Array 1 787230-793019 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABRVR010000002.1 Shewanella sp. DC2-4 contig_02, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 787230 28 100.0 32 ............................ TTAGCGGCTGCTAGTGCGGCGGCTTCCTCGGC 787290 28 100.0 32 ............................ TGATGGAGGTATTTATACTGCATACGGTTCGA 787350 28 100.0 32 ............................ AGTTAAAAGCGCAGGACATGCTGAACCGTATG 787410 28 100.0 32 ............................ TGTATGAAAATCACTGTAAGAAATGTTTATTT 787470 28 100.0 32 ............................ TATCGATTTTACGGATTCGTCGGCGCCGAACG 787530 28 100.0 32 ............................ TGTATGAAAATCACTGTAAGAAATGTTTATTT 787590 28 100.0 32 ............................ TATCGATTTTACGGATTCGTCGGCGCCGAACG 787650 28 100.0 32 ............................ TAAGCCCAGATTGTCAGTCGCCAAGTCGATCA 787710 28 100.0 32 ............................ GAGCTGGAGTTAAAACAACTTCGTTTACTGTG 787770 28 100.0 32 ............................ GTTTGCCCCTCGCGATATGTTCCGCTTTGTAG 787830 28 100.0 32 ............................ GCACCTTGGCATGCACACTCTGTTATGCTCTA 787890 28 100.0 32 ............................ CCGTAAAACTGGATTGTGCGCCCTTCTATAGA 787950 28 100.0 32 ............................ GTTACCATATCCCTAAACTCGATAGGCGTTAG 788010 28 100.0 32 ............................ ACAAGCATTGCCCGGCAATTCTGATAACGCTG 788070 28 100.0 32 ............................ TGCTCGTCGTGGTAGCTAGTGCCTGTCTTTGG 788130 28 100.0 32 ............................ TACGAGGGCGACATAGGCAACAACACTTATAA 788190 28 100.0 32 ............................ ATGTTCCATCCACACGGCTATAGCCAAGTAAC 788250 28 100.0 32 ............................ GCCTTGAATAAGGTGGTTCATGCAGCCTCCTT 788310 28 100.0 32 ............................ ATGAAAAAGAGGCAAGCTTTACCGCCGGTGAT 788370 28 100.0 32 ............................ GTATAGCGTTGATGCCTTGCCAGCGGCTGGAT 788430 28 100.0 32 ............................ TAGTAATACTTTGAGCATTGCAAAGTTGCCGT 788490 28 100.0 32 ............................ TATTATGGCAAACGATGTGGTCAGCCGTGGCC 788550 28 100.0 32 ............................ ATGCGTCAGAGTTAAATAAGGACGTAAAAGGT 788610 28 100.0 32 ............................ AACACAGTAAACGAAGTTGTTTTAACTCCAGC 788670 28 100.0 32 ............................ TTTATCATTGCAAGATACCAACGTATTCAACG 788730 28 100.0 32 ............................ CCATAGAACTGGATTGTGCGCCCTTCTATAGA 788790 28 100.0 32 ............................ AAGTGGCGATCCTAAAATCGCTGTTATGGTAA 788850 28 100.0 32 ............................ TATTAAAGATAGTCCATGTAGTAACTTTCTGC 788910 28 100.0 32 ............................ ACGCACAGCGCCTAAGTCACGTATCACTATTA 788970 28 100.0 32 ............................ AAAAAACTAACAGGAACAAATACAGCATTCGA 789030 28 100.0 32 ............................ CAAATGATATCTTTGGCTTTATACGTCTTAAC 789090 28 100.0 32 ............................ TAAGTAGCTATGCGCCATAAGCCTGAGCAGCC 789150 28 100.0 32 ............................ CGACCAGACCGATAGGGAGAAAGCGTCGAATA 789210 28 100.0 32 ............................ TATCGATTTTACCGATTCATCCGCACCTAACG 789270 28 100.0 32 ............................ AGCTTGACCAGCACCATCGCTTCATCCTGAAA 789330 28 100.0 32 ............................ AACTAGAAGGAACATCCGGCGGTTGTCCTGCC 789390 28 100.0 32 ............................ GCTTCGGACGCTGTAACCGTAGCTGTTACAAC 789450 28 100.0 32 ............................ ACGCACAGCGCCTAAGTCACGTATCACTATTA 789510 28 100.0 32 ............................ GAGAAGGACAGCAAGAACAGATAACCGCAATT 789570 28 100.0 32 ............................ AAAAAATCACAGTCGTTCACGATTCAAAAGTT 789630 28 100.0 32 ............................ TATCTATTCATATTCAAAGTTGAGTTCTCAGA 789690 28 100.0 32 ............................ TATAACCTAACATGGCTAGAAAAGAACATATT 789750 28 100.0 32 ............................ ATAAGTGGCAACTGCTTAAATAACCCTAGCTC 789810 28 100.0 32 ............................ ATCAACAATACGACAATCAGTAATAAAGGCAC 789870 28 100.0 32 ............................ TGTTCGTGGCGCTAGTTCTGTAGCGCCTGTTT 789930 28 100.0 32 ............................ GCAGCAATGATTCAAAAAGTATCGGCAACAAC 789990 28 100.0 32 ............................ ATCAGACCTGATATTACCGGCCCACTCTGCCA 790050 28 100.0 32 ............................ TAGAGGCCCTAGGCTTAAAGATGTGTACATTG 790110 28 100.0 32 ............................ AAGAAGGAAAAAGATGCGCTAAAGGATGAAGT 790170 28 100.0 32 ............................ AGTCGGGTTAATTTCTGACTGTAGAAGCCTAG 790230 28 100.0 32 ............................ TGATTCAATGTCGCTTTTCACGCATTGACGCC 790290 28 100.0 32 ............................ GGCACAGGACAGAGCACAGCCACCGGCACAGA 790350 28 100.0 32 ............................ GTTGTCGTTGTCTGCAAACACCGTGCCGTCAT 790410 28 100.0 32 ............................ AGCAGAACCAAGCATCGTTATCGATGCGGCTA 790470 28 100.0 32 ............................ TTTGAAGTTCAGGGAGATGGAGTTTGTCGAAA 790530 28 100.0 32 ............................ AAGAGTCAAGCTACAGACGCAATATTTATTGC 790590 28 100.0 32 ............................ ATAGCTGCGACACGGCGTAAAATAACCGAATA 790650 28 100.0 32 ............................ TGCGAGTGAAAACATTAAAGCCGCAATTGCTA 790710 28 100.0 32 ............................ ATTAGTTGGAACGCAAGGAGGTGGTAGCGGTA 790770 28 100.0 32 ............................ TTGGTTCGATAAAAAGATGGCTGCTTACTCAT 790830 28 100.0 32 ............................ GTATGGTGATTTTGCTGTACGGGCAGCTAAAA 790890 28 100.0 33 ............................ ATTAAAAAATATTTTTCAAGGCCATAGCGTTAA 790951 28 100.0 32 ............................ TGATAACTGACAGCAAAGTGCGGGTAAGCGTT 791011 28 100.0 32 ............................ TTTGTTCATACTTGTTACCGCTTTAAGGCTTG 791071 28 100.0 32 ............................ ACGAAATACTGCGCTATTAGCGCAAACGTCTT 791131 28 100.0 32 ............................ TCGTCAGCTACAAATTCAACAGCAATAGTTCT 791191 28 100.0 32 ............................ CCATAGAACTGGATTGTGCGCCCTTCTATAGA 791251 28 100.0 32 ............................ ACAGATAGCCTTGACGATTTAACCAAAAAACT 791311 28 100.0 32 ............................ AAAAGATAGGTATAAATCTCGCCAGCACGAGC 791371 28 100.0 32 ............................ ACTATGTTCGACGCGATGGCCGATGTTGTGGG 791431 28 100.0 32 ............................ GTTAGAGATTGCAATTGCGTGTGGTGATGTTG 791491 28 100.0 32 ............................ ACCAAGAGAGGAACACTATGGGCGACACAATT 791551 28 100.0 32 ............................ ATCCGTTAACATCATTAATCAGCGTAGTTACA 791611 28 100.0 32 ............................ AAAATCACCCAAGGGCATAACGTGTTCGGTTC 791671 28 100.0 32 ............................ AGAAATAAACCAGCAGTAAACAATCAAGTAAA 791731 28 100.0 32 ............................ ATCGAGAAACTTCGCTAGCGATGTTTTTTCCG 791791 28 100.0 32 ............................ AGTTAAGCAAGATAAAAAAGAAGAAGAAACCA 791851 28 100.0 32 ............................ GCCTGATTTACCGCCATCCGCTGTTACTTGGC 791911 28 100.0 32 ............................ TGACCCCTAATAAAGTGATGACGTTTTCGCAA 791971 28 100.0 32 ............................ TAGCAAATATCAGGGTGCGGATTGCTCAATTA 792031 28 100.0 32 ............................ ATCCCGAACAAGTACGTATAGCAATTCATTTG 792091 28 100.0 32 ............................ GCTGAAAAGTGTTTCTGATACGCTCTTTTATT 792151 28 100.0 32 ............................ GCGCTGTAATTGTGGTTACCGACCAACAGTTT 792211 28 100.0 32 ............................ TGTCATACTGCACAGCAACAGGGGACGGTCAC 792271 28 100.0 32 ............................ AATATGTAATCAGGTTTTTCAGATGCGCCAAA 792331 28 100.0 32 ............................ AAGAAACTATTGTTATCAAAGGAAAATCGTCT 792391 28 100.0 32 ............................ GATTCAGAAAATGCCATGTTTATTGAGTTTAT 792451 28 100.0 32 ............................ AGACAAAGTGCGTCCATTCAGCTTTATTTCAT 792511 28 100.0 32 ............................ ATCCAACCAAGGAAGTTAGTTGTGGTATAAAC 792571 28 100.0 32 ............................ GAAAAAAGTCAGGAACCGGCAGCAGGATCGAA 792631 28 100.0 32 ............................ ATGAAAAAGAGGTCAGTTTTACCGCCGGTGAT 792691 28 100.0 32 ............................ TGATTTTGTGCAAACGTTATTAACCCAATCTA 792751 28 100.0 32 ............................ TGAGAAGGTATTACCTTTTAAGTTCGTGCCTT 792811 28 96.4 33 ................A........... GTCAAAAATTATTTTGTTATATTCTGATAGCGT 792872 28 89.3 32 ...........A.T...T.......... TTTCGCCCTACTTCCGTCAATGAAGTGTTACT 792932 28 75.0 32 ...T..T..........TA..C...GT. TTCTTTATATTTAAGTTTCAAAATATTTGATT 792992 28 67.9 0 ......T.T..T.A....T.TAC.T... | ========== ====== ====== ====== ============================ ================================= ================== 97 28 99.3 32 GTTCACCGCCGCACAGGCGGCTTAGAAA # Left flank : GGAAGATCTAAAGGTAAGCAATTGGCTGCGTCATTTTACCGACTACTTGCATATCAGTAGTATCCGTCCCGTGCCCGAAAAAATAGAAGTTTATGTAGCTTATTCGCGCCCAGCAATCCGTGCGAATAAAGCGCGGGAAATCGCTCGAAGAATGAAGCGTCATAATGAAACGTTAGTGCAAGCTACAGCGCATTTTGACGGTTTTAAACCTAAAAAGACCAAAGCGCCCTTTGTTTATATGCAAAGTTACACTAAGGATTCGCGCTTTCCTTTATTTATTCAACAAACACATAGTGCAGTAGTAAAGGAGGGAAGTGTTTCGTTTGACAGTTATGGATTATCAAGCAGAGGCTATTTACCCAGGTTTTGACCTTATAATTTATGCTCTTTAACAAATTAAATAGAAACAGTGAGTTACAGCAGTGTTTTTTTCGTAAGGTAAAATAATGGTTTTTAGCCTAACGAACTGTAGTTACTCACTTTTAAACTAGTAATCTATT # Right flank : AATCTATGACAAGCCGATTTTTGAGCGCGATTTTAATTGAATGATTCTGCTATACTCCGCGCCAAGATATCAAATGACAAATCATTATTTTAGTTTTGTGTACAAACATGTGTACAAACTGACTGAACAACGAGTAAGACCTAATAAATATGTCTATAGAAATCAATAAGCGACGCACTTTTGCTATTATATCGCACCCCGACGCGGGTAAAACAACCATTACCGAAAAAGTGCTGTTATTCGGAAACGCTTTGCAGAAAGCGGGTACGGTTAAAGGCAAAAAATCGGGTCAGCATGCTAAGTCTGACTGGATGGAAATGGAGAAAGACCGTGGTATTTCTATTACTACGTCTGTCATGCAATTCCCCTATGGTGGCGCCCTTGTTAACCTACTCGATACGCCTGGTCACGAAGACTTCTCTGAAGATACTTATCGTACTCTGACGGCCGTTGACTCATGTTTGATGGTGATCGACTCAGCTAAGGGTGTTGAAGACCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCGCCGCACAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACCGCCGCACAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //