Array 1 49-931 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJMH01000026.1 Escherichia coli strain MOD1-EC315 MOD1-EC315_26_length_63317_cov_51.6127, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 49 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 110 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 171 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 232 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 293 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 354 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 415 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 476 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 537 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 598 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 659 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 720 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 781 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 842 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 903 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 15 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CAGCGGGGATAAACCGACGACGACGGCAGCGCAGCAAACTGGCACGGGG # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [26.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 42893-44385 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJMH01000025.1 Escherichia coli strain MOD1-EC315 MOD1-EC315_25_length_70710_cov_50.3024, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 42893 29 100.0 32 ............................. ATCGATATGTACGTTAGCGAGGGGATCACGCA 42954 29 100.0 32 ............................. GGGACCGCCGTAGATGAAATTAAATCATTCAG 43015 29 100.0 32 ............................. CCCTTCTCTGACAGGTTTGCGGGCCTGTACCC 43076 29 100.0 32 ............................. ATCACCTTCGGCGCTTACGTCGCCGTCCGTGT 43137 29 100.0 32 ............................. GGGTATATCTTGTACGCGACTGATCCTGATTT 43198 29 100.0 32 ............................. GAGCGTAGAGATTCTCGAAACCGATCCGGACG 43259 29 100.0 32 ............................. GACGTTGCGCGCACTAAGAAAAACAGGTTCGA 43320 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 43381 29 100.0 32 ............................. TCATCGAAAACCAGCGGATCGAATGGGACGCC 43442 29 100.0 32 ............................. AGACGGCGCGTAAAACTCATACGGCGACAAAT 43503 29 100.0 32 ............................. CTCGCGGGCGTGGAATTTAACGAACGGTTACC 43564 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 43625 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 43686 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 43747 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 43808 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 43869 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 43930 29 100.0 32 ............................. TTAAAACATTTTCCGAGCTTTGCGATTTATAT 43991 29 100.0 32 ............................. TAAAAATCATCATGGAAAATCAACCCGGCGAC 44052 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 44113 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 44174 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 44235 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 44296 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 44357 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 70085-70662 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJMH01000025.1 Escherichia coli strain MOD1-EC315 MOD1-EC315_25_length_70710_cov_50.3024, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 70085 29 100.0 32 ............................. CCATAAATATTATTCCAATCTGGTCGGCTATC 70146 29 100.0 32 ............................. AACGGCTACGGCACGGAGGTTACCAATCAGAT 70207 29 100.0 32 ............................. CCTCTGCCGCACTGGCTCCTGACAGCCTCAGC 70268 29 100.0 32 ............................. AATTTTGGCAGCGTGTAAAATCCACTTTTCAG 70329 29 100.0 32 ............................. ACGACGACGGCAGCGCAGCAAACTGGCACGGG 70390 29 100.0 32 ............................. TAACGGCGAGGGAGTGAGCGAGGTATTTATTA 70451 29 100.0 32 ............................. TTACAGCGCGTTGCGAAACGCTGCGGCGATGT 70512 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA 70573 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 70634 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 10 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGCTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GAATACCGATTCATAACGGCGGAAATGTGGATGTGTTCCCCGCGCCAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //