Array 1 1075096-1076527 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP060244.1 Entomobacter blattae strain G55GP chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1075096 29 100.0 32 ............................. TCAACGAATAACTCTTCTCACAGTTTTATCAA 1075157 29 100.0 32 ............................. AGGTTTCACGAGCCTTAAGAAAGGTTAGTAAG 1075218 29 100.0 32 ............................. CCGCGAGGTGGCGGTTTTCTGTCATTTAACGT 1075279 29 100.0 32 ............................. GAAACATTTCATTTCGGATTTCTCTACGTCAC 1075340 29 100.0 32 ............................. GTCTATCTCCCCTTCCCTGACCTGTATGGGAT 1075401 29 100.0 32 ............................. CCAATGCGCGCAGGGCCATTGAGAGTGGAGAG 1075462 29 100.0 32 ............................. TCTATGACCCACCTCTATAACGATACAGACAG 1075523 29 100.0 32 ............................. CGTAAACGTCCACATCTGTTTGCTGTGTATTG 1075584 29 100.0 32 ............................. GGCGGGGCTGAGCAGGCTCTCCCGTAATGAGG 1075645 29 100.0 32 ............................. CGGCTTTCCACCTGTGTTTATGTTCAATGCCT 1075706 29 100.0 32 ............................. ACATTTTTCTGAAAATAAAATTTCAAAAAATT 1075767 29 100.0 32 ............................. GCAGGGGTTGATGTTATAGCGAGCAATATAGC 1075828 29 100.0 32 ............................. CTGTTTTCCTCTTATTGCTTTAGATTCAATAA 1075889 29 100.0 32 ............................. TTACAATAAGAGTTTGTGCACCGGAAAATGGA 1075950 29 100.0 32 ............................. CATAACAGGCATCTGACCACGAGACCCAATGC 1076011 29 100.0 32 ............................. GTCGCAAGAGGGTTAAAAAATAAAAGTGCAGA 1076072 29 100.0 32 ............................. TGTAGTGAGGGTTTGGCTGAATGTTACAAGCC 1076133 29 100.0 32 ............................. GAGCGCAAACGGTTGTTGTCCAGCAAATAGTG 1076194 29 96.6 32 ............................A GCTTTTCCATTTTGGGTTACGTCAATCTGTTC 1076255 29 100.0 32 ............................. CCGTGCTATCTGGCGGTTTGATTCAGCCATTT 1076316 29 100.0 32 ............................. CACGAGGGCATAAACCCCTATATTTACGTTAA 1076377 29 100.0 32 ............................. CGGGAGAGTAGGGATGGAGTTTTTAGGTTTTG 1076438 29 100.0 32 ............................. ATGGACTATAAAAACGTTGAGGGCTATAAAGA 1076499 29 79.3 0 .......................AGTGTA | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.0 32 GTGTTCCCCGCACACGCGGGGATGAACCG # Left flank : CCCTATTGCTTCGGGTTGAGCCAAAATGAGCCTTTAGGGCCATGGCATAAGTTTTTTGCGGAATGTTCGTTTCAGCTTTTAGAGTATAGGATTTTATCCACTCAAAAGGCATTACCAAGAGGGGTAGCCCTTTTAGGCGGGCTCTTTATCTTCTGGAAGTTGAATGCCATTAATCCGGTATTGAACTTCATTATGATCACCGCGGACATGGATTTGGTCAAAACTCTCTTGAGCAACTTTACACTTTTTATTGTGTCTGCTTATTGTGTTTGTTCTGGTTTCTTCGTTGGTTTTTTCTTGGGTTGGGTTCTTTTTTCCCTTAAGATCATCTTTTCCTCTGGTTTTTTAGTCTGCCCAAGAGTGGGCTTGTTCTCTCTCTGTCTGTTTCTTCTGGAGATCTTTTTCTCGACAGGGGATTAGAGGCTCTGATAGAGTGTGTTTTTATTGGTAGATTCTTTGACAGAAAAATAACGACGCCAAATCAATAACTTACACGAAGA # Right flank : ATCAAGAAGGAGTGTGTTGTCTTTCAAGAGGAGAGGGTATGGTGGTTTCTGTAATGTAGATTATTGGCCTGCAAAAGGTATGGGGGGGTGTGGGTAGGCAGGAGTTGGTTGAGTATTCTCAATGATCGAAAATTTTTTCGAGAAAATTTTGTTAAAAATGGTTTTAGGAGTTTCCATTTAGGCTTGGTTTTAAGCGTGGTTTTGCAAACCTTGTTCTACCATGAATGCCTGTAAGGAGTTCGACCTCGCTGTTGGCATGGATATTGGGGTAAGGCTTATAAGATCTAGACGATGAGCACTGGATGGATCGTAAAAAGTGAGAGATGGCCCATATCTTCAAAGAAGACAGTACTCATGTTCCGATACAGCCTTGCCTAGTGATCATGGGCAGGTTGTAGAGAGAAAAAGCAAAGAGAGCGGGCTACACGACCCTTCAGCTGAGAATTGGCACTGCAAAGGTAAAGCTGCAAAAGTAAAAATGTTAGCAAATTCAATCTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCACACGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1113503-1114812 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP060244.1 Entomobacter blattae strain G55GP chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1113503 29 100.0 32 ............................. AAAATTTATTAGATTTGTATAACAAGGAAGCA 1113564 29 100.0 32 ............................. CTTTTGTAAGCGGCCTAATCCTATCCAAAAGG 1113625 29 100.0 32 ............................. GGTGACAAATAAATCCAAAGAGGTCGCCAGAT 1113686 29 100.0 32 ............................. CTGACAGTGGAAGAAGAGTTAACAGGTGCAGG 1113747 29 100.0 32 ............................. GGGATACTGTAGACATAAACCCTGAGCTCAAC 1113808 29 100.0 32 ............................. GTATCAAAATCTGTTCGGCTAGCCATTACTGC 1113869 29 100.0 32 ............................. GGTTAGCATCACCGCCTCCTCTCACGTATGGC 1113930 29 100.0 32 ............................. TTTTTTCTGCCCCTCCGGGATTTCCACCGTGA 1113991 29 100.0 32 ............................. AAGAAATCTTAAGTACAATAGCTATAGCTAAA 1114052 29 100.0 32 ............................. GTTTCTGCCTCACGTAACAATGCCCTGTCCTG 1114113 29 100.0 32 ............................. CTGCGGTAGTAGGTAGGAGCGCCCAAAAATCC 1114174 29 100.0 32 ............................. TGTCCAGGCGTTGAGCAGGTTGTATAAATCCT 1114235 29 100.0 32 ............................. GGTAAAATAGTCAGGGTGACCTATGATGGGGA 1114296 29 100.0 32 ............................. ACCTAATCATTATTATCCGTCCTTGCCCCACT 1114357 29 100.0 32 ............................. GTTCGCAAGGATGCAGCCGCTGCGTGGGAGCC 1114418 29 100.0 32 ............................. AGGTAATGTTTGATCTGATGCTAGATTGTGGC 1114479 29 100.0 32 ............................. ACGACCCCTGGTGGAGCACACACTACCCGCCG 1114540 29 100.0 32 ............................. CAGCTTATCTGGCCCATTATGTTCACTCCCAA 1114601 29 100.0 32 ............................. CCCAAACGGGTGTAAAATCTGCTGTTACAAAC 1114662 29 100.0 32 ............................. GACGCCGAAGAACCACCCACCACCAAAACCGT 1114723 29 96.6 32 ............................A ACGAGACAGTAAATCCACCCGAAATATCGGCC 1114784 29 89.7 0 ..........................TTT | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.4 32 GTGTTCCCCGCACACGCGGGGATGAACCG # Left flank : CCTGTAGAATTCCAATTGCAGGCTGTTTTATCGCAGGTTGCTTTACTGGCAAAGATCATGGGAACCGACGTTATAGAAAGAGTGAGTTGCGCGGTGAATTATCCAGAAGAGCAGGAGGTAGAGAAGAGTGGTGGCGCGCAATAGGGCCTGTGAGAATAACCTATGAGAATCCTCATTGAATTGGTCGATATTGCCAAAAATATTGCCCCAAATATTACAGCAGATAGAGCAGAAGCATTGACCTGCAAGCAAAATCACTTACGAAACCATCCAGCATCATCATCCAAGGGGATATTTAAAAGCAACAGCCCATGACCTTGCCATACTCTATGACCCCAAATAGCTCAACCTTCCTGTAAAATGAGCCCTTGGCCCTCCTCTCTGTTTCTTCTGGATATCTTTTTCTCGACAGGGGATTAGAGGCTCTGATAGAGTGTATTTTTATTGGTAGATTCTTTGACAGTAAAATAATGATGCCAAATCAATAACTTACACGAAGA # Right flank : TTTTATGCTATTGTTTGGTGAGTTTCAGAGAGGAGAATAAGGGGAAATTTTCTGAGTGGTATAACGCTTCCATCCAACCCTGGGGACGGACTCTGGGGAGGCAAAAAAGCACTTCTCTTATTGTTGGGTTGGTATCAGATTCAAAGTTGGGTTGGCTTCTGGTTTAAAAAAGGAGCCAATCGGACAGGTTGCCCCCTTATAGGAGATGATGCGGGCTATAGAAGAGATATTTTTTATATGAAGTCTATAAAGGGAAGGGCTTTAAGGAAAACAGCACTGGTTTCTTGGGTTTTGTTAATTGACCGTGTTGTTCATTGAGGAGGTTCTTTAGGGGGTTTATGTCTACAATTTTGGTAGAAGCCAAAGCTTAACACCATGGTGGCCATAGCGGTATAGAGCACGGCAGGGGCGTAAGCTTAGCCTTCCTCTATGGGGATAGGTGAGTGTTCCGGAAGATCAGCCAAAAAAACCACCCTGACTTTGGGGTGGTTTTTTATGGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCACACGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 1127564-1127956 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP060244.1 Entomobacter blattae strain G55GP chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================ ================== 1127564 29 100.0 32 ............................. TGGAAATTACATCGTTTTTTACGTTATTAGAG 1127625 29 100.0 32 ............................. CCCTGCATCGCCCACCCCCATATTCTCCTGTA 1127686 29 96.6 32 .......T..................... ACCGTGACGGTAAGGTATTCCTGCGCCGGAAC 1127747 28 82.8 92 ......................-A.CT.A TTGAGGTGATTGGTATATTTCTGCTGGGGGTATATTCTTTTAGAGAGGGTATGAGTAGCCGGGTTGAAAATTTATTGTTCTATCGGTAAGAT 1127867 29 79.3 31 AA.AG......T................T GAATGGTGTATAGCAAGGTATATGACCAAAG T [1127871] 1127928 29 75.9 0 .CT........CT..........A..TG. | ========== ====== ====== ====== ============================= ============================================================================================ ================== 6 29 89.1 44 GTGTTCCCCGCACACGCGGGGATGAACCG # Left flank : ATCCTTAGAAGAAGGCACCTTGATAGATGGCCCTTTTCAGGCTTTTTTTGCTCTTGGCTCAATGCGGTCCCGGTTCCTGAGTGAGGCATTTTGTGAGGATTTTGGCCCCTTATATTCTCTGTAATTTGTATTTTCCATAAAATGGGTCTCTTTTATATCATGCCTATTCCCTTCAGTGGGTAAAACTAGCGGCCAGAACCTTTCGGTCAATGAGTAGCCAAATAGCCGAACTCATAAAGAGATCTCTTCAATAATCTCTCGCGTCTCTCTGACATGATGATCGATAAACATCTCGATGCCATGGTTCTTAAGGTGAGAGATCAGGTCACGGATTTCCCCTAGAGCGAGAGTCTCTTGGCAAGAGAGGATTGATTTTTTTTAGGGGTGTTATCAGGCAGAAGGGGATGGGATGGTTTTTTGGTTTTTTCTCAAGGTGCAAATGGCCGATCATCAAGGATATTGGTGACCGCGAAAGGGTGGGTCATATAGGGGTTGCCCTT # Right flank : GCTTGGAATATAGCCAAGCAAAAAGGTATAGTTTGGTATTCTTCACCCTTGGAGGATTACAGCCTCTGGTAAAGTGGGTATACCGGCCGTGAAAGCATCCCCCATAGGAGGGGGGATGAGCTAGGCTTCAGCCGTTTCTTACACCCTTTGTCCATGGATTTCCCGCTTTGTATTGTTGGTTTTTGCAGGGGGGAGGGAGTAAGAGTTCCTCTTTGTTGGGGGTCTCTCGTGAGAAGGGGGTATGGGGTGGGCTGTTCTGAGATGGTGGAGCAAGAGCAAGAGAAAGCCAGCCCAACATTCTTGATTCTTGGGGTTATTTTTCTTCTAAAGGGGTAGGGTGCTCTGCAAGGGTGGTTGAAGCTTGTTGGGGAGGCAGGGGGTGAAGGTGATGAAGTGGAATTTCAGGGGGAATAAGGTAAGGGGCGTAACCTCGATGGCCAAAGTTGGTAATACGGGCTTCGCGAATTTTCAGAATACCAAAAGAGCTTGCTTTAAGCAGT # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCACACGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 1594343-1596102 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP060244.1 Entomobacter blattae strain G55GP chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 1594343 36 100.0 31 .................................... TCTCTAGGTCAGGGCTGTTCCAAACCCATAC 1594410 36 100.0 30 .................................... CTCTTGCAATAAATCATCGACAGCATTCCA 1594476 36 100.0 30 .................................... GTATTCTTTAATTTGCTTAAATGTCATAAA 1594542 36 100.0 30 .................................... TTCTGGCTCCCCATAGGTAAGGTAATATTA 1594608 36 100.0 30 .................................... AACTTCGGGAATATGCACCAGCTCTTAAAA 1594674 36 100.0 30 .................................... TGCTCGTAGGTGTTCCATTCTTTTGTGTTT 1594740 36 100.0 30 .................................... TTAAATGGCCGTTTTTCTGAAATACAGACC 1594806 36 100.0 30 .................................... CCTATAATCTGCTCGTATTTGTCCAGAACA 1594872 36 100.0 31 .................................... ATTCATTGAGTGAACCTTTCTAGGTACTATT 1594939 36 100.0 30 .................................... CTATTTCTGTGCAATAGCCTCTTTCGGCTC 1595005 36 100.0 30 .................................... CCGATAAACTGGTTGCAATTAACCGTGTCG 1595071 36 100.0 30 .................................... ATCTACGTTTTACGGTGCTCGCTATTCTCA 1595137 36 100.0 31 .................................... TTGAGAGATGGCCTCGGTTTCGATCTTGTAA 1595204 36 100.0 30 .................................... GTTTTACCTAAAGCTTCATTCCACTCATTA 1595270 36 100.0 32 .................................... TCTTCCCAAAAATCACGGGGGATAGGGGTTAA 1595338 36 100.0 30 .................................... CCATTTTCCTGTAACTGTTCTTTTACATTT 1595404 36 100.0 30 .................................... TCTAGACCTAATCTGTAGCTCAAATCCAGC 1595470 36 100.0 31 .................................... TTAAATATTTTAAAAGTGGCATTAAGTCGAA 1595537 36 100.0 31 .................................... TTGACAAGTGCAAGTATTGCAACAACTATAA 1595604 36 100.0 30 .................................... TGAAATGTTTGTAGGGGTAGGGGCCTCCCG 1595670 36 100.0 30 .................................... CCAACAATTAATCCATTAGAAGTATATTGG 1595736 36 100.0 30 .................................... TATATTAGAAATATTGTTGAGATGACTTCA 1595802 36 100.0 30 .................................... CATCCATCGATACAAAAGAAAGATCGATAT 1595868 36 100.0 30 .................................... ATCTTCTCTTCTCGCAATAAACGGGATACT 1595934 36 100.0 30 .................................... TCTTCTACTTTTATGCATTCCCGTGTAGCT 1596000 36 100.0 30 .................................... AAGCTATTTCTACACGAGAAGTTTGGTTAA 1596066 36 88.9 0 ..............................G.TTA. | G [1596098] ========== ====== ====== ====== ==================================== ================================ ================== 27 36 99.6 30 ACCTTAGCATATAGAGAACTGTAAGGAAACCACGGC # Left flank : GGGACTCTTACCTGCCATAGAGAAAATGGTTTTCTCTTTGGTGCAAGCTATTTCTGATAATGATCCCAAAAAATTGGAATTGCCTGTTTTTATGCCTTACGAAATTGTTCCTGATGAAATATGAAGAGGCAAGGTTTATGTGGCTTTTTTGTTTTTTTGACTTACCCGTAAAAACAAAATTACAAAGAAAAATGGCCACAAGTTTTCGAAACCATTTAATAAATGACGGTTTCATCATGATCCAGTTTTCAGTTTATGCTCGTGTATGTAAAGGTGAGGATGGAAACCAAAAACATGTTGATCGCATTCGAAAATTTTTACCAAGCGAAGGATCAATCCGATGTCTATCAATCACCGATCGTCAATATGGTCGTATGAAGATTTTGCTTGGATTAGCCAAAAAAAACGAGAAAAAAAGAGGAAACCAACTGATATTATTATAATTTTTTTAAAAGAAAAATCAAAAAAAACAAGAAATATCAGTTGGTTACATTAGGCCT # Right flank : CCTGCTTATCGGTTATCTATTTTTACAGAGGCTTGACGGTGGTATATACCAGAGAAGGTGACATTCATACCACCACATGCAAGATTGCTTTCAGCAAGAAGATATGGACCCTTTTTAATCATTTTAATTTTACAATTATTAGTATTTTCTTCTGTATAAGGAAGCGTTTTTCCGTTCATGCTATTCATAACAAAAGCTAGTATGTTATTGTTAAGTTTAATTGTTCCGCTAATCTCTCCGGTGTTAATAACATCATTCATTCCTTGCCATTCAGCCTCACCTGTAATTGTGTAAGTATTTTCTGAGGATTTAATAGTAATTATACTGCTATTGCTTCCACGATTTGTTTTCCATATTCCATTCCAATCATTGTTTGTAGCTTCCTCAGCAGGTATTAACTTTAAAGAATCCTTGGAAAGCCAACCTTGAAACAGGTTTCCTTTTGCAGATACATAAGAAGCACAAACAAATTTACTATTCTTTTGCTCTGTAAGAAGAAC # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCTTAGCATATAGAGAACTGTAAGGAAACCACGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 5 2359916-2360308 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP060244.1 Entomobacter blattae strain G55GP chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 2359916 27 85.7 34 TAA...-..................... GCACCAGACGCTATCGTTTATACGCAGTTTTACG 2359977 27 85.7 34 .TTC..-..................... AATTATGTACTATACTATACAAATAATGCGCCCG 2360038 27 82.1 33 .TTC..-.G................... ACGGCTTGGTCCCAATTGGCGGTGGGGGGCACC 2360098 28 100.0 33 ............................ CTGAATGCTATGTTCAGGGGGCAGGAGTTTGCC 2360159 28 100.0 33 ............................ GGTCTGCCCCATTGAAGATCCGATAATCCACCT 2360220 28 100.0 33 ............................ TTCAGTTCTGTATTTAGGTCTAGAATAGTGTTC 2360281 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 7 28 93.4 34 GGGAATACCCCGCGCGTGCGGGGAATAC # Left flank : GCCAAGAAAAATACCATATGCTGGAAAATGCCTTAAAGAAAATTCCGCATAATGGGCTCATTAGGGCCTTAAGCTCAACTTTCTTTCTAGATACCCACCTGAGTGCCCAGGAAGTTGAGGATTTTCTTAAAAAATCGACCCAGTATGGCGGAAATATTATTATTATTCCACTCACAAGCTCGCATAATAATGTTAAAATTGAAGGAAACCATAGAGAAAAGGTTTTTGACTGGCTTTATAGCGGAAAAAGAAACTGGTAAAAAACCTTCTTCTATTATTAAAAACGGACTTCTCGATAAAGAACACCTTTTCCTTCTGAACGCCCTACGACAGAGAAAACGGAACAACAGTTCTAGAACACGAGATCAAAAAATTCGTCCCTTTTCTGAGAAAAACGTAGTGGTAGCGACAACATACCCAGCGTTCTTAGCAGAGGAAGGATCAGTTCCCTCTTTAACTTTCCTATTGAAAAATAATAACAAAAATCTCTACCCCTCTAC # Right flank : CTCTTAGTGTAAATTATTGATTAAGCATCATTATTTTACTGTCAAAGAATCTACCGAATAGGATTAGCTTTACCAGACTGTCTAGCAGGCTGTCGAGAGGACTGCTTCATCATCGGCCCAGGCTCCGCTGGAAGAGCTGCCTCCTTCCCAAAAGCCACAAGACGAAAATGATCAAAATCAACAGGAACCCTGCGATTTTGGCCGCATGTATCAAACTCAAAACCCGCATCATTAGCGGCAGTCCAGGCCATAACGGCATTTCCCTCTTCAATGTAGGAACAAACTTGCTGCCAGATCATCTCCCTGACCCGTTGTCCATACGCCCCAATGTAAACCCCCGCACGTACCTCTAAAAGCCATACGGCTAAGCGCCCCCTTAAACGCGGGGGGGCATTTTCAACCACGATGACCAACATCACCCAACCCTTTTGGATCCTCAAAGGCAATTGGCATCGCTTCATCGGGCACTTCTGGCATCTCACCTCCCCCAGCAGCCAGAA # Questionable array : NO Score: 2.93 # Score Detail : 1:0, 2:0, 3:0, 4:0.67, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGGAATACCCCGCGCGTGCGGGGAATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.41 Confidence: LOW] # Array family : NA //