Array 1 289031-289386 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV818688.1 Rothia sp. HMSC066H02 Scaffold204, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 289031 36 86.1 28 NNNNN............................... TACGTCCAAAAGTACCCGAAAAATTACA 289095 36 100.0 28 .................................... TAGATCGCCACCGCCAGTGCGAACGCCG 289159 36 100.0 28 .................................... CTCGAATCCCTCACCATCGGCGCACACG 289223 36 100.0 28 .................................... TACACGTTTATAGTCTCATGCGCACCGG 289287 36 100.0 28 .................................... AACCTCCCAGATACATGCCGGCAGCTTG 289351 36 86.1 0 ...............................NNNNN | ========== ====== ====== ====== ==================================== ============================ ================== 6 36 95.4 28 GTTGAGAATCTTTCATTATTCGCCTTGATATACTTA # Left flank : CTTAAATATTTCACTGCACACCCTTGGAATATTTGCGGGGTGGACTATTTCTTGTAGCCCACCCCGTTTCATTATCCAAAATATATCAAAATACAAATATTTATTTTTCGGTATATTATTTTCCTTAAATCACCTTGATTCGACCCCAATGCACACCCTACTCTCGCCCACCCCTGCCTGAGAGCGTTTTACAACCAACCTTGATATACTTACCACACCTGACTTACTGGGTGCATGAGGTGTGAGTTGAGAATCTTTCATAATTCGCCTTGATATACTTAATGAGCGATCCCGGGGCGTGAGGGAGTGGTTGAGAATCTTTCATTATTCACCTTGATATACTTACTCCTGTGCATATGAAGAGCTGTACACCGTTGAGAATCTTTCATTATTCGCCTTGATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAATCTTTCATTATTCGCCTTGATATACTTAGCAACCGAATCATACAGCATCGCTGAACGTTGAGAATCTTTCATTATTCGCCTTGATATACTTAGCATCGAGTGCCGCCCCGAGATGAGCAAGTTGAGAATCTTTCATTATTCGCCTTGATATACTTAAATCATCTTGCGGATGCGGGAGGCGTAAGTTGAGAATCTTTCATTATTCGCCTTGATATACTTACTGCCCATGCGCTCCAGTCCTTTTGTTGGTTGAGAATCTTTCATTATTCGCCTTGATATACTTATGAAAAACTGCAACGACGAATCCTCGAAGTTGAGAATCTTTCATTATTCGCCTTGATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 3.03 # Score Detail : 1:0, 2:0, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAGAATCTTTCATTATTCGCCTTGATATACTTA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [5-5] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 289541-289768 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV818688.1 Rothia sp. HMSC066H02 Scaffold204, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 289541 36 100.0 28 .................................... GCATCGAGTGCCGCCCCGAGATGAGCAA 289605 36 100.0 28 .................................... AATCATCTTGCGGATGCGGGAGGCGTAA 289669 36 100.0 28 .................................... CTGCCCATGCGCTCCAGTCCTTTTGTTG 289733 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================ ================== 4 36 100.0 28 GTTGAGAATCTTTCATTATTCGCCTTGATATACTTA # Left flank : TTTCATTATTCGCCTTGATATACTTATACGTCCAAAAGTACCCGAAAAATTACAGTTGAGAATCTTTCATTATTCGCCTTGATATACTTATAGATCGCCACCGCCAGTGCGAACGCCGGTTGAGAATCTTTCATTATTCGCCTTGATATACTTACTCGAATCCCTCACCATCGGCGCACACGGTTGAGAATCTTTCATTATTCGCCTTGATATACTTATACACGTTTATAGTCTCATGCGCACCGGGTTGAGAATCTTTCATTATTCGCCTTGATATACTTAAACCTCCCAGATACATGCCGGCAGCTTGGTTGAGAATCTTTCATTATTCGCCTTGATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAATCTTTCATTATTCGCCTTGATATACTTAGCAACCGAATCATACAGCATCGCTGAAC # Right flank : ATGAAAAACTGCAACGACGAATCCTCGAAGTTGAGAATCTTTCATTATTCGCCTTGATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATCTTTCATTATTCGCCTTGATATACTTATTGATGCCCGCATCGCGTGATTCGCTGCGTTGAGAATCTTTCATTATTCGCCTTGATATACTTAACCGACCGAGAAACCAGCTACACTACCAGTTGAGAATCTTTCATTATTCGCCTTGATATACTTAACGCCCTATGACTCTCGCATCGTAGAGGGTTGAGAATCTTTCATTATTCGCCTTGATATACTTACCATCCCCTGGATCCTGCGCCTGAGCCGGTTGAGAATCTTTCATTATTCGCCTTGATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAGAATCTTTCATTATTCGCCTTGATATACTTA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 3 291323-291742 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV818688.1 Rothia sp. HMSC066H02 Scaffold204, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 291323 36 83.3 28 NNNNNN.............................. AATCTTTCACAGGTAACGCCTATCTGTC 291387 36 100.0 28 .................................... ATAGGATCCATTTCACCACGAAGAGCGG 291451 36 100.0 28 .................................... TATGCGCCCGGCGCACCGTGCGGGGCGC 291515 36 100.0 28 .................................... TTCGATTCTTGCTTGCCAGCCAGGAACG 291579 36 100.0 28 .................................... TACAGGCGTTTTGTCTCCGAATTGGGTG 291643 36 100.0 28 .................................... CATGGCGAAAACACGCATGGTCTGAACA 291707 36 83.3 0 ..............................NNNNNN | ========== ====== ====== ====== ==================================== ============================ ================== 7 36 95.2 28 GTTGAGAATCTTTCATTATTCGCCTTGATATACTTA # Left flank : ATCTTTCATTATTCGCCTTGATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAATCTTTCATTATTCGCCTTGATATACTTATTATCATCGAGCAAGCCGTCACGGTTGAGTTGAGAATCTTTCATTATTCGCCTTGATATACTTAAAACCGCACCGCTGGTAGAGGCGCACATGTTGAGAATCTTTCATTATTCGCCTTGATATACTTAAAATCTCAGAAGTACCCCGCCTTTCCGCGTTGAGAATCTTTCATTATTCGCCTTGATATACTTACACCACCTTCAAAGTCGGCAGGAGCACAGTTGAGAATCTTTCATTATTCGCCTTGATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAATCTTTCATTATTCGCCTTGATATACTTATTAGGCGGCAACTATAAGCATGACCGCGGTTGAGAATCTTTCATTATTCGCCTTGATATACTTACCTCAAGGTTATTATCTTTAGCGGTGCGGTTGAGAATCTTTCATTATTCGCCTTGATATACTTAAGTAATCAAGCGTTTCCCCTAGTCAGGGGCATAAATGGGGTAGTTTTTCGAAAGAAAAACTGCCCCACACTTGCATCAGATACCCTCTCTAAACGAGGCCCGAAAGGAAAAACGAGCCGGTGAGGTAGTGACCAGATAAAGCCACTACCCCACCGGCTCATTCATTACAAAAACCCTCTAGAAAATATCTAAAGCATCCGGCTTCTCCTCCATCTGCTGCACCTCCGGCCCCAAATGGCGAATCGA # Questionable array : NO Score: 3.02 # Score Detail : 1:0, 2:0, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAGAATCTTTCATTATTCGCCTTGATATACTTA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [6-6] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //