCTGACCT 6535728 29 96.6 35 ..........................G.. TGGGGCCGGCAGTGGGTAACGCTCTGGACAGAGGC 6535792 29 89.7 37 ..T.......A..........A....... CGGCCCAGGAGACCCCGGCCAGGCGCAGCAGCAGCGC 6535858 29 86.2 0 ...................C.CG.C.... | ========== ====== ====== ====== ============================= ======================================== ================== 14 29 98.0 37 GCCGTCATCAGCCCTGGAGGGTTCGCAAC # Left flank : GAAGAACTCGCCACGACCATCTACCACCGTGCCCTCAAGCGAAAGGTCACCTACGAAGAACTCATCCACCTCGAGGCGCTGAAAATCGTACGTCTATGCCTCGAAGGAACCCCCTACAAACCCTTCCGACCCTGGTGGTGACCCCTCATATTCATCATCCTCGTCTACGACACAGCCACCGAACGCAACCCCAAGGTCCTCAAAACCTGCCGCAAATACCTCCACTGGACCCAACGCAGCGTCTTCCAGGGCGAACTCACCAAGGCCCAGTACCGAGCCCTTATGACGTTGCTGAAAAACACCATCGACCCCGCCTACGACAGCATCGTCACCTACACCAGCCGATCACCCGACCTCATCGAAACAGCCACCCTCGGCACACACCTGGGAGGCCCCGGCGACATCCTCTGACCAGCACGTTTGCACTACCGCCGAGTCGCCGCAGAACGCACCGGAACAGCTCGACGGAATTGGCCCCTGACCAGGTGCTTTACTCTCGG # Right flank : CGTGAACCCGGCCGCGGTCTCGACAGGTGTCTGCGGCCCTCGCTTGCCGTCAGGCAACGCACAAGGGTTGCTCGCGCCGGGCCGGCGGCTCCAGACACGGTGCCGCCGCGCCCTGTTCCCGGCCCACTGAGCAGCAGGCCGGAACAGGGTGCGGCGGGGTCCGCGTATCAGATGTCGCGGAACGTCTCGATCTGCGCGCCGACCTCGTTGAGGCGCTCCGCCAGGTCCTCGTAGCCGCGGTTGATGACGTACACGTTGCGCAGCACCGAGGTGCCCTCGGCCGCCAGCATGGCCAGCAGGACGACGACGGCGGGGCGGAGGGCGGGCGGGCACATCATCTCGGCCGCGCGCCAGCGGGTCGGGCCCTCGACCAGGACGCGGTGCGGGTCGAGCAGTTGGAGCCTGCCGCCGAGGCGGTTGAGGTCCGTCAGATAGATGGCCCGGTTGTCGTAGACCCAGTCGTGGATGAGGGTCTTGCCCTGGGCGGAGGCGGCGATGGC # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGTCATCAGCCCTGGAGGGTTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.20,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //